BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51130.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495181 jgi|Araly1|495181|fgenesh2_kg.8__997__AT5G51130.1 1762 0.0
> Ahg495181 jgi|Araly1|495181|fgenesh2_kg.8__997__AT5G51130.1
Length=1177
Score = 1762 bits (954), Expect = 0.0
Identities = 1116/1188 (94%), Gaps = 35/1188 (3%)
Strand=Plus/Plus
Query 26 CATAGAAGAAACCCTAACTTCGCGAGCTTTGTTCAT----CAAC-GCGTGTGAGaaaaaa 80
|||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||
Sbjct 19 CATAGAAGAAACCCTAACTTCGCGAGCTTTGTTCATCAACCAACGGCGTGTGAG-AAAAC 77
Query 81 aTGGGTCGGGACAACGATCagaagaagaataagaagaagagaaacagaagtaatgagaat 140
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 78 ATGGGTCGGGACAACGATCAGAAGAAGAATAAGAAGAAGAGAAACACAAGTAATGAGAAT 137
Query 141 gagaagagtgttgagaaagTAGTTGCTAATGAAGAGAAAGTCCCAACACAGCAGAAGCag 200
||||||||||||||||||||||| ||||||||||||||||||| | ||| | |||||
Sbjct 138 GAGAAGAGTGTTGAGAAAGTAGTCACTAATGAAGAGAAAGTCCC-A-ACA-C---AGCAG 191
Query 201 aagcaacaacaaggacaacaaggaaattgtaatcaaagcaagaagaagaagaatcaagaa 260
|||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 192 AAGCAACAACAA-G-------GG-AATTGTAATCAAAGCAAGAAGAAGAAGAATCAAGAA 242
Query 261 gTTTATCCCTTCGGAAATTACAGAAACTACTATGGCTACCGAATAAGCAATGACACGGAT 320
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 243 GTTTATCCATTCGGAAATTACAGAAACTACTATGGCTACCGAATAAGCCATGATACGGAT 302
Query 321 GAGGATCCTCGGCTTAAAGTGTTGAAGAAGGAATGGTTTGAAGGCAAAGACTGTCTTGAC 380
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 303 GAGGATCCTCGGCTTAAAGTCTTGAAGAAAGAATGGTTTGAAGGCAAAGACTGTCTTGAC 362
Query 381 ATTGGCTGCAACAGCGGCATCATGACTATTCATATTGCAAAAAAGTTCGGTTGCCGGAGC 440
||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||||||||
Sbjct 363 ATTGGTTGCAACAGCGGCATTATGACTATTCATATTGCTAAAAAGTTTGGTTGCCGGAGC 422
Query 441 ATTCTTGGAGTTGACATTGATACAAGTCGCATTGAGGATGCTCACTGGCATCTTAGGAAG 500
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 423 ATTCTTGGAGTTGACATTGATTCAAGTCGCATTGAGGATGCTCACTGGCATCTTAGGAAG 482
Query 501 TTTGTCAGAATGCAGAATTCTACTAAGCCTAGTGAAAAGAAATCTAGTTCTGAGGGTGCC 560
|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||
Sbjct 483 TTTGTCAGAATGCAGAATTCCGCTAAGCCTAGTGAACAGAAATCTAGTTCGGAGGGTGCC 542
Query 561 GATGGAGTACATGGATCGAAGGAGCCATCTGTTTCTCTCTCCAATGGCGAGGCAAAGGCA 620
|| ||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| ||
Sbjct 543 GAGGGAGTACATAGATCGAAGGAGCAATCTGCTTCTCTCTCCAATGGCGAGGCAAAGACA 602
Query 621 GATAGTGCAGAAACTAAAGACTTGTCTCAGATTGTGTCGTTTCAGAAAGAGAATTTTGTT 680
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 603 GATAGCGCAGAAACTAAAGACTTGTCTCAGATTGTGTCCTTTCAGAAAGAGAATTTTGTT 662
Query 681 CAAACCCGAAATCTTGACGACAATCGTTATGATACAAT-TCTATGTTTGAGTGTGACAAA 739
| |||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct 663 CTAACCCGAAATCTTGACGAGAATCGTTATGATACAATAT-TATGTTTGAGTGTGACAAA 721
Query 740 ATGGGTTCATTTGAACTGGGGTGATGATGGTTTAATCACCTTATTTTCAAAGATTTGGCG 799
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 722 ATGGGTTCATTTGAACTGGGGTGATGATGGTTTGATCACCTTATTTTCAAAAATTTGGCG 781
Query 800 TCTTCTTCAACCGGGTGGTATCTTTGTAATGGAACCTCAGCCTTGGAAATCTTATGAAAA 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 TCTTCTTCAACCGGGTGGTATCTTTGTAATGGAACCTCAGCCTTGGAAATCTTATGAAAA 841
Query 860 CAATCGTCGTGTCTCAGAGACAACTGCAATGAATTACCGAACGATTGTTTTACGACCAGA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CAATCGTCGTGTCTCAGAGACAACTGCAATGAATTACCGAACGATTGTTTTACGACCAGA 901
Query 920 CCGTTTCCAAGAAATTCTTCTTGATAAGATTGGGTTTAGAACAGTGGAAGATCTTACATC 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CCGTTTCCAAGAAATTCTTCTTGATAAGATTGGGTTTAGAACAGTGGAAGATCTTACATC 961
Query 980 AAGCTTGTCCGGTGCAAGCAAAGGGTTTGATAGACAGATTCTTGCGTTCCAGAAATGAAC 1039
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AAGCTTGTCTGGTGCAAGCAAAGGGTTTGATAGACAGATTCTTGCGTTCCAGAAATGAAC 1021
Query 1040 ATAACAAACCAGATGCCTCATTGAAGAAGAAGGACAAGTTGTTGAGTTTTTGAATAGCCT 1099
|||| || |||||||||||||||||| || |||||||||||||||||||| | |
Sbjct 1022 ATAATAA-CCAGATGCCTCATTGAAG--GA----CAAGTTGTTGAGTTTTTGAA---C-T 1070
Query 1100 TGTGAAAATCAAATTATGACATGGTTGAACACAAGATATAAAAGGCAACTAAAAGTCGCT 1159
|||||||||||||||||||||||||||||||||||| |||| || |||||| ||||||||
Sbjct 1071 TGTGAAAATCAAATTATGACATGGTTGAACACAAGACATAAGAG-CAACTACAAGTCGCT 1129
Query 1160 TCATATCTAATATGTAATCTTTTTGCTACAGCTTAGGCTCACTAATCT 1207
|||||||||||| ||| ||||||||||||||||||||||| |||||||
Sbjct 1130 TCATATCTAATACGTACTCTTTTTGCTACAGCTTAGGCTCTCTAATCT 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5