BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51000.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495165 jgi|Araly1|495165|fgenesh2_kg.8__981__AT5G51000.1 348 6e-95
Ahg357348 jgi|Araly1|357348|fgenesh1_pg.C_scaffold_8001135 178 8e-44
> Ahg495165 jgi|Araly1|495165|fgenesh2_kg.8__981__AT5G51000.1
Length=932
Score = 348 bits (188), Expect = 6e-95
Identities = 314/368 (85%), Gaps = 35/368 (10%)
Strand=Plus/Plus
Query 8 CGATGTCTGATCTTTTC--CC-GGATTTGGTAGAAGAGATACTCTCTAGGGTTCCAATAA 64
||||||||||||||| | || |||||||||||||||||||||||||||| |||||||||
Sbjct 5 CGATGTCTGATCTTTCCGGCCGGGATTTGGTAGAAGAGATACTCTCTAGGCTTCCAATAA 64
Query 65 CATCTTTGAAAGCAGTGAAATTAACTTGTAAACAATGGAATG---ATTTATCCAAAGATT 121
||||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 65 CATCTTTGAGAGAAGTGAGATTAACTTGTAAACAATGGAATGATTATTTATCCAAAGATC 124
Query 122 CGAGCTTTACAAAAAACCATTATGGTAAAGAAGCCAAGGAGATTCAGGTGATCATGATAT 181
|||||||||||||||||||||||||||||||||||||||||||| | | | | | |
Sbjct 125 CGAGCTTTACAAAAAACCATTATGGTAAAGAAGCCAAGGAGATT-ATG-G--C-T--T-- 175
Query 182 GTGATTTAAAGGCTTGTTTAATGAGCGTCAATCTCCATAATCACAAAGACTTGGCAGATC 241
|| || || | | | | |||||||||||||||||||||||||||||||||||
Sbjct 176 GT--TT-AA----T-G---A--G--CGTCAATCTCCATAATCACAAAGACTTGGCAGATC 220
Query 242 CATCTATAAAGCAAATAGGTAAACTTAATCAAGTCGAAATA-GAT-AG-TG-TGTTTCAT 297
||||| ||||| ||||||||||||||||||||||| ||||| | | | | ||||||||
Sbjct 221 CATCTCTAAAGAAAATAGGTAAACTTAATCAAGTCAAAATAAG-TCAACTACTGTTTCAT 279
Query 298 TGTGATGGCTTATTATTATTGTTGTTATGCAACCCTAAGGATAACTCGAAGCTCATGGTT 357
|||||||| ||||| |||||| ||||||||||| |||||||||| || | ||||||||||
Sbjct 280 TGTGATGGTTTATTGTTATTGATGTTATGCAACGCTAAGGATAAGTCTAGGCTCATGGTT 339
Query 358 TGGAACCC 365
||||||||
Sbjct 340 TGGAACCC 347
Score = 279 bits (151), Expect = 2e-74
Identities = 260/310 (84%), Gaps = 18/310 (6%)
Strand=Plus/Plus
Query 798 TGATGCGTATGAGATGGGAATATGGATTACAACTAAGATTGAGCTCAATATAGTGTTGTG 857
|||| | ||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 633 TGATACATATGAGATGAAAATATGGATTACAACTAAGATTGAGCCCAATATAGTGTTGTG 692
Query 858 GAGCAAGTTCTTAAAAGTTGATAT--GAC-ATTGCCT-AACAGCTATTGGTTTGAAGATT 913
|||||| ||||||||||||||||| ||| |||| || || || | ||||||| | | |
Sbjct 693 GAGCAACTTCTTAAAAGTTGATATGAGACTATTGACTGAA-AGATTTTGGTTTCCATA-T 750
Query 914 TGAGTTTCTTCCTCGTCGACGAGAAGAAGAAAGTAGCAATGGTTAGTGA-ATTAGACAT- 971
|| | || ||| ||||||||||||||||||||||||||||| || || | || |||||
Sbjct 751 TG-GATT-TTCTTCGTCGACGAGAAGAAGAAAGTAGCAATGATTTGTCATAT-AGACAGC 807
Query 972 AGAAACGTGTAAGAACTACAAAACTTACATTCTCGGAGAGAATGGATACTACAGAGAAGT 1031
| ||||||| || ||||||||| || |||| | ||||||||||||||||||||||||||
Sbjct 808 A-AAACGTGGAACAACTACAAATCTCACATGGTTGGAGAGAATGGATACTACAGAGAAGT 866
Query 1032 GGA-TCTTAGAAAATCC-AAAGGTTGTGTCTACTTATGTGTTCTTATGTTCCAAGTTTGG 1089
| | | | |||||| || |||| || | |||| |||||| |||||||||||||||| ||
Sbjct 867 GAAATGT-AGAAAACCCGAAAG-TTAT--CTACATATGTGCTCTTATGTTCCAAGTTCGG 922
Query 1090 TGCAAATCCA 1099
||||||||||
Sbjct 923 TGCAAATCCA 932
Score = 156 bits (84), Expect = 4e-37
Identities = 167/204 (82%), Gaps = 18/204 (9%)
Strand=Plus/Plus
Query 457 TTTTATATGGGATACGACAGC-AACAACAACCACAAAATCTT-ATGGTTTTCGTCTATGT 514
||||||||||||||||||| | |||||||||||||||||||| | ||| |||||| |
Sbjct 373 TTTTATATGGGATACGACA-CAAACAACAACCACAAAATCTTGA-AGTTCTCGTCTTTCC 430
Query 515 ACCGTGAGTATGAAATCTACGATTTTAAGTCTGATGCGTGGACGGTTATTGATGTCAATA 574
|||||||||||||||||||||||||||||||| |||| |||| |||| ||||||| ||
Sbjct 431 ACCGTGAGTATGAAATCTACGATTTTAAGTCTAATGCATGGAGGGTT---GATGTCACTA 487
Query 575 CCGACCA-AGACCATATAATAGATA-A-TCAGCGTGTGTCCTTGAAGGGTAATGTTTACT 631
||||| | | ||||| | | | | | | | ||||||||||||||| |||| |||||
Sbjct 488 CCGACTGTA-AT-ATATA-TCGTTGGAGT-A-C-TGTGTCCTTGAAGGGCAATGCTTACT 541
Query 632 TTATTGCTCATGACATA-TTGAAA 654
|||||||||||| | | ||||||
Sbjct 542 GTATTGCTCATGAAA-AGTTGAAA 564
> Ahg357348 jgi|Araly1|357348|fgenesh1_pg.C_scaffold_8001135
Length=1056
Score = 178 bits (96), Expect = 8e-44
Identities = 215/269 (80%), Gaps = 22/269 (8%)
Strand=Plus/Plus
Query 139 CATTATGGTAAAGAAGCCAAGGAGATTCA-GGTGA-TCATGATATGTGATTTAAAGGCTT 196
|||| |||||||| ||| ||||||||| | ||| | ||||||| | | |||| ||||||
Sbjct 79 CATTGTGGTAAAGCAGCTAAGGAGATT-ATGGT-AGTCATGATGTATCATTTTGAGGCTT 136
Query 197 GTTTAATGAGCGTCAATCTCCATAATCACAAAGACTTGGCAGATCCATCTATAAAGCAAA 256
|||||||||| ||||||||||||| || |||||||||| |||||||| ||||||| |||
Sbjct 137 ATTTAATGAGCATCAATCTCCATAACCATAAAGACTTGGTAGATCCATTTATAAAGAAAA 196
Query 257 TAGGTAAACTTAATCAAGTCGAAATA-GATAG-TGTGTTTCATTGTGATGGCTTATTATT 314
||||||||||||| || ||| ||||| | | | || ||||| || | |||||||| ||
Sbjct 197 TAGGTAAACTTAAACACGTCAAAATATG-T-GAAGTATTTCACTGCAACGGCTTATTGTT 254
Query 315 ATTGTTGTTATGCAACCCTAAGGATAACTCGAAGCTCATGGTTTGGAACCCTTACTT-GG 373
| || | | | || | | | || | | |||||| |||| |||||||| || || ||
Sbjct 255 A-TG-CG---T-C-ACTC-ATGAAT-A-T--AAGCTCGTGGTATGGAACCCGTA-TTCGG 301
Query 374 GTCAAACCAGGTGGATCCAACCTAGAAAC 402
|||||||||||||||||||||||||||||
Sbjct 302 GTCAAACCAGGTGGATCCAACCTAGAAAC 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5