BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51150.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949661 jgi|Araly1|949661|scaffold_801548.1 2660 0.0
> Ahg949661 jgi|Araly1|949661|scaffold_801548.1
Length=1637
Score = 2660 bits (1440), Expect = 0.0
Identities = 1575/1641 (96%), Gaps = 6/1641 (0%)
Strand=Plus/Plus
Query 33 AATTCCTTTTAATTGACGATGCCTTCTTCGTTCTCCAAGCCGGATTTAGATCCTTCTTCT 92
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3 AATTCCTTTTAATTCACGATGCCTTCTTCGTTCTCCAAGCCGGCTTTAGATCCTTCTTCA 62
Query 93 TCGCCTCCACCGATTTCTCCTTTATCTCAAGACAGCTCGGAGGCTGAGCGCCGGCTTCGA 152
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TCGCCTCCACCGATTTCTCCTTTATCTCAAGACAGCTCGGAGGCTGAGCGCCGGCTTCGG 122
Query 153 GAAGCGGAGGAGAGGCTACGCGATGCCATGGCGGAGCTTCAGCGTAGACAACGCTCTGCG 212
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||
Sbjct 123 GAAGCGGAGGAGAGGCTACGCGATGCTATGGCGGAGCTTCAACGTAGACAACGCTCCGCG 182
Query 213 GCGCGTGGATCTCACGCGGAATTGTGTGATCACGCTGACGTTTCTTGCGTCGCCAATGCC 272
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GCGCGTGGATCTCACGCCGAATTGTGTGATCACGCTGACGTTTCTTGCGTCGCCAATGCC 242
Query 273 ATTGGGAATTTATGTCAGAGCTTTCTTCTCTCTTATGGTGTTAGAGTTGGGATCGGGATT 332
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 ATCGGGAATTTATGTCAGAGCTTTCTTCTCTCTTATGGTGTTAGAGTTGGGATCGGGATT 302
Query 333 CTTCTTCGCGCTTTTAAGCTCGCTAGGGGACAGTCTTATTCGTCTCTTCTCGATCTTAAG 392
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 303 CTTCTTCGCGCTTTTAAGCTCGCTAGGGGACAGTCTTATTCGTCTCTTCTCGATCTGAAG 362
Query 393 CAACTTGTTTCAGAGAAAGATTTGATAGTTAGGGAGGAAGCATGTCGTATTGGTCTACTT 452
|||||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 363 CAACTTGTCTCGGAGAAAGATTTGATAGTTAGGGAAGAAGCATGTCGTATTGGCCTACTA 422
Query 453 TTTGGTGGCTTTACTGGCTCGTATCATGCCCTTAGATGCTGTTTGAGGAAGTGGAGAAAG 512
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 423 TTTGGTGGCTTTACAGGCTCGTATCATGCCCTTAGATGCTGCTTGAGGAAGTGGAGGAAG 482
Query 513 AAAGAGACGCCATTGAATTCAGTCTTAGCAGGTTCAGTTGCGGGTTTGTCTATCTTGGCT 572
|| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 483 AAGGAAACGCCATTGAATTCAGTCTTAGCAGGTTCAGTTGCGGGTTTGTCTATCATGGCT 542
Query 573 TTAGATGATTCCAACCAGCGTCGCACACTTGCTCTATACCTCTTGGCTAGATTAGGCCAG 632
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 543 TTAGATGATTCCAACCAGCGGCGCACACTTGCTCTATACCTCTTGGCTAGATTAGGCCAG 602
Query 633 GCGGCTTATAATTCCGCTAAGTCAAAGAACAAGTTCCATCTTTGGGGTAGCCATTGGAGA 692
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 GCGGCTTATAATTCCGCAAAGTCAAAGAACAAGTTCCATCTTTGGGGTAGCCATTGGAGA 662
Query 693 CATGGAGATTCGTTACTTTTTTCTCTTGCATGTGCTCAGGTTATGTATTCCTTTATAATG 752
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CATGGAGATTCATTACTTTTTTCTCTTGCATGTGCTCAGGTTATGTATTCCTTTATAATG 722
Query 753 CGTCCTGAAACCTTGCCAAAATCATATAGAGAATTTATTCAGAAGACTGGTCCAGTTGCA 812
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 723 CGTCCTGAAACCTTGCCAAAATCATATAGAGAATTTATTCAGAAAACTGGTCCTGTTGCA 782
Query 813 AGGCCTGTCTACCAAGCTGTAAGAGAGTGCTGCAGAGGTGGTCCAATTGATGTAGCCTCC 872
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 783 AGGCCTGTCTACCAGGCTGTAAGAGAATGCTGCAGAGGTGGTCCAATTGATGTAGCCTCC 842
Query 873 TTGTCAGCCTATATTTCTAGTAAAAACGAAGCAAGCGACGTGAAGGTGGAAGAGTTTGCT 932
|| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 843 TTATCAGCCTATATTTCTAGTAAAAACGAAGCTAGTGACGTGAAGGTGGAAGAGTTTGCT 902
Query 933 TCCATCATTCCCTGTGCAGCTATTCATCCAAACACTAACTCGTGTCTGGCCCAAAATGCT 992
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TCCATCATTCCTTGTTCAGCTATTCATCCAAACACTAACTCGTGTCTGGCCCAAAATGCT 962
Query 993 AATGCAATGTCAGCTACATTCAAGAAAACATTTCCATTATATTTCTCCCTGACTTTTGTC 1052
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 963 AACGCAATGTCAGCTACATTCAAGAAAACATTTCCATTATATTTCTCCCTGACATTTGTC 1022
Query 1053 CCATATGTTGTTCTACACCTACAAAAATTCATGGCTTCTCCTTACCGGACATCTTGGCTT 1112
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1023 CCATATGTTGTTCTACACCTACAAAAGTTCATGGCTTCTCCTTACCGGACATCTTGGCTT 1082
Query 1113 GCAATCAGAGATTCAGTTAGATCGACGTCCTTCTTGTCTGCTTTTGTTGGGATTTTTCAG 1172
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GCAATCAGAGATTCTGTTAGATCGACGTCCTTCTTGTCTGCTTTTGTTGGGATTTTTCAG 1142
Query 1173 GCTTTCATATGTGCCCATAGAAAAGTTGCAACCAAAGACCACAAGCTCGTTTATTGGTTT 1232
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1143 GCTTTCATATGTGCCCATAGAAAAGTTGCAACCAAGGACCACAAGCTCGTTTATTGGTTT 1202
Query 1233 GCGGGTGGTGCAGCAGCCCTCTCAGTTATGCTGGAGAAGAAACCGAGACGCTCTGAGCTT 1292
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1203 GCGGGTGGTGTAGCAGCCCTCTCAGTTATGCTGGAGAAAAAACCGAGACGATCTGAGCTT 1262
Query 1293 GCTCTATATGTTCTTCCCCGAGCAGGAGATTCTCTGTGGGAGATACTTGTTAATCGCCAC 1352
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1263 GCTCTATATGTTCTTCCTCGAGCAGGAGATTCTCTGTGGGAGATACTTATTAATCGCCAC 1322
Query 1353 CTTCTTCCCGACATTAAAAATGCTGAGGTGGCTTTATTCTGTGGATGCATGGGAGGAATA 1412
||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 1323 CTTCTTCCCGATATTAAAAATGCTGAGGTTGCTTTATTTTGTGGATGTATGGGAGGAATC 1382
Query 1413 ATGTACTACCTCGAATATGAACCTGATACAATGGCTCCGTTTCTGAGGGGACTCATCCGT 1472
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1383 ATGTACTACCTAGAATATGAACCTGATACGATGGCTCCATTTCTGAGGGGACTCATCCGT 1442
Query 1473 CGGTTTCTTGCTAGCCAAATAAGCAATCCTAGCAGCAAATACCCTCATAGTTCGTCCTAT 1532
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1443 CGGTTTCTTGCTAGTCAAATAAGCAATCCTAGCAGCAAATACCCTCATAATTCTTCCTAT 1502
Query 1533 TCTTATCTCCAGACCCTAGATGCATTGAAGAAACCGAAAACGCAGGAGAGCCGAGAAGGC 1592
| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1503 ACATATCTCCAGACTCTAGATGCATTGAAGAAACCAAAAACGCAGGAGAGCCGAGAAGGC 1562
Query 1593 GAAACTCCGAAAGCCGAAGAAAAGTATAACTTGGAAGCAATTCCCGGTCTTTAGAAGTAT 1652
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1563 GAAACTCCGAAAGCAGAAGAAAAGTATAACTTGGAAGCAATTCCTGGTCTTTAGAAG--- 1619
Query 1653 AAGCAGAAGCTGTCTGATACT 1673
||||||||||||||||||
Sbjct 1620 ---CAGAAGCTGTCTGATACT 1637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5