BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51140.2
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949660 jgi|Araly1|949660|scaffold_801547.1 1840 0.0
> Ahg949660 jgi|Araly1|949660|scaffold_801547.1
Length=1223
Score = 1840 bits (996), Expect = 0.0
Identities = 1121/1180 (95%), Gaps = 13/1180 (1%)
Strand=Plus/Plus
Query 7 AAGA-TTAATC-TAAAAACATGAAACGAAAGCAGCAAGAAGACGACAACGACGACGGCGT 64
|||| |||||| ||||||||||||||||||||||| | | | || |||||||||||
Sbjct 4 AAGATTTAATCTTAAAAACATGAAACGAAAGCAGC----A-A-G--AA-GACGACGGCGT 54
Query 65 AGAGAAAGCCGTCTCTCCCGTCCTCGCCACTACCTCAAACACCATGAGTACTGATCTACT 124
||||||||||| |||||||||| ||||||| ||| |||||||||||| |||||| |||||
Sbjct 55 AGAGAAAGCCGCCTCTCCCGTCGTCGCCACCACCCCAAACACCATGAATACTGACCTACT 114
Query 125 TTTACAGTCATCTTCTAAACTATCACAGAAACAGGACTACATCTTCCATGGAGGAAGACG 184
| |||||||| |||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 115 TCTACAGTCACCTTCCAAACTATCGCAGAAGCAGGACTACATCTTCCATGGAGGAAGACG 174
Query 185 CCATGTGAGACCTTACTACTTCGAGTTCATTTCTCATGTGAACAAACGATGGACTGGGAA 244
||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 175 CCATGTGAGGCCGTACTACTTCGAGTTCATTTCTCATGTGAACAAACGCTGGACAGGGAA 234
Query 245 AACAATTGTGGATTTGTTTGCTGATGAATTTAAAGGACGGCCTCGTGATTATTATGTTGG 304
||||||||| |||||||| || || ||||||||||||||||||||||| |||||||||||
Sbjct 235 AACAATTGTCGATTTGTTCGCCGACGAATTTAAAGGACGGCCTCGTGAATATTATGTTGG 294
Query 305 TGCAGTCAAATCTGGAAGAATCAAAGTTGATGGAGAAATTGTACCGGTTTCATACATTGT 364
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 295 TGCAGTCAAATCTGGAAGAATCAAAGTTGATGGAGAAATTGTACCAGTTTCATACGTTGT 354
Query 365 GAAATCATCCCAAAAGATTACTCACTTCCTCCACAGGCATGAACCACCGGTGATGATTGA 424
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GAAATCATCTCAGAAGATTACTCACTTCCTCCACAGGCATGAACCACCGGTGATGATTGA 414
Query 425 TGATGTTGTGATCCTTCATCAAGAACCTGACGTTGTTACTGTCTGCAAACCAGCTTCTGT 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGATGTAGTGATCCTTCATCAAGAACCTGACGTTGTTACTGTCTGCAAACCAGCTTCTGT 474
Query 485 TCCTGTGCATCCATGTGGTCAATACCGTAAGAACACGA-TTGTTGGCATCCTTGATGCTG 543
|||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 475 TCCTGTGCATCCATGTGGTCAATATCGTAAGAACAC-AGTTGTTGGCATCCTTGATGCTG 533
Query 544 AGCATGACCTAGGAACTCTATTTCCTATTCACAGATTAGACCGTTTGGTTTCTGGATTGC 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGCATGACCTAGGAACTCTATTTCCTATTCACAGATTAGACCGTTTGGTTTCTGGATTGC 593
Query 604 TTATCATAGCAAGAACTGCGGCAAAAGCTGATTTTTTCAGGCAACAGATTGAGGGTGGAA 663
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 594 TCATCATAGCAAGAACTGCAACAAAAGCTGATTTTTTCAGGCAACAGATTGAGGGTGGAA 653
Query 664 TGGTGAAGAAACGTTATATTGCAAAGGTTATTGGCGTGTTCCCAGAAGATGAGATGATAG 723
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 654 TGGTGAAGAAACGTTATATTGCAAAGGTTATTGGTGTGTTCCCAGAAGATGAGATGATAG 713
Query 724 TCGACGCCAACATAAATTATAATGGCAGCGAAGGAAGAAGTACAGCAGAGGACGCCAATT 783
| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 714 TTGACGCCAACATAAATTATAATGGCAGCGAAGGAAGAAGTACAGCAGAGGACCCCGATT 773
Query 784 CAAGTGGTGACGATAAGAAGGTGAAGGGGAAGCCTGCATGCACGAAGTTCACTAGAATCG 843
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 774 CAAGTGGTGATGATAAGAAGGTGAAGGGGAAGCCTGCATGTACCAAGTTCACTAGAATCG 833
Query 844 ATACAAATGGGACTCATAGCCTCGTCTCATGTGAACCAGTGACAGGGCGAACCCATCAAA 903
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 834 ATACAAATGGGACTCATAGCCTCGTCTCATGTGAACCAGTGACTGGGCGAACCCATCAAA 893
Query 904 TACGAGTGCATCTACAATATACAGGGCATCCCATAGCGAATGACCCTCTTTATCTCAATC 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TACGAGTGCATCTACAATATACAGGGCATCCCATAGCGAATGACCCTCTTTATCTCAATC 953
Query 964 AACACATAGATAATCTTGAGACCTACATTGCAAAAAGAATCGATGCGGGTGAGAGAAAGA 1023
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 954 AACACATAGATAATCTTGAGACCTATATTGCAAAAAGAATCGATGCAGGTGAGAGAAAGA 1013
Query 1024 TTGTCTCCCCAGATGACTACGTGTATTCAAGCGAAGATTTCAGCATCGATCCAATGTGTA 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TTGTCTCCCCAGATGACTACGTGTATTCAAGCGAAGATTTCAGCATCGATCCAATGTGTA 1073
Query 1084 CGAACTGCCCAAAGTTGATCCCACAAGGATATGAGGAGCATGACGAGGCTCTCTGGTTAC 1143
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1074 CAAACTGCCCGAAGTTGATCCCACAAGGATATGAGGAGCACGACGAGGCTCTCTGGTTAC 1133
Query 1144 ATTGCGTTCAATACTGTGGAACTGGATGGGAATACGAATG 1183
| ||||||||||| | |||||||||||||| |||||||||
Sbjct 1134 ACTGCGTTCAATATTCTGGAACTGGATGGGTATACGAATG 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47729892084
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5