BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51000.1 Length=1137 Score E Sequences producing significant alignments: (Bits) Value Ahg495165 jgi|Araly1|495165|fgenesh2_kg.8__981__AT5G51000.1 348 6e-95 Ahg357348 jgi|Araly1|357348|fgenesh1_pg.C_scaffold_8001135 178 8e-44 > Ahg495165 jgi|Araly1|495165|fgenesh2_kg.8__981__AT5G51000.1 Length=932 Score = 348 bits (188), Expect = 6e-95 Identities = 314/368 (85%), Gaps = 35/368 (10%) Strand=Plus/Plus Query 8 CGATGTCTGATCTTTTC--CC-GGATTTGGTAGAAGAGATACTCTCTAGGGTTCCAATAA 64 ||||||||||||||| | || |||||||||||||||||||||||||||| ||||||||| Sbjct 5 CGATGTCTGATCTTTCCGGCCGGGATTTGGTAGAAGAGATACTCTCTAGGCTTCCAATAA 64 Query 65 CATCTTTGAAAGCAGTGAAATTAACTTGTAAACAATGGAATG---ATTTATCCAAAGATT 121 ||||||||| || ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 65 CATCTTTGAGAGAAGTGAGATTAACTTGTAAACAATGGAATGATTATTTATCCAAAGATC 124 Query 122 CGAGCTTTACAAAAAACCATTATGGTAAAGAAGCCAAGGAGATTCAGGTGATCATGATAT 181 |||||||||||||||||||||||||||||||||||||||||||| | | | | | | Sbjct 125 CGAGCTTTACAAAAAACCATTATGGTAAAGAAGCCAAGGAGATT-ATG-G--C-T--T-- 175 Query 182 GTGATTTAAAGGCTTGTTTAATGAGCGTCAATCTCCATAATCACAAAGACTTGGCAGATC 241 || || || | | | | ||||||||||||||||||||||||||||||||||| Sbjct 176 GT--TT-AA----T-G---A--G--CGTCAATCTCCATAATCACAAAGACTTGGCAGATC 220 Query 242 CATCTATAAAGCAAATAGGTAAACTTAATCAAGTCGAAATA-GAT-AG-TG-TGTTTCAT 297 ||||| ||||| ||||||||||||||||||||||| ||||| | | | | |||||||| Sbjct 221 CATCTCTAAAGAAAATAGGTAAACTTAATCAAGTCAAAATAAG-TCAACTACTGTTTCAT 279 Query 298 TGTGATGGCTTATTATTATTGTTGTTATGCAACCCTAAGGATAACTCGAAGCTCATGGTT 357 |||||||| ||||| |||||| ||||||||||| |||||||||| || | |||||||||| Sbjct 280 TGTGATGGTTTATTGTTATTGATGTTATGCAACGCTAAGGATAAGTCTAGGCTCATGGTT 339 Query 358 TGGAACCC 365 |||||||| Sbjct 340 TGGAACCC 347 Score = 279 bits (151), Expect = 2e-74 Identities = 260/310 (84%), Gaps = 18/310 (6%) Strand=Plus/Plus Query 798 TGATGCGTATGAGATGGGAATATGGATTACAACTAAGATTGAGCTCAATATAGTGTTGTG 857 |||| | ||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 633 TGATACATATGAGATGAAAATATGGATTACAACTAAGATTGAGCCCAATATAGTGTTGTG 692 Query 858 GAGCAAGTTCTTAAAAGTTGATAT--GAC-ATTGCCT-AACAGCTATTGGTTTGAAGATT 913 |||||| ||||||||||||||||| ||| |||| || || || | ||||||| | | | Sbjct 693 GAGCAACTTCTTAAAAGTTGATATGAGACTATTGACTGAA-AGATTTTGGTTTCCATA-T 750 Query 914 TGAGTTTCTTCCTCGTCGACGAGAAGAAGAAAGTAGCAATGGTTAGTGA-ATTAGACAT- 971 || | || ||| ||||||||||||||||||||||||||||| || || | || ||||| Sbjct 751 TG-GATT-TTCTTCGTCGACGAGAAGAAGAAAGTAGCAATGATTTGTCATAT-AGACAGC 807 Query 972 AGAAACGTGTAAGAACTACAAAACTTACATTCTCGGAGAGAATGGATACTACAGAGAAGT 1031 | ||||||| || ||||||||| || |||| | |||||||||||||||||||||||||| Sbjct 808 A-AAACGTGGAACAACTACAAATCTCACATGGTTGGAGAGAATGGATACTACAGAGAAGT 866 Query 1032 GGA-TCTTAGAAAATCC-AAAGGTTGTGTCTACTTATGTGTTCTTATGTTCCAAGTTTGG 1089 | | | | |||||| || |||| || | |||| |||||| |||||||||||||||| || Sbjct 867 GAAATGT-AGAAAACCCGAAAG-TTAT--CTACATATGTGCTCTTATGTTCCAAGTTCGG 922 Query 1090 TGCAAATCCA 1099 |||||||||| Sbjct 923 TGCAAATCCA 932 Score = 156 bits (84), Expect = 4e-37 Identities = 167/204 (82%), Gaps = 18/204 (9%) Strand=Plus/Plus Query 457 TTTTATATGGGATACGACAGC-AACAACAACCACAAAATCTT-ATGGTTTTCGTCTATGT 514 ||||||||||||||||||| | |||||||||||||||||||| | ||| |||||| | Sbjct 373 TTTTATATGGGATACGACA-CAAACAACAACCACAAAATCTTGA-AGTTCTCGTCTTTCC 430 Query 515 ACCGTGAGTATGAAATCTACGATTTTAAGTCTGATGCGTGGACGGTTATTGATGTCAATA 574 |||||||||||||||||||||||||||||||| |||| |||| |||| ||||||| || Sbjct 431 ACCGTGAGTATGAAATCTACGATTTTAAGTCTAATGCATGGAGGGTT---GATGTCACTA 487 Query 575 CCGACCA-AGACCATATAATAGATA-A-TCAGCGTGTGTCCTTGAAGGGTAATGTTTACT 631 ||||| | | ||||| | | | | | | | ||||||||||||||| |||| ||||| Sbjct 488 CCGACTGTA-AT-ATATA-TCGTTGGAGT-A-C-TGTGTCCTTGAAGGGCAATGCTTACT 541 Query 632 TTATTGCTCATGACATA-TTGAAA 654 |||||||||||| | | |||||| Sbjct 542 GTATTGCTCATGAAA-AGTTGAAA 564 > Ahg357348 jgi|Araly1|357348|fgenesh1_pg.C_scaffold_8001135 Length=1056 Score = 178 bits (96), Expect = 8e-44 Identities = 215/269 (80%), Gaps = 22/269 (8%) Strand=Plus/Plus Query 139 CATTATGGTAAAGAAGCCAAGGAGATTCA-GGTGA-TCATGATATGTGATTTAAAGGCTT 196 |||| |||||||| ||| ||||||||| | ||| | ||||||| | | |||| |||||| Sbjct 79 CATTGTGGTAAAGCAGCTAAGGAGATT-ATGGT-AGTCATGATGTATCATTTTGAGGCTT 136 Query 197 GTTTAATGAGCGTCAATCTCCATAATCACAAAGACTTGGCAGATCCATCTATAAAGCAAA 256 |||||||||| ||||||||||||| || |||||||||| |||||||| ||||||| ||| Sbjct 137 ATTTAATGAGCATCAATCTCCATAACCATAAAGACTTGGTAGATCCATTTATAAAGAAAA 196 Query 257 TAGGTAAACTTAATCAAGTCGAAATA-GATAG-TGTGTTTCATTGTGATGGCTTATTATT 314 ||||||||||||| || ||| ||||| | | | || ||||| || | |||||||| || Sbjct 197 TAGGTAAACTTAAACACGTCAAAATATG-T-GAAGTATTTCACTGCAACGGCTTATTGTT 254 Query 315 ATTGTTGTTATGCAACCCTAAGGATAACTCGAAGCTCATGGTTTGGAACCCTTACTT-GG 373 | || | | | || | | | || | | |||||| |||| |||||||| || || || Sbjct 255 A-TG-CG---T-C-ACTC-ATGAAT-A-T--AAGCTCGTGGTATGGAACCCGTA-TTCGG 301 Query 374 GTCAAACCAGGTGGATCCAACCTAGAAAC 402 ||||||||||||||||||||||||||||| Sbjct 302 GTCAAACCAGGTGGATCCAACCTAGAAAC 330 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42392683704 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5