BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51080.1
Length=1489
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357356 jgi|Araly1|357356|fgenesh1_pg.C_scaffold_8001143 1290 0.0
Ahg313254 jgi|Araly1|313254|fgenesh1_pm.C_scaffold_1002034 503 2e-141
Ahg887530 jgi|Araly1|887530|Al_scaffold_0243_1 394 1e-108
> Ahg357356 jgi|Araly1|357356|fgenesh1_pg.C_scaffold_8001143
Length=969
Score = 1290 bits (698), Expect = 0.0
Identities = 883/965 (92%), Gaps = 41/965 (4%)
Strand=Plus/Plus
Query 318 CGTGCTCGTTCATACATTTCCTTGGTGCTGTTTAGGAAGTCCAGCTATGTCACTTCCCAC 377
||||| ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||
Sbjct 7 CGTGCGCGTTCATACATTTCCTTGGGGCTGCTTAAGAAGTCCAGCTATGTCAGTTCCCAT 66
Query 378 ATTCCATGGAATCAG-TGCTTCTATACATCTTTAAAAT-CTAGTTTAAAGCCTGCAAGTG 435
||||||||||||| | |||||||||| ||| ||||| | |||||||||||| || |||
Sbjct 67 ATTCCATGGAATC-GATGCTTCTATATGCCTTCAAAATAC-AGTTTAAAGCCTTCATGTG 124
Query 436 TGA--G----T-G--TATCTAGTGTTCATTGCTATTCCT-CAAGATCAAAGACTGCTAAA 485
||| | | | | ||||||||||||||||||| || |||||||||||||||| |||
Sbjct 125 TGACTGCACTTGGACTGTCTAGTGTTCATTGCTATT-CTACAAGATCAAAGACTGCCAAA 183
Query 486 TCAAAGATGTCAAAAAGCTCTGTTTCTGTTTCGGATTCGGATAAAGAGAAAGACGCCTTT 545
|||||||| || || | |||||||||||||||||||||||||||||||||||||||||
Sbjct 184 TCAAAGATTTC---AACCGCTGTTTCTGTTTCGGATTCGGATAAAGAGAAAGACGCCTTT 240
Query 546 TTTGTTGTTCGAAAGGGTGACATTGTTGGAATTTATAAGGATTTGATCGATTGTCAAGCT 605
|| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 241 TTCGTTGTTCGGAAGGGTGACATTATTGGAATTTATAAGGATTTGATTGATTGTCAAGCT 300
Query 606 CAAGTTGGATCTTCGGTTTATGATCCTCCAGTTAGCG-TT-T-A---TAAGGGATACTCG 659
||||||||||||||||| ||||||| ||||||||||| || | | |||||||||||||
Sbjct 301 CAAGTTGGATCTTCGGTATATGATCTTCCAGTTAGCGTTTATAAGGGTAAGGGATACTCG 360
Query 660 TTGCTCAAAGACAC--C-GAGGAGTGTCTTTCTACTGTTGGTTTGAAGAAACCACTCTAT 716
||||| |||||||| | ||||||| |||||||| |||||| |||||||||||||||||
Sbjct 361 TTGCTTAAAGACACGACGGAGGAGTATCTTTCTAGTGTTGGGCTGAAGAAACCACTCTAT 420
Query 717 GTTTTTAGAGCTTTAGACTTAAAAGAAGATATGTTTGGAGCTCTTACACCTTGTCTCTTC 776
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 421 GTTTTTAGAGCTTTTGACTTAAAAGAAGATATGTTTGGAGCTCTTACACCTTTTCTTTTC 480
Query 777 CAGGATCAACTTCCTTCAGCTTCCATGTCA---G--------TT-GAAAAGCTTGCTGAG 824
|||||||||||||||||||||||||||||| | || |||||||||||| ||
Sbjct 481 CAGGATCAACTTCCTTCAGCTTCCATGTCAGTTGTTAATCCTTTGGAAAAGCTTGCTAAG 540
Query 825 CTAG-AGCCATCTGCTGATACCTCATATGAAACTTGCATTATTGAGTTTGACGGTGCATC 883
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 C-AGAAGCCATCTGCTGATACCTCATATGAAACTTGCATTATTGAGTTTGACGGTGCATC 599
Query 884 AAAAGGAAATCCCGGTCTCTCTGGCGCTGCAGCTGTACTGAAAACTGAGGACGGAAGCTT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAAAGGAAATCCCGGTCTCTCTGGCGCTGCAGCTGTACTGAAAACTGAGGACGGAAGCTT 659
Query 944 GATTTTTAAAATGCGTCAAGGTTTAGGAATTGCCACAAATAATGCAGCTGAATATCATGG 1003
||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 660 GATTTGTAAAATGCGTCAAGGTTTAGGAATTGCCACAAACAATGCAGCAGAATATCATGG 719
Query 1004 ATTAATCCTAGGATTGAAGCATGCTATCGAGAAAGGTTACACGAAAATTAAAGTGAAAAC 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATTAATCCTAGGATTGAAGCATGCTATCGAGAAAGGTTACACGAAAATTAAAGTGAAAAC 779
Query 1064 TGACTCCAAGCTAGTTTGTATGCAGATGAAAGGTCAATGGAAGGTAAACCACGAGGTACT 1123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGACTCCAAGCTAGTCTGTATGCAGATGAAAGGTCAATGGAAGGTAAACCACGAGGTACT 839
Query 1124 CTCGAAGCTCCACAAGGAAGCAAAACAACTTAGCGACAAATGTCTCTCTTTTGAGATCAG 1183
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 CTCGAAGCTCCACAAGGAAGCAAAACAACTTAGCGACCAATGTCTCTCTTTTGAGATCAG 899
Query 1184 TCATGTACTTAGGAGTTTAAACTCTGATGCGGATGAACAGGCAAACATGGCTGCTCGTCT 1243
||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 TCAAGTACTAAGGAATTTAAACTCTGATGCGGATGAACAGGCAAATATGGCTGCTCGTCT 959
Query 1244 TTCTG 1248
|||||
Sbjct 960 TTCTG 964
> Ahg313254 jgi|Araly1|313254|fgenesh1_pm.C_scaffold_1002034
Length=1611
Score = 503 bits (272), Expect = 2e-141
Identities = 420/488 (86%), Gaps = 24/488 (5%)
Strand=Plus/Plus
Query 778 AGGATCAACTTCCTTCAGCTTC-----C--ATG-TCAGTT-GAAAAGCTTGCTGAGCTAG 828
|||||||||||||||||||||| | ||| || || ||||||||| | |||| |
Sbjct 563 AGGATCAACTTCCTTCAGCTTCTATATCTTATGATCCTTTGGAAAAGCTTTCAAAGCTGG 622
Query 829 AGCCATCTGCTGATACCTCATATGAAACTTGCATTATTGAGTTTGACGGTGCATCAAAAG 888
||||||||||||||| ||| | ||||||||| ||||||| ||||||||||||||||| |
Sbjct 623 AGCCATCTGCTGATATATCAGACGAAACTTGCTTTATTGAATTTGACGGTGCATCAAAGG 682
Query 889 GAAATCCCGGTCTCTCTGGCGCTGCAGCTGTACTGAAAACTGAGGACGGAAGCTTGATTT 948
||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 683 GAAATCCAGGTCTCTCTGGTGCAGCAGCGGTACTGAAAACTGAGGACGGAAGCTTGATTT 742
Query 949 TTAAAATGCGTCAAGGTTTAGGAATTGCCACAAATAATGCAGCTGAATATCATG-GATTA 1007
| | ||||||||||||| |||||||||||||| |||||||| ||||| || | | | |
Sbjct 743 GCAGACTGCGTCAAGGTTTGGGAATTGCCACAAACAATGCAGCAGAATACCACGCGCT-A 801
Query 1008 ATCCTAGGATTGAAGCATGCTATCGAGAAAGGTTACACGAAAATTAAAGTGAAAACTGAC 1067
||||||||||||||| ||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 802 ATCCTAGGATTGAAGTATGCTATTGAGAAAGGTTACAAGAAAATTAAAGTGAAAGGTGAC 861
Query 1068 TCCAAGCTAGTTTGTATGCAGAT------GA--AA-GGTCAATGGAAGGTAAACCACGAG 1118
||||||||||| |||||||||| || || || |||||||||||||||||||||
Sbjct 862 TCCAAGCTAGTCTGTATGCAGAAACAACAGATTAAAGGCCAATGGAAGGTAAACCACGAG 921
Query 1119 GTACTCTCGAAGCTCCACAAGGAAGCAAAACAACT-TAGCGACAAATGTCTCTCTTTTGA 1177
|||||| ||||||| |||||||||||||||||||| | || |||||||| ||||||||||
Sbjct 922 GTACTCGCGAAGCTACACAAGGAAGCAAAACAACTCT-GCAACAAATGTGTCTCTTTTGA 980
Query 1178 GATCAGTCATGTACTTAGGAGTTTAAACTCTGATGCGGATGAACAGGCAAACATGGCTGC 1237
|||||| |||||||| |||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 981 GATCAGCCATGTACTAAGGAATTTAAACGCTGATGCGGATGAACAGGCAAACTTGGCTG- 1039
Query 1238 TC-GTCTT 1244
|| |||||
Sbjct 1040 TCCGTCTT 1047
> Ahg887530 jgi|Araly1|887530|Al_scaffold_0243_1
Length=366
Score = 394 bits (213), Expect = 1e-108
Identities = 304/345 (88%), Gaps = 18/345 (5%)
Strand=Plus/Plus
Query 318 CGTGCTCGTTCATACATTTCCTTGGTGCTGTTTAGGAAGTCCAGCTATGTCACTTCCCAC 377
||||| ||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||
Sbjct 28 CGTGCGCGTTCATACATTTCCTTGGGGCTGCTTAAGAAGTCCAGCTATGTCAGTTCCCAT 87
Query 378 ATTCCATGGAATCAG-TGCTTCTATACATCTTTAAAAT-CTAGTTTAAAGCCTGCAAGTG 435
||||||||||||| | |||||||||| ||| ||||| | |||||||||||| || |||
Sbjct 88 ATTCCATGGAATC-GATGCTTCTATATGCCTTCAAAATAC-AGTTTAAAGCCTTCATGTG 145
Query 436 TGA--G----T-G--TATCTAGTGTTCATTGCTATTCCT-CAAGATCAAAGACTGCTAAA 485
||| | | | | ||||||||||||||||||| || |||||||||||||||| |||
Sbjct 146 TGACTGCACTTGGACTGTCTAGTGTTCATTGCTATT-CTACAAGATCAAAGACTGCCAAA 204
Query 486 TCAAAGATGTCAAAAAGCTCTGTTTCTGTTTCGGATTCGGATAAAGAGAAAGACGCCTTT 545
|||||||| || || | |||||||||||||||||||||||||||||||||||||||||
Sbjct 205 TCAAAGATTTC---AACCGCTGTTTCTGTTTCGGATTCGGATAAAGAGAAAGACGCCTTT 261
Query 546 TTTGTTGTTCGAAAGGGTGACATTGTTGGAATTTATAAGGATTTGATCGATTGTCAAGCT 605
|| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 262 TTCGTTGTTCGGAAGGGTGACATTATTGGAATTTATAAGGATTTGATTGATTGTCAAGCT 321
Query 606 CAAGTTGGATCTTCGGTTTATGATCCTCCAGTTAGCGTTTATAAG 650
||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 322 CAAGTTGGATCTTCGGTATATGATCTTCCAGTTAGCGTTTATAAG 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55726028435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5