BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51110.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495179 jgi|Araly1|495179|fgenesh2_kg.8__995__AT5G51110.1 1099 0.0
> Ahg495179 jgi|Araly1|495179|fgenesh2_kg.8__995__AT5G51110.1
Length=874
Score = 1099 bits (595), Expect = 0.0
Identities = 816/915 (89%), Gaps = 45/915 (5%)
Strand=Plus/Plus
Query 1 AACTC-AGTCCAGTGGTCTGAAAATCGTTTCGCTCTCTAAAAACCAAAACTCTTATCTTC 59
||||| || ||||||||||||||||||||||||||||| |||||||||| | | ||
Sbjct 1 AACTCAAG-CCAGTGGTCTGAAAATCGTTTCGCTCTCT-AAAACCAAAA-----A-C-TC 51
Query 60 GGTACAGAGCAAATCACAGCTCCCGATGGCCGCCACGTCATCATCACCGCCGTGTAACAT 119
| | | ||| ||||| | ||||||||||||||||||||||| ||||||||||| ||
Sbjct 52 --TTC--A--AAA-CACAGGTTCCGATGGCCGCCACGTCATCATCTCCGCCGTGTAATAT 104
Query 120 CTCCGCGTCCTCCCTCCTCCTCCGTCAACCTTCTCGCTCAATCCTTAAAGTGTTCGGTTT 179
||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 105 CTCCGTATCCTCCCTCCTCCTCCGTCAACCTTCTTGCACAATCCTTAAAGTGTTCGGTTT 164
Query 180 ATTACCACCTGTAAGTAGGAATAACCGTAAACTCGGCCGGTTAACGGTGACCCGGTCTAA 239
|||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 165 ATTACCACCTACGAGTAGGAATACCCGTAAACTAGGCCGGTTAACGGTGACCCGGTCTAA 224
Query 240 TCTGGCGCAGGATTTTCTTGGTGACTTCGGAGCTCGTGACCCTTACCCGGAGGAGATAGC 299
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 225 TCTGGCGCAGGATTTTCTCGGTGATTTCGGAGCTCGTGACCCTTACCCGGAGGAGATAGC 284
Query 300 GAGTCAATTCGGAGATAAAGTGTTGGGATGCCAAAGCACTGAGCACAAGATTTTGATACC 359
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 285 AAGTCAATTCGGAGATAAAGTGTTGGGTTGCCAAAGCACTGAGCACAAGATTTTGATACC 344
Query 360 AAACGCATCTGTTTTGTCTCTCTCCCAGCTTCAGTGTTCCCCTGTTTCGTCTTCACAGCC 419
|||||| ||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||
Sbjct 345 AAACGCTTCTGTTTTGTCTCTCTCTCAGCTTCAGTGCTCCCCTGTTTCGCCTTCACAACC 404
Query 420 TCCTTTGTCCGGC-GATGATGCCAGAACTCTCCTCCACAAGGTTTTGGGATGGAGTATAG 478
||||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 405 TCCTTTGTC-GGCTGATGATGCAAGAACACTCCTCCATAAGGTTTTGGGATGGAGTATAG 463
Query 479 TGGATAATGAAGCGGGTGGTCTGAAAATAAGGTGTATGTGGAAAGTGAGGGATTTTGGGT 538
|||| | ||||| || ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 464 TGGAGGACGAAGCTGGCGGTCTGAAAATAAGGTGTATGTGGAAAGTGAGGGATTCCGAGT 523
Query 539 GCGGTGTTGAACTCATAAACAGGATCCATAAGGTTGCTGAAGCTTCTGGTCATTACCCTT 598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 524 GCGGTGTTGAACTCATAAACAGGATCCAGAAGGTTGCTGAAGCTTCTGGTCATTACCCTT 583
Query 599 CTCTTCACT-TGGAAAGTCCTACCCAAGTTCGAGCTGAACTATTTACCTCTTCTATCGGA 657
||||||| | ||||||||||||| ||||||||||||||||||| ||| ||||||| |||
Sbjct 584 CTCTTCA-TGTGGAAAGTCCTACTCAAGTTCGAGCTGAACTATCCACCACTTCTATTGGA 642
Query 658 GGGTTGAGCATGAATGATTTCATAATGGCGGCTAAAATAGATGATATCAAGACTTCTGAT 717
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 643 GGGTTGAGCATGAATGATTTCATAATGGCGGCCAAAATAGATGATATCAAGACTTCTGAT 702
Query 718 CTTTCCCCTAGGAAAAGAGCTTGGGCGTGATCTTCTTTTCATTA-TTTTGGAACATTTTT 776
||||| |||||||||||||||||||| ||||||| ||| || || ||||| |||||||||
Sbjct 703 CTTTCACCTAGGAAAAGAGCTTGGGCATGATCTT-TTT-CACTACTTTTGTAACATTTTT 760
Query 777 GTTTGATAGTATGTAATGTATGTGATGTATTCTAAATTGTGTGTGATCGGTCTACATGTC 836
|||||||| ||| | |||| |||||| | |||| ||||||||||
Sbjct 761 GTTTGATAATAT--A-TGTA----ATGTAT--------G------ATCGATCTACATGTC 799
Query 837 GAGTTATATAGAAAGCATTGTCATAACCGCATAAGAGATATCACGCAACATGTCTTTGAG 896
|| |||||||||| ||||||||||| ||||||||||||||| ||| || ||||||||||
Sbjct 800 AAGCTATATAGAAAACATTGTCATAATCGCATAAGAGATATCGCGCTACTTGTCTTTGAG 859
Query 897 ATTCATTCATCAATC 911
|||||||||||||||
Sbjct 860 ATTCATTCATCAATC 874
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5