BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51020.1
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949647 jgi|Araly1|949647|scaffold_801534.1 1404 0.0
> Ahg949647 jgi|Araly1|949647|scaffold_801534.1
Length=850
Score = 1404 bits (760), Expect = 0.0
Identities = 823/853 (96%), Gaps = 5/853 (1%)
Strand=Plus/Plus
Query 93 ACTAAATTCGAAACCTTTTAATGGGTACCGAGTCGGGTTCGGATCCAGAATCGAGCTCAA 152
||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1 ACTAACTTCGAAACCTTTTAATGGGTACTGAGTCGGGTTCGGATCCGGAATCGAGCTCAA 60
Query 153 ACGGGTGGAGCCGTGCTCGTGGTCTAGTTGTCAAGACTCTGGTTTTAATTGGCGGTGCTC 212
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 ACGGTTGGAGCCGTGCTCGTGGTCTAGTGGTCAAGACTCTGGTTTTAATTGGCGGTGCTC 120
Query 213 TTCTCATCAAGCGTCTCACTAAATCCACCACTCGTAGAGATCACGCCCGTGTCGTCTCTC 272
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TTCTCATCAAGCGTCTCACTAAATCCACCACTCGTAGAGATCACGCTCGTGTCGTCTCTC 180
Query 273 GTTCTCTCACCGGAGAGAAGTTTACGAGGGAGCAAGCGTCAAGAGATCCTGATAATTACT 332
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 181 GTTCTCTCACCGGAGAGAAGTTTACAAGGGAGCAAGCGTCAAGAGATCCTGAGAATTACT 240
Query 333 TCAACATAAGAATGCTGAGTTGTCCAGCTGCTGAAATGGTGGATGGTTCAGAGGTTTTGT 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCAACATAAGAATGCTGAGTTGTCCAGCTGCTGAAATGGTGGATGGTTCAGAGGTTTTGT 300
Query 393 ATCTCGAACAGGCATTTTGGAGGACTCCTCAGAAACCGTTTCGACAAAGATTATATATGG 452
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 ATCTCGAACAGGCATTTTGGAGGACTCCACAGAAACCGTTTCGACAAAGATTATATATGG 360
Query 453 TGAAACCGTGTCCAAAAGAGCTAAAATGTGATGTTGAGGTAAGTTCATATGCGATCAGAG 512
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 361 TTAAACCGTGTCCAAAAGAGCTAAAATGTGATGTCGAGGTAAGTTCATATGCGATCAGAG 420
Query 513 ATGCTGAGGAATACAAAAA-TTTCTGTGACCGGCCTAAGGACCAACGCCCACTTCCTGAA 571
||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 421 ATGCTGAGGAATACAAAAACTTT-TGTGACCGCCCTAAGGACCAACGCCCACTTCCTGAA 479
Query 572 GAAGTTATTGGTGACATTGGAGAGCATTTGACGACTATACACCTGAATTGTTGTGACCGT 631
|||||||||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||
Sbjct 480 GAAGTTATTGGTGATATTGGGGAGCATTTGACAACTATACACCTCAATTGTTGCGACCGT 539
Query 632 GGGAAACGTTGCTTGTACGAAGGCTCAACTTCACCTGGTGGATTTCCAAATTCATGGAAC 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGGAAACGTTGCTTGTACGAAGGCTCAACTTCACCTGGTGGATTTCCAAATTCATGGAAC 599
Query 692 GGGGCTAGCTATTGTACTTCAGATCTTGCAGTTCTGAAAAACAATGAGATACACCTCTGG 751
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 600 GGGGCTAGCTATTGTACTTCAGATCTTGCAGTTCTGAAAAACAGTGAGATACACCTCTGG 659
Query 752 GATCGCGGCTTTGATGAGAATCGAAACCAGGTTTGGGGACCAAAGGAAGGTCCGTACGAG 811
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 660 GATCGCGGCTTTGATGAGAATCGAAACCAGGTTTGGGGACCAAAGGAAGGACCGTACGAG 719
Query 812 TTCAAGCCAGCGACATCATCGAGCATCAACGAAAACTTGTCTGCTTTGAACATCCTTTAT 871
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 720 TTCAAGCCAGCGACATCATCAAGCATCAACGAAAACTTGTCTGCATTGAACATCCTTTAT 779
Query 872 CAATCTTCTATCGATAAACCAATCCAAGGGTCCCTCATCTTGCAAGACTAGCCAAT-TTG 930
|||||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 780 CAATCTTCAATTGATAAACCAATCCAAGGGTCCCTCATTTTGCAAGACTAGCCAATGTT- 838
Query 931 CACCCCCTTTTCT 943
||| || ||||||
Sbjct 839 CACTCC-TTTTCT 850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42240192036
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5