BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51040.3
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495170 jgi|Araly1|495170|fgenesh2_kg.8__986__AT5G51040.1 878 0.0
> Ahg495170 jgi|Araly1|495170|fgenesh2_kg.8__986__AT5G51040.1
Length=732
Score = 878 bits (475), Expect = 0.0
Identities = 680/770 (88%), Gaps = 50/770 (6%)
Strand=Plus/Plus
Query 37 aaaaaTGGCTACCCGAAAAGCTCTGATCAACGTTCACCGGATCATTCGCTCCACCGCCGT 96
||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1 AAAAATGGCTACCCGAAGAGCTCTGATTAACGTCCACCGGATCATTCGCTCCACCGCCGT 60
Query 97 GGTTGGCCGGA-GCTCTATCATTCCTGCCGCCGCTAACCGGTCATATCCTATTATATTCC 155
||| ||| || |||| || |||||||||||||||||||| ||||||||||
Sbjct 61 GGTAAGCC-GACGCTCCGTCGTTCCTGCCGCCGCTAACCGG---------ATTATATTCC 110
Query 156 GGAATGGAGTTGATTTGGGGGCGAGATTCTTCTGTGAGAACACTGCGTCTGCCCAGAATT 215
||||||||||||||| |||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct 111 GGAATGGAGTTGATTCGGGGACGAGATTCTTCTGTGGGAACACTGCTTCTGCCCAGAATT 170
Query 216 TCGATATTGATCTCTCTAACGAAGAGAATAAGAGAAGAACGATCAACAGATTGTTGTATA 275
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TTGATATTGATCTCTCTAACGAAGAGAATAAGAGAAGAACGATCAACAGATTGTTGTATA 230
Query 276 GGAGCAAGCAAAGAGGGTTTTTGGAACTTGATCTTGTTTTGGGGAATTGGGTTGAGGAGA 335
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GGAGCAAGCAACGAGGGTTTTTGGAACTTGATCTTGTTTTGGGGAATTGGGTTGAGGAGA 290
Query 336 ATGTTAATTCCATGGACGAAAATGGTGTTAAATCCCTAATTCATGTCCTCAATTTGGTAG 395
||||||||||||||||||||||||||||||||||||| | | | || | | |
Sbjct 291 ATGTTAATTCCATGGACGAAAATGGTGTTAAATCCCT-A---A--T--TC-A-----T-G 335
Query 396 AATCTGAAGCTACCAAATTACTTGAAAACCCTGATCTCTGGAAATGGCTAACTGAACAGG 455
|| || | |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 336 --TC-----CT--C-AATT--TGGAAAACCCTGATCTCTGGAAATGGCTAACTGAACAGG 383
Query 456 AACAGCCTCCGGAAGCAGTGAGTTCAAATCCGGTGTTCTCGGCGTTACACGAGAAAGTCA 515
||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 384 AACAGCCTCCGGAGGCAGTGAGCTCTAATCCGGTGTTCTCCGCGTTACACGAGAAAGTCA 443
Query 516 TGAAGAATCTGAACAAGCATGCAGCGCCAGAGACTCGTGCAGCGGCTGGACAGCCCTGGG 575
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 444 TGAAGAATCTGAACAAGCATGCAGCACCAGAGACACGCGCAGCGGCTGGACAGCCCTGGG 503
Query 576 TCAGAGGATGGGACGATTTCAAGAGAGGCCGTGATGCTCCCATTTCAGGGAATCAGTAAA 635
||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 504 TCAAAGGCTGGGACGATTTCAAGAGAGGCCGTGATGCTCCTATTTCAGGGAACCAGTAAA 563
Query 636 CATAAACTCCTCTTTTCAAAAAGTATCAAAGTGAAAATAAGTTATGATATGAA--A---- 689
|||||||||| |||| ||||| ||| |||| |||||||| ||||||||||||| |
Sbjct 564 CATAAACTCCGCTTTACAAAA-GTAACAAACTGAAAATACGTTATGATATGAAGTATCTG 622
Query 690 A---TAGATACCAAGTAGTAGCAACCATTACTTT-ACTATTGTATTAATAAAGAACCAGG 745
| |||||| || | ||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct 623 AAAATAGATATTAAATCGTAGCAACCATTACTTTTACTGTTGCATTAATAAAGAACCAGG 682
Query 746 CCGTGAAGAAGGTCCATGG-CGTTGAGATAATTACAGTGTTGTGTCTTGT 794
||||||||||||||||| | |||||||||||||||| ||||||||||||
Sbjct 683 CCGTGAAGAAGGTCCATTGACGTTGAGATAATTACAAAGTTGTGTCTTGT 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099496114
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5