BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51030.1
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495168 jgi|Araly1|495168|fgenesh2_kg.8__984__AT5G51030.1 1753 0.0
> Ahg495168 jgi|Araly1|495168|fgenesh2_kg.8__984__AT5G51030.1
Length=1111
Score = 1753 bits (949), Expect = 0.0
Identities = 1060/1114 (95%), Gaps = 6/1114 (1%)
Strand=Plus/Plus
Query 2 TGGGGGATTGCACCTTTTGACCCACAAAAAGGATGAGAAAATTATGTGAGAGGGAGATGA 61
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1 TGGGGGATTGCACCTTTTGACCCACAAAAAGGATGAGAAAATTACGTAAGAGGGAGATGA 60
Query 62 GAACGACGACGAAGCTCTGTGTTCTTTCTTGCCTCCTCTTATCGTGAAAAT-AAACATAC 120
|||||||||||||||||||||||| ||| ||||||||||| ||| ||||| ||||| ||
Sbjct 61 GAACGACGACGAAGCTCTGTGTTCGTTCGTGCCTCCTCTTGTCG-AAAAATAAAACAAAC 119
Query 121 TTAGGATCGTag-aagagagaaaataagaagaaagatggtaggaagcaaagaaaaatcga 179
|||||||||| | ||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 120 TTAGGATCGT-GAAAGAGAGAAAATAAGGAGAAATATGGTAGGAAGCAAAGAAAAATCGA 178
Query 180 aagagaaacgagataagagaCTCCAAGAGATCTCCCTCCTTCGTACTATTCCCTATTCTG 239
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 179 AAGAGAAACGAGATAAGAGACTCCAAGAGATCTCCCTCCTACGTACAATTCCCTACTCTG 238
Query 240 ATCACCAGAGGTGGTGGACCTCTGAAACCGTGGCGGTGGTAACAGGTGCGAATAGAGGAA 299
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 239 ATCACCAGAGGTGGTGGACCTCTGAAACCGTGGCGGTGGTAACAGGTGCAAATAGAGGGA 298
Query 300 TAGGATTTGAGATGGTGAGACAATTGGCTGGACATGGACTAACAGTTATTCTAACATCAA 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 TAGGATTTGAGATGGTGAGACAATTGGCTGGACATGGATTAACAGTTATTCTAACATCAA 358
Query 360 GAGACGAGAATGTAGGCGTCGAAGCCGCCAAGATCCTTCAAGAAGGTGGATTCAATGTTG 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAGACGAGAATGTAGGTGTCGAAGCCGCCAAGATCCTTCAAGAAGGTGGATTCAATGTTG 418
Query 420 ATTTCCACCGCCTCGATATCTTGGACTCTTCCTCAATCCAAGAGTTTTGCGA-ATGGATT 478
||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 419 ATTTCCACCGCCTCGATATCTTGGACTCTTCCTCAATTCAAGAGTTTTGC-ATATGGATT 477
Query 479 AAAGAAAAATATGGATTTATTGATGTTTTAATTAATAATGCAGGAGTAAACTACAATGTT 538
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 478 AAAGAAAAATATGGATTGATTGATGTTTTAATAAATAATGCAGGAGTAAACTACAATGTT 537
Query 539 GGATCAGATAACTCTGTTGAATTCTCGCATATGGTTATATCTACCAACTACTATGGCACC 598
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 538 GGATCAGATAACTCCGTTGAGTTCTCGCATATGGTTATATCTACCAACTACTATGGTACC 597
Query 599 AAGAACATAATCAACGCCATGATTCCACTAATGAGACATGCTTGTCAAGGAGCTCGTATT 658
|||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 598 AAGAACATAATCAAAGCCATGATTCCATTGATGAGACATGCTTGTCAAGGAGCTCGTATT 657
Query 659 GTCAATGTCACTTCAAGGCTCGGTAGATTAAAAGGCCGACACAGTAAACTTGAGAATGAA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GTCAATGTCACTTCAAGGCTCGGTAGATTAAAAGGCCGACACAGTAAACTTGAGAATGAA 717
Query 719 GACGTGAGAGCCAAGCTTATGGATGTGGACTCTCTAACTGAAGAAATCGTTGACAAAACA 778
| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 718 GCCGTGAGAGCGAAGCTTATGGATGTGGATTCTCTAACAGAAGAAATCGTTGACAAAACA 777
Query 779 GTATCAGAGTTTTTGAAACAAGTGGAAGAAGGAACATGGGAATCTGGAGGTTGGCCACAT 838
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GTCTCAGAGTTTTTGAAACAAGTGGAAGAAGGAACATGGGAATCTGGAGGTTGGCCACAT 837
Query 839 TCCTTCACAGACTACTCTGTCTCCAAAATGGCGGTGAACGCATACACAAGAGTACTAGCT 898
|| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 838 TCTTTCACAGACTACTCTGTCTCGAAAATGGCGGTGAATGCATACACAAGAGTACTAGCA 897
Query 899 AAAGAACTATCCGAGAGACCAGAGGGAGAGAAGATATATGCAAACTGTTTTTGTCCCGGT 958
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 898 AAAGAACTATCTGAGAGACCAGAGGGAGAGAAAATATATGCAAACTGCTTTTGTCCCGGT 957
Query 959 TGGGTGAAAACCGCAATGACAGGCTATGCAGGGAACGTTTCAGCAGAAGATGGAGCTGAC 1018
|||||||||||||||||||| || |||||||||||| | |||||||||||||||||||||
Sbjct 958 TGGGTGAAAACCGCAATGACGGGTTATGCAGGGAACATCTCAGCAGAAGATGGAGCTGAC 1017
Query 1019 ACTGGAGTCTGGCTTGCATTGCTTCCTGATCAAGCTATCACCGGAAAGTTCTTCGCCGAG 1078
||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1018 ACTGGGGTTTGGCTTGCATTGCTTCCTGATCAAGCTATCACCGGAAAGTTCTTTGCTGAG 1077
Query 1079 AGACGTGAGATCAGTTTCTAAGGAAAAGATTGGA 1112
||||||||||||| ||||||| || |||||||||
Sbjct 1078 AGACGTGAGATCAATTTCTAAAGAGAAGATTGGA 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44870673309
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5