BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51050.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357353 jgi|Araly1|357353|fgenesh1_pg.C_scaffold_8001140 2355 0.0
Ahg487557 jgi|Araly1|487557|fgenesh2_kg.6__691__AT5G07320.1 645 0.0
> Ahg357353 jgi|Araly1|357353|fgenesh1_pg.C_scaffold_8001140
Length=1509
Score = 2355 bits (1275), Expect = 0.0
Identities = 1399/1461 (96%), Gaps = 0/1461 (0%)
Strand=Plus/Plus
Query 4 GAAGCTACGAAGTCGTCGAAACAAAATTGTTGCAACCCGGTTAAGAAACCCGGACCCGTT 63
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 49 GAAGCTACGAAATCGTCGAAACACGGTTGTTGCAACCCGGTTAAGAAACCCGGACCCGTT 108
Query 64 TCAATTGATCATGTTCTCTTAGCTCTCCGTGAGACAAGAGAAGAGCGAGATTTACGAATC 123
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 109 TCAATGGATCATGTTCTCTTAGCTCTCCGTGAGACGAGAGAAGAGCGAGATTTACGAATC 168
Query 124 AGGAGCTTATTCAGTTTCTTTGATTCTGAGAATGTTGGTTACTTAGATTGTGCTCAAATT 183
|||||||| |||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 169 AGGAGCTTGTTCAATTTCTTCGATTCTGAGAATGTTGGTTACTTGGATTGTGCTCAAATC 228
Query 184 GAGAAGGGGTTATGTGCGCTTCAAATCCCAAGTGGGTATAAATACGCTAAGGAGTTGTTT 243
|||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 229 GAGAAGGGTTTGTGTGCGCTTCAAATCCCAAGTGGGTATAAATATGCAAAGGAGTTGTTT 288
Query 244 AGGGTTTGTGATGCGAATAGAGATGGGCGTGTGGATTATCATGAGTTTCGTAGATATATG 303
|||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 289 AGGGTTTGTGATGCCAATCGAGATGGGCGTGTTGATTATCATGAGTTTCGTAGATATATG 348
Query 304 GATGATAAGGAGCTTGAGCTGTATAGAATCTTTCAAGCTATTGATGTTGAGCATAATGGT 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GATGATAAGGAGCTTGAGCTGTATAGAATCTTTCAAGCTATTGATGTTGAGCATAATGGT 408
Query 364 TGTATTTCTCCTGAGGGACTTTGGGATTCACTCGTTAAAGCTGGGATTGAGATAAAAGAT 423
|| |||||||||||||| || |||||||| |||||||| ||||||||||||||||| |||
Sbjct 409 TGCATTTCTCCTGAGGGGCTCTGGGATTCTCTCGTTAAGGCTGGGATTGAGATAAATGAT 468
Query 424 GAGGAGCTTGCTCGTTTTGTGGAACATGTTGACAAGGACAATGATGGAATCATTATGTTT 483
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 469 GAGGAGCTAGCTCGTTTTGTGGAACATGTTGACAAGGACAATGATGGAATTATAATGTTT 528
Query 484 GAAGAATGGAGAGATTTTCTTTTGCTGTACCCTCACGAAGCTACCATTGAAAATATATAC 543
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 529 GAAGAATGGAGAGATTTTCTTTTGTTGTACCCTCATGAAGCTACCATTGAAAATATATAC 588
Query 544 CATCACTGGGAAAGAGTATGTCTTGTAGATATTGGAGAACAAGCTGTAATTCCAGAAGGC 603
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 589 CATCACTGGGAAAGAGTATGCCTTGTAGATATTGGAGAACAAGCTGTGATTCCGGAAGGC 648
Query 604 ATCAGCAAACATATAAAGAGGAGTAACTATTTCATCGCAGGTGGCATAGCTGGTGCAGCT 663
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 649 ATCAGCAAACATGTAAAGAGGAGCAACTATTTCATCGCAGGTGGCATAGCTGGTGCAGCT 708
Query 664 TCTAGGACTGCTACTGCACCTCTAGATCGCTTAAAAGTTCTTTTGCAAATTCAGAAAACC 723
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TCTAGGACTGCTACTGCACCTCTAGATCGCTTAAAAGTTCTTTTGCAAATTCAGAAAACT 768
Query 724 GATGCTAGAATCCGAGAAGCCATAAAGTTGATATGGAAGCAGGGTGGAGTTAGAGGtttt 783
||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 769 GATGCTAAAATCCGAGAAGCCATAAAGTTGATATGGAAGCAGGATGGAGTTAGGGGTTTT 828
Query 784 tttCGAGGTAACGGGTTGAATATTGTGAAGGTAGCACCAGAGAGTGCCATCAAGTTCTAT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 829 TTTCGAGGTAACGGGTTGAATATTGTGAAGGTAGCACCAGAGAGTGCCATCAAATTCTAT 888
Query 844 GCATATGAGCTTTTCAAAAACGCTATCGGTGAAAACATGGGTGAAGACAAAGCGGATATA 903
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 889 GCATATGAGCTTTTCAAAAACGCTATTGGTGAAAACATGGGTGAAGACAAAGCGGATATA 948
Query 904 GGCACAACAGTTAGACTTTTTGCTGGAGGAATGGCTGGTGCAGTAGCTCAAGCCTCTATA 963
|||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 949 GGCACAACAGCTAGACTTTTTGCTGGAGGTATGGCTGGTGCAGTGGCTCAAGCCTCTATA 1008
Query 964 TACCCTTTAGATCTTGTGAAAACTCGGTTGCAGACTTACACGAGCCAAGCAGGTGTTGCT 1023
|||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||||| |
Sbjct 1009 TACCCTTTGGATCTTGTGAAAACTCGGTTACAGACTTGCACAAGCCAAGCAGGTGTTGTT 1068
Query 1024 GTTCCCAGGCTTGGAACGCTCACCAAAGATATATTGGTTCATGAGGGTCCACGTGCCTTC 1083
||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 1069 GTTCCCAGGCTTGGAACGCTCACCAAAGACATACTGGTTCATGAGGGTCCACGCGCCTTT 1128
Query 1084 TACAAAGGTCTTTTCCCTTCTCTTCTTGGGATTATTCCTTACGCGGGTATTGACCTTGCT 1143
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 1129 TACAAAGGTCTTTTCCCTTCTCTTCTCGGGATTATTCCTTATGCGGGTATCGACCTTGCT 1188
Query 1144 GCATATGAGACATTAAAGGACTTGTCCAGGACATATATTCTTCAAGACGCTGAACCAGGT 1203
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GCGTATGAAACATTAAAGGACTTGTCCAGGACATATATTCTTCAAGACGCTGAACCAGGT 1248
Query 1204 CCGCTCGTGCAACTAGGATGTGGAACAATCTCAGGAGCTCTTGGAGCAACCTGTGTCTAT 1263
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 1249 CCGCTCGTGCAACTAGGATGCGGAACAATCTCAGGAGCTCTTGGAGCAACCTGCGTTTAT 1308
Query 1264 CCTTTGCAGGTTGTGAGAACAAGAATGCAAGCGGAACGAGCAAGAACCTCGATGTCAGGA 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1309 CCTTTGCAGGTTGTGAGAACAAGAATGCAAGCGGAACGAGCAAGAACCTCGATGTCAGGA 1368
Query 1324 GTATTCAGGAGAACAATAAGTGAAGAAGGTTACAGAGCACTCTACAAAGGGCTACTACCG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1369 GTATTCAGGAGAACAATAAGTGAAGAAGGTTACAGAGCACTCTACAAAGGGCTTCTACCG 1428
Query 1384 AACCTTCTAAAGGTAGTTCCTGCTGCAAGCATTACATATATGGTTTACGAAGCAATGAAA 1443
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 AACCTTCTAAAGGTTGTTCCTGCTGCAAGCATTACATATATGGTTTACGAAGCAATGAAA 1488
Query 1444 AAGAGTCTAGAACTTGATTGA 1464
|||||||||||||||||||||
Sbjct 1489 AAGAGTCTAGAACTTGATTGA 1509
> Ahg487557 jgi|Araly1|487557|fgenesh2_kg.6__691__AT5G07320.1
Length=1948
Score = 645 bits (349), Expect = 0.0
Identities = 1096/1444 (76%), Gaps = 102/1444 (7%)
Strand=Plus/Plus
Query 46 AAGAAACCCGGACCCGTTTCAATTGATCATGTTCTCTTAGC-TCTCCGTGAGAC-A-AGA 102
|||||||| | | |||| | || || |||||||| || || | | |||||||| | ||
Sbjct 343 AAGAAACCTGTATCCGTCACGATGGAGCATGTTCTATTGGCGT-TACGTGAGACTATGGA 401
Query 103 -GAAGAGCGAGATTTACGAATCAGGAGCTT-ATTCAGTTTCTTTGATTCTGAGAATGTT- 159
| |||| |||| | | || || | || || || | |||||| ||| | |||| ||
Sbjct 402 TG-AGAGAGAGA-TCAGGATTC-GTAGTTTGTTTGA-TTTCTTCGATAATTCGAAT-TTA 456
Query 160 -GGTTACTTAGATTGTGCTCAAATTGAGAAGGGGT-TATG-TGCGCTTCAAATCCCAAGT 216
|||| |||||||| ||| || || || || |||| | || | ||||||| || || |
Sbjct 457 GGGTT-CTTAGATTATGCCCAGATCGA-AAAGGGTCT-TGCTTCGCTTCAGATTCCTCCT 513
Query 217 GGGTATAAATACGCTAAG-GAGTTGTTTAGGGTTTGTGATGCGAATAGAGATGGGCGTGT 275
| ||| || |||||| || || |||||||| || || || || ||| |||||||||||||
Sbjct 514 GAGTACAAGTACGCT-AGAGATTTGTTTAGAGTCTGCGACGCCAATCGAGATGGGCGTGT 572
Query 276 GGATTATCATGAGTTTCGTAGATATATGGATGATAAGGAGCTTGAGCTGTATAGAATCTT 335
|||||| || ||||||||| |||| || |||| ||||||||||||||||||||| || ||
Sbjct 573 GGATTACCAGGAGTTTCGTCGATACATTGATGCTAAGGAGCTTGAGCTGTATAGGAT-TT 631
Query 336 T-CAAGCTATTGATGTTGAGCATAATGGTTGTATTTCT-CCTGAGGGA-CTTTGGGATTC 392
| ||||| |||||||||||||| ||||| || |||| | ||||| ||| |||||||| |
Sbjct 632 TCCAAGCCATTGATGTTGAGCACAATGGCTGCATTT-TGCCTGA-GGAGCTTTGGGAGGC 689
Query 393 ACTCGTTAAAGCTGGGATTGAGATAAAAGATGAGGAGCTTGCTCGTTTTGTGGAACATGT 452
|| ||||| || || |||||||| | |||||||| || |||||||||||||| |||||
Sbjct 690 TCTTGTTAAGGCCGGCATTGAGATCGATGATGAGGAACTCGCTCGTTTTGTGGAGCATGT 749
Query 453 TGACAAGGACAATGATGGAATC-ATTATGTTTGAAGAATGGAGAGATTTTCTTTTGCTGT 511
||| ||||||||| |||||| | || | |||||||||||||||||||||||||||| | |
Sbjct 750 TGATAAGGACAATAATGGAA-CTATAACGTTTGAAGAATGGAGAGATTTTCTTTTGTTAT 808
Query 512 ACCCTCACGAAGCTACCATTGAAAATATATACCATCACTGGGAAAGAGTATGTCTTG-TA 570
||||||| ||||| || |||||||| || || |||||||||||||| || || |||| ||
Sbjct 809 ACCCTCATGAAGCCACTATTGAAAACATTTATCATCACTGGGAAAGGGTGTG-CTTGATA 867
Query 571 GATATTGGAGAACAAGCTGTAATTCCAGAAGGCATCAGCAAACATAT-AAAGAGGAGTA- 628
|||||||| || |||||||| || || || || || ||||||||| | ||| || || |
Sbjct 868 GATATTGGGGAGCAAGCTGTTATACCGGATGGTATAAGCAAACATGTGAAA-AGAAGCAG 926
Query 629 ACTATTTCATCGCAGGTGG-CATAGCTGGTGCAGCTTCTAGGACTGCTACTGCACCTCTA 687
| || ||| |||| ||||| | |||| || || | |||||| |||||||| || |||||
Sbjct 927 ATTACTTC-TCGCTGGTGGAC-TAGCCGGAGCTGTTTCTAGAACTGCTACCGCGCCTCTG 984
Query 688 GATCGCTTAAAAGTTCTTTTGCAAATTCAGAAAA-C-CGATGCTAGAA-TCCGA--GAAG 742
|||||| | |||||| |||||||| |||| || | | | || || ||| ||
Sbjct 985 GATCGCCTGAAAGTTGTTTTGCAAGTTCA-AAGGGCAC-ACGC-AGGGGTCCTCCCGA-- 1039
Query 743 CCATAAAGTTGATATGGA-AGCAGGGTGGAGTTAGA-GG-tttttttCGAGGTAACGGGT 799
|||| ||| |||||||| || || | |||| || || ||||||| ||||||| ||||
Sbjct 1040 CCATTAAGAAGATATGGAGAGAAGA-TA-AGTT-GATGGGTTTTTTTAGAGGTAATGGGT 1096
Query 800 TGAATATTGTGAAGGTAGCACCAGAGAGTGCCATCAAGTTCTATGCATATGAGCTTTTCA 859
| ||| | ||||||| || || || || ||||| || || | ||| || || | | |
Sbjct 1097 TAAATGTCATGAAGGTTGCTCCTGAAAGCGCCATTAAATTTTGTGCTTACGAAATGCT-A 1155
Query 860 AAAACGCTATCGGTGAAAACATGGGTGAAGACAAAGCG-GATATAGGCACAA-CAGTTAG 917
||| | | || | | |||| | || | | | ||||| || |||| | | ||
Sbjct 1156 AAACC-C-AT-GAT-------TGGGGGG-GAGGATG-GTGATATTGGTACAAGCGGG-AG 1202
Query 918 ACTTTTTGCTGGAGGAATGGCTGGTGCAGTAGCTCAAGCCTCTATATACCCTTTAGATCT 977
||||| ||||| ||||||||||||||| |||||||| || |||| |||||| | |||||
Sbjct 1203 GCTTTTGGCTGGTGGAATGGCTGGTGCATTAGCTCAAACCGCTATTTACCCTATGGATCT 1262
Query 978 TGTGAAAACTCGGTTGCAGACTTACACGAGCCAA-GCAGGTGTTGCTGTTCCCAGGCT-T 1035
||||| |||||||| ||||||| | | || | ||||| | || | | | |
Sbjct 1263 AGTGAAGACTCGGTTACAGACTT----GTGTCAGTGAAGGTGGAAAGGCACCTAAGTTGT 1318
Query 1036 GGAACGCTCACCAAAGATATATTGGTTCATGAGGGTCCACGTGCCTTCTACAAAGGTCT- 1094
|||| |||||| |||||||||| ||| || ||||| || || || |||||||| |||||
Sbjct 1319 GGAA-GCTCACAAAAGATATATGGGTACAAGAGGGACCTCGGGCGTTCTACAAGGGTCTG 1377
Query 1095 TTTCCCTTCTCTTCTTGGGATTATTCCTTACGCGGGTATTGACCTTGCTGCATATGAGAC 1154
||||| |||||||||||||||||||||||| || || |||||||| |||||||| || ||
Sbjct 1378 TTTCC-TTCTCTTCTTGGGATTATTCCTTATGCAGGAATTGACCTCGCTGCATACGAAAC 1436
Query 1155 ATTAAAGGACTTGTCCAGGACATATATTCTTCAAGACGCTGAACCAGGTCCGCTCG-TGC 1213
|||| |||||||| || |||||||||||||| ||| |||| || ||||| || | | |
Sbjct 1437 GCTAAAAGACTTGTCGAGAACATATATTCTTCAGGACACTGAGCCGGGTCCTCT-GATAC 1495
Query 1214 AACT-AGGATGTGGAACAATC-TCAGGAGCTCTTGGAGCAACCTGTGTCTATCCTTTGCA 1271
| || || ||||||| | | |||||||||||||||||| | ||||| || || || ||
Sbjct 1496 AGCTGAGC-TGTGGAATGA-CATCAGGAGCTCTTGGAGCATCATGTGTTTACCCGTTACA 1553
Query 1272 GGTTGTGAGAACAAGAATGCAAGCGGA-ACGAGCAAGA-ACCTCGATGT--CAGGAGTAT 1327
||| || |||||||||||||||||||| | | || || || | ||| || |||| |
Sbjct 1554 GGTAGTAAGAACAAGAATGCAAGCGGATA-GTTCA-GATACGACAATGAAGCAAGAGT-T 1610
Query 1328 TCAGGAGAACAAT-AA-GTGAAGAAGGT-TACAGAGCACTCTACAAAGGGCTACT-ACCG 1383
| | || ||| || || | | |||||| | |||| |||||| ||| || || |||
Sbjct 1611 T-ATGAAAACGATGAAAG-GC-GAAGGTCTG-AGAGGTTTCTACAGAGGACT-CTTACCC 1665
Query 1384 AACCTTCT-AAAGGTAGTTCCTGCTGCAAGCATTACATATATGGTTTACGAAGCAATGAA 1442
|| ||||| |||| ||||||| || |||||||| || || || ||||| ||||| |||||
Sbjct 1666 AATCTTCTCAAAG-TAGTTCCAGCCGCAAGCATCACGTACATTGTTTATGAAGCTATGAA 1724
Query 1443 -AAA 1445
|||
Sbjct 1725 GAAA 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5