BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G51105.1

Length=545
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916733 jgi|Araly1|916733|Al_scaffold_0008_1484                    303    6e-82


> Ahg916733 jgi|Araly1|916733|Al_scaffold_0008_1484
Length=414

 Score =  303 bits (164),  Expect = 6e-82
 Identities = 234/267 (88%), Gaps = 8/267 (3%)
 Strand=Plus/Plus

Query  156  TTCCAAATCCGTTCAAACCAAGTCCCGGTATGGCAGGAAGT-CCCGACTTGAGCAAATGT  214
            |||| || || ||| | ||||  ||||||||| |||||| | |||||| ||| |||||||
Sbjct  143  TTCCTAACCCTTTCCATCCAAACCCCGGTATGCCAGGAA-TGCCCGACATGACCAAATGT  201

Query  215  TGGTCAACAGTGATGGATTTGCCGGGATGCTTTGAAGAGATTCAACAAGCCGTAATGTCC  274
            ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct  202  TGGTCAACAGTGATGGATTTGCCAGGATGCTTTCAAGAGATTCAACAAGCCGTAATGACC  261

Query  275  GGCAAATTT-GAAGGCGTTGGTCCTGCTTGTTGTAAAGCTTTCCTTGACGCTGAAGCTAA  333
            ||||||||| | | || | ||||| |||||||||||||||||||||||||||||||||||
Sbjct  262  GGCAAATTTGGCA-GCATCGGTCCAGCTTGTTGTAAAGCTTTCCTTGACGCTGAAGCTAA  320

Query  334  CTGCTTACCAAATCTTCCATCCAACCCGTTTTTCCCTCCTATGATGAAACACCAATGCTC  393
            ||||  ||| |||||||||| |||||||||||||||||||||||| |||||  |||||||
Sbjct  321  CTGCACACCGAATCTTCCATTCAACCCGTTTTTCCCTCCTATGATTAAACAAAAATGCTC  380

Query  394  CAAAA-TGGCTAG-TCCTCCAACCACC  418
            ||||| || || | |||||| ||||||
Sbjct  381  CAAAAATG-CT-GCTCCTCCCACCACC  405


 Score =  156 bits (84),  Expect = 2e-37
 Identities = 123/141 (87%), Gaps = 6/141 (4%)
 Strand=Plus/Plus

Query  59   ATGTCGATCAAGAGTGTTGTTTCTCTCCTAGTAGTTGTATGCATCGCAGCCTCCGTTAAT  118
            |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||
Sbjct  1    ATGTCGATCAAGAGTGTTGTTTCTCTCCTAGTGGTCGTATGCATCGCAGCCTGCGTTAAT  60

Query  119  GCTCAGCTACCGCAGTTTCCCCCAATC--ATG----TTCCCGTTTCCAAATCCGTTCAAA  172
            || |||||||||||||| |||||| ||  ||     ||||||||||||||||| ||| | 
Sbjct  61   GCGCAGCTACCGCAGTTGCCCCCACTCCCATTCCCATTCCCGTTTCCAAATCCATTCCAG  120

Query  173  CCAAGTCCCGGTATGGCAGGA  193
            |||||||| |||||| |||||
Sbjct  121  CCAAGTCCTGGTATGCCAGGA  141



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19879061869


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5