BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51170.1
Length=1039
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495185 jgi|Araly1|495185|fgenesh2_kg.8__1001__AT5G51170.1 1297 0.0
> Ahg495185 jgi|Araly1|495185|fgenesh2_kg.8__1001__AT5G51170.1
Length=887
Score = 1297 bits (702), Expect = 0.0
Identities = 816/871 (94%), Gaps = 8/871 (1%)
Strand=Plus/Plus
Query 162 AGAGAAAGATTCGATTTCCTTGCCTCCTCCACCGCTTGCGCTTCTCGATTCCATTGTATC 221
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 24 AGAGAAGGATTCGATTTCCTTGCCTCCTCCGCCGCTTGCGCTTCTCGATTCCATTGTATC 83
Query 222 CACAGGTTCACTGGATTTCTTCTCAACAGAGCCTGGAGTTCGTGTAAGAAACTTTCCTCA 281
||||||||| || || | || | ||||||||||||||||||||||| ||||| |||||
Sbjct 84 CACAGGTTCGCTTGA---C-TC-C-ACAGAGCCTGGAGTTCGTGTAAGGAACTTCCCTCA 137
Query 282 TGTCGATGGAAATTACGCTTTGCACGTTTACGTACCTGTTTGTATACCTCCACTGCCAAA 341
||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||| ||
Sbjct 138 CGTCGATGGAAATTACGCCTTGCACGTTTACATACCTGTTTCTATACCTCCATTGCCGAA 197
Query 342 GAAGGAGATTGTATGTTTTTTAAAGAAGGTTGCATCAGTTGTTCCTCATCTTCATTTGGT 401
|||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 198 GAAGGAGATTGTTTGTTTCTTAAAGAGGGTTGCATCAGTTGTTCCTCATCTTCATTTGGT 257
Query 402 AGAGGCTGATGTGCCACTCAGCATTCTATGCAAGGATGATCAGAAGTTTGAGCGTGCCTT 461
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 258 GGAGGCTGATGTGCCACTCAGCATTCTATGCAAGGATGATCAGAAGTTTGAGCGTGCATT 317
Query 462 GGGGAGAGAGTTCCACATAAGCTTAGGAAGAAACGTTCCACTACGTGTTCATCAGATTAA 521
|||||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||
Sbjct 318 GGGGAGAGAGTTCCACATTAGCTTAGGAAGAAGCGTGCCTCTGCGTGTTCATCAGATTAA 377
Query 522 CTCGGTGATTTCTATGCTTCGGCAAAAGCTTCAGTTGCAGAAGAGATACTT-GATAGATT 580
||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 378 CTCGGTGGTTTCTATGCTTCGGCAAAAGCTTCAGTTGCAGAAGAGATA-TTCAATCGATT 436
Query 581 TCAATAAGTGGGAAGTCTTTGTGAATGATGACCATACTCGCTCTTTCCTTTCTTTGGAAA 640
| ||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||
Sbjct 437 TTAATAAGTGGCAAGTCTTTGTGAATGACGACTGTACTCGCTCTTTCCTTTCATTGGAAA 496
Query 641 TCACTACTTCAGGACTATCCGAGATAAGTAAGCAAATTGATGCTGTTAATGAAGTTTACA 700
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 497 TCACCACTTCAGGACTATCCGAGATAAGTAAGCAAATTGATGCTGTTAATGAAGTATACA 556
Query 701 AGCTCCACAATCTGCCGGAGTTCTACAAGGATCCGCGGCCGCATATATCCTTGGTCTGGG 760
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 AGCTTCACAATCTGCCAGAGTTCTACAAGGATCCGCGGCCGCATATATCCTTGGTCTGGG 616
Query 761 CGTTGGGTGATATTAGAACTTCCCTAAAGGGAGCTGTTGACGTGGAACTTAGGAAGCTTA 820
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 617 CGTTGGGTGATATTAGAACTTCCCTAAAGGGAGCTGTTGACGGGGAACTGAGGAAGCTTA 676
Query 821 GAGCAGGTGGTTGTGTGCAGAATCGTATCTTCACCTCTAAGTTTTGTGGGATCGAGTGTA 880
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 677 GAGCTGGTGGTTGTGTGCAGAATCGTATCTTCATCTCTAAGTTTGGTGGGATCGAGTGTA 736
Query 881 AGATAGGAAACAAAACACACAAAATATGTAAACTCCCAGATGAATAAGAAAATCTCAAAT 940
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 737 AGATAGGAAACAAAACACACAAAATATGTAAACTCCAAGATGAATAAGAAAATCCCAAAT 796
Query 941 TTCTGTGTTTGCAGACCAATCAGGTATGCATTTGTAACGACATAGAAGGATGAGTTGATC 1000
|||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 797 TTCTGTGTTTGCTGACCTATCAGGTATGCATTTGTAACGACATAGAAGCATGAGTTGATC 856
Query 1001 TGTGTTCTTGGGTATTCCATAATATATGTCT 1031
||||||||||||||||||| | |||||||||
Sbjct 857 TGTGTTCTTGGGTATTCCACATTATATGTCT 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38656637838
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5