BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51100.1
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949656 jgi|Araly1|949656|scaffold_801543.1 1445 0.0
> Ahg949656 jgi|Araly1|949656|scaffold_801543.1
Length=959
Score = 1445 bits (782), Expect = 0.0
Identities = 903/962 (94%), Gaps = 6/962 (1%)
Strand=Plus/Plus
Query 46 TCAGTAACGCTTTGAGTG-AAGATGATGAATGTTGCAGTGACAGCCACTCCCTCGTCTCT 104
|||||||||||||||| | ||||||| || ||||||||||||||| | | |||| |||||
Sbjct 1 TCAGTAACGCTTTGAG-GAAAGATGACGAGTGTTGCAGTGACAGCAATTTCCTCATCTCT 59
Query 105 CTTGTACTCTCCTCTGCTTCTTCCTTCTCAAGGGCCAAACCGGCGAATGCAATGGAAAAG 164
|| || |||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct 60 CTCGTGCTCTCCTCTGCTGCTTCCTTCTCAAGGGCCAAAACTGCGAATGCAATGGAAAAG 119
Query 165 AAACGGA-AAGAGACGGTTAGGGACAAAGGTGGCTGTTTCCGGTGTTATCACAGCTGGAT 223
|||| || ||||||| ||| || ||||||||||||||||||||| ||||| || || |
Sbjct 120 AAAC-GATAAGAGACAGTTCTCGAGAAAGGTGGCTGTTTCCGGTGTAATCACTGCGGGGT 178
Query 224 TTGAGCTGAAGCCACCTCCATATCCTCTTGATGCTCTGGAACCGCATATGAGCCGGGAAA 283
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TTGAGCTGAAGCCGCCTCCTTATCCTCTTGATGCTCTGGAACCGCATATGAGCCGGGAAA 238
Query 284 CCTTGGATTATCACTGGGGCAAACATCACAAAACTTATGTAGAGAACCTGAACAAGCAAA 343
|||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||
Sbjct 239 CCTTGGATTATCACTGGGGCAAACATCACAGAACTTACGTAGAGAATCTGAACAAGCAAA 298
Query 344 TCTTAGGCACGGATCTAGATGCATTATCCTTGGAAGAAGTTGTGCTTCTTTCATACAACA 403
|| ||||||| ||||||||| | | |||| ||||||||||||||||||||||||||||
Sbjct 299 TCGTAGGCACAGATCTAGATATACTGCCCTTAGAAGAAGTTGTGCTTCTTTCATACAACA 358
Query 404 AAGGCAATATGCTTCCTGCTTTCAACAACGCTGCACAGGCTTGGAACCACGAGTTCTTCT 463
|||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||
Sbjct 359 GAGGCAATATGCTTCCTGCCTTCAACAACGCAGCACAGGCTTGGAACCACGACTTCTTCT 418
Query 464 GGGAGTCTATCCAACCTGGAGGTGGAGGAAAGCCAACTGGAGAGCTCCTCAGATTAATAG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GGGAGTCTATCCAACCTGGAGGTGGAGGAAAGCCAACTGGAGAGCTCCTCAGATTAATAG 478
Query 524 AAAGAGATTTTGGGTCTTTCGAAGAGTTTTTGGAAAGGTTCAAGTCGGCTGCAGCTTCGA 583
| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 AGAGAGATTTCGGATCTTTCGAAGAGTTTTTGGAAAGGTTCAAGTCGGCTGCAGCTTCTA 538
Query 584 ATTTTGGTTCGGGTTGGACATGGCTTGCATATAAGGCGAATAGACTTGACGTTGCAAATG 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATTTTGGTTCGGGTTGGACATGGCTTGCATATAAGGCGAATAGACTTGACGTTGCAAATG 598
Query 644 CCGTTAATCCTCTCCCAAAGGAGGAAGACAAGAAACTTGTTATAGTGAAGACGCCCAATG 703
|||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 599 CCGTAAATCCACTCCCAAAGGAGGAAGACAAGAAGCTTGTAATAGTGAAGACGCCCAATG 658
Query 704 CAGTAAATCCGCTCGTATGGGATTATTCTCCACTTCTCACCATTGATACCTGGGAGCACG 763
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAGTAAATCCGCTTGTATGGGATTATTCTCCACTTCTCACCATTGATACCTGGGAGCACG 718
Query 764 CTTACTATCTGGATTTTGAGAACCGAAGAGCTGAATACATAAATACATTCATGGAAAAGC 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 CTTACTATCTGGATTTTGAGAACCGAAGAGCTGAATACATAAATACATTCATGGAAAGGC 778
Query 824 TTGTGTCATGGGAAACTGTAAGCACAAGGTTGGAATCCGCAATTGCTCGAGCAGTGCAaa 883
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 TTGTATCATGGGAAACTGTAAGCACAAGGTTGGAATCCGCAATGGCTCGAGCAGTGCAAA 838
Query 884 gagaacaagaaggaacagagacagaagatgaagagaatccagatgatgaagta-ccagag 942
||||||||||||||||||||||||| |||||||||||||||||||| |||| | ||||||
Sbjct 839 GAGAACAAGAAGGAACAGAGACAGAGGATGAAGAGAATCCAGATGACGAAG-AGCCAGAG 897
Query 943 GTCTATTTAGATAGTGACATCGATGTATCTGAGGTTGACTAAAACTTGTGAAGCAATAAC 1002
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 898 GTCTATTTAGATAGTGATATCGATGTATCTGAGGTTGACTAAAACTTGTGAAGTAATAAC 957
Query 1003 AT 1004
||
Sbjct 958 AT 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38885375340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5