BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51120.2
Length=1213
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949658 jgi|Araly1|949658|scaffold_801545.1 686 0.0
> Ahg949658 jgi|Araly1|949658|scaffold_801545.1
Length=729
Score = 686 bits (371), Expect = 0.0
Identities = 415/436 (95%), Gaps = 4/436 (1%)
Strand=Plus/Plus
Query 482 GTGGTGTTAGTGCGGCTGAGAAGGAAGAAGTGGATTCGCGTTCAATATATGTTGGCAATG 541
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 297 GTGGTGTTAGTGCGGCTGAGAAGGAAGAAGTGGATTCGCGTTCAATATATGTCGGCAATG 356
Query 542 TGGACTATGCATGTACTCCAGAGGAAGTCCAGCAGCATTTTCAATCATGTGGGACAGTGA 601
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 357 TGGATTATGCATGTACTCCAGAGGAAGTCCAGCAGCATTTTCAATCCTGTGGGACAGTGA 416
Query 602 ATAGGGTTACAATTCTGACAGATAAGTTTGGTCAACCTAAAGGTTTTGCGTATGTCGAAT 661
|||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 417 ATAGGGTTACGATTTTGACAGATAAGTTTGGTCAACCTAAAGGTTTTGCCTATGTCGAAT 476
Query 662 TTGTGGAAGTAGAAGCTGTTCAGAATTCGCTTATTTTGAACGAGTCAGAACTACATGGTC 721
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 477 TTGTGGAAGTAGAAGCTGTTCAGAATTCTCTAATTTTGAACGAGTCAGAACTTCATGGTC 536
Query 722 GTCAGATAAAGGTATCTGCAAAGAGGACTAATGTACCTGGAATGAGGCAATTTCGAGGAA 781
||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| |
Sbjct 537 GTCAGATAAAGGTATCTGCAAAGAGAACTAATGTCCCCGGAATGAGGCAATTTCGAGG-A 595
Query 782 GAGGGCGTCCCTTTAGACCGATGAGGGGATTCATGCCAGGAGTTCCATTTTATCCTCCAT 841
| |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 596 -A-GGCGCCCCTTTAGACCAATGAGGGGATTCATGCCCGGAGTTCCATTTTATCCTCCAT 653
Query 842 ATGCTTATGGGAGAGTTCCCAGGTTCAGACGGCCTATGCGCTACAGACCGTACTGATTAG 901
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 654 ATGCTTATGGGAGAGTTCCCAGGTTCAGACGGCCGATGCGCTACAGACCGTACTGATTAG 713
Query 902 GCAAA-TTGGTGTTAA 916
||||| ||| ||||||
Sbjct 714 GCAAAATTGTTGTTAA 729
Score = 407 bits (220), Expect = 1e-112
Identities = 265/286 (93%), Gaps = 6/286 (2%)
Strand=Plus/Plus
Query 79 GAGAGATATAGAGAGAGAAAGATGCCGGTGCACGATGAGCAAGAGCATGAGGTGTACGGT 138
|||||| | |||||||| |||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2 GAGAGAGAGGGAGAGAGAGAGATGCCGGTGCGCGAGGAGCAAGAGCATGAGGTGTACGGT 61
Query 139 GGAGAGATC-C-CA-GAAGA-G--GAAGAAGGTGAGATGGATACGGAAGAGTACGAAGAA 192
||||||||| | | ||||| | |||||||| |||||||||||||| ||||||||||||
Sbjct 62 GGAGAGATCTCAGAGGAAGAGGAAGAAGAAGGAGAGATGGATACGGAGGAGTACGAAGAA 121
Query 193 CACGGCGGAGAAGAAGGTGCCGCCGCCGGAGATGAGGAGCTTGAACCTGGCTCTAGCTCT 252
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 CACGGCGGAGAAGAAGGCGCCGCCGCCGGAGATGAGGAGCTTGAACCTGGCTCTAGCTCT 181
Query 253 AGGGACTTGGAGGATATGAAGAAACGAATTAAGGAGATTGAGGAAGAAGCTGGAGCTTTG 312
| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 182 AAGGACTTAGAGGATATGAAGAAACGAATTAAGGAGATCGAGGAAGAAGCTGGAGCTTTG 241
Query 313 CGTGAAATGCAAGCCAAGGCTGAGAAAGATATGGGTGCTAGTCAAG 358
||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 242 CGTGAAATGCAAGCCAAAGCTGAGAAAGATATGGGTGCTGGTCAAG 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45290025396
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5