BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G51010.1

Length=873
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331490 jgi|Araly1|331490|fgenesh1_pm.C_scaffold_8000833           634    0.0  
  Ahg949647 jgi|Araly1|949647|scaffold_801534.1                        248    5e-65


> Ahg331490 jgi|Araly1|331490|fgenesh1_pm.C_scaffold_8000833
Length=462

 Score =  634 bits (343),  Expect = 0.0
 Identities = 431/471 (92%), Gaps = 15/471 (3%)
 Strand=Plus/Plus

Query  50   ATGGCGATGCAGCTTCCTCCGACGACACTTTACGCCGGAAGATCCTCCGTGGTCTTACCT  109
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |   |
Sbjct  1    ATGGCGATGCAGCTTCCTCCGACGACTCTTTACGCCGGAAGATCCTCCGTGGTC-T---T  56

Query  110  CCGACGACTCCAACCCTCCAGAGATCATCTTTCTTGCCTTATTACTCGATGAGGCTACTC  169
               ||  ||||||||||||| | |||||||||||||||||||||||||||||| ||||| 
Sbjct  57   ---AC--CTCCAACCCTCCACATATCATCTTTCTTGCCTTATTACTCGATGAGACTACTT  111

Query  170  GGAAACAAGAAGTCTCTTTCC-AA-----ATCCTCTGCTCCTAGATTCTCCATGCGTGTC  223
            || |||||||||||||||||| ||     |||||||||||||||||||||||||||||||
Sbjct  112  GGCAACAAGAAGTCTCTTTCCAAATCTTCATCCTCTGCTCCTAGATTCTCCATGCGTGTC  171

Query  224  TCCTCTAAGCAAGCCTATATTTGCCGTGATTGCGGGTATATTTACAATGATAGAACTCCA  283
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  172  TCCTCCAAGCAAGCCTATATTTGCCGTGATTGCGGGTATATTTACAATGATAGAACTCCA  231

Query  284  TTTGACAAGTTACCTGATAACTATTTCTGTCCAGTGTGTGCTGCTCCTAAACGGCGGTTT  343
            || |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  232  TTCGACAAGTTGCCTGATAACTATTTCTGTCCAGTGTGTGCTGCTCCTAAACGGCGTTTT  291

Query  344  AGAGCTTACATGCCTGATGTGAGCAAGAATGTCAACGACAAAGATGTGAGAAAGGCTAGA  403
            ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  292  AGACCGTACATGCCTGATGTGAGCAAGAATGTCAACGACAAAGATGTGAGAAAGGCCAGA  351

Query  404  AAAGCTGAGCTCCAAAGAGACGAAGCCGTCGGGAAGGCTCTACCTATAGGAATTGCAGTT  463
            |||||||||||||||||||||||||| |||||||||||| | ||||||| |||||| |||
Sbjct  352  AAAGCTGAGCTCCAAAGAGACGAAGCTGTCGGGAAGGCTTTGCCTATAGCAATTGCGGTT  411

Query  464  GGGGTTTTAGCTCTCGCAGCTCTTTACTTCTATGTCAATAGCACCTCATGA  514
            || ||||| |||||||| |||||||||||||||||||| | || | |||||
Sbjct  412  GGAGTTTTGGCTCTCGCGGCTCTTTACTTCTATGTCAACAACAACACATGA  462


> Ahg949647 jgi|Araly1|949647|scaffold_801534.1
Length=850

 Score =  248 bits (134),  Expect = 5e-65
 Identities = 156/166 (94%), Gaps = 3/166 (2%)
 Strand=Plus/Minus

Query  709  AGAAAAGGGGGTGCAA-ATTGGCTAGTCTTGCAAGATGAGGGACCCTTGGATTGGTTTAT  767
            |||||| || ||| || ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  850  AGAAAA-GGAGTG-AACATTGGCTAGTCTTGCAAAATGAGGGACCCTTGGATTGGTTTAT  793

Query  768  CGATAGAAGATTGATAAAGGATGTTCAAAGCAGACAAGTTTTCGTTGATGCTCGATGATG  827
            | || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct  792  CAATTGAAGATTGATAAAGGATGTTCAATGCAGACAAGTTTTCGTTGATGCTTGATGATG  733

Query  828  TCGCTGGCTTGAACTCGTACGGACCTTCCTTTGGTCCCCAAACCTG  873
            |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  732  TCGCTGGCTTGAACTCGTACGGTCCTTCCTTTGGTCCCCAAACCTG  687



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32328233616


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5