BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51180.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495187 jgi|Araly1|495187|fgenesh2_kg.8__1003__AT5G51180.1 2156 0.0
> Ahg495187 jgi|Araly1|495187|fgenesh2_kg.8__1003__AT5G51180.1
Length=1554
Score = 2156 bits (1167), Expect = 0.0
Identities = 1351/1437 (94%), Gaps = 24/1437 (2%)
Strand=Plus/Plus
Query 249 TTTCAAATTGGGTGGTTGGAAGCAGTGTTTG-TGCTGTAATTGGATCTGATCTGATCGGA 307
|||||||||||||| || | ||||| | ||| ||||||||||| |||||||| ||||| |
Sbjct 131 TTTCAAATTGGGTGTTTAG-AGCAGCG-TTGCTGCTGTAATTGAATCTGATCCGATCGAA 188
Query 308 TTCGATTGAAATTTGGATCCCATGGAGAAGCACGAGGAGGAAAACGGTCTTTGCAAGGCG 367
|||||||| |||||||||||||| | | || ||||| | |||||| |||||||||||
Sbjct 189 TTCGATTGTAATTTGGATCCCAT-G-G-AG---GAGGA-G--AACGGTGTTTGCAAGGCG 239
Query 368 GAATCTGTTGATGGTAGCCTTGATGTTTGGAGTTGTCAGAATTCTGATTCTTCTTCCGCT 427
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 GAATCTGTCGATGGGAGCCTTGATGTTTGGAGTTGTCAGAATTCCGATTCTTCTTCCGCT 299
Query 428 GATCACCTTGTCGTTATGGTCCATGGGATCTTGGGAAGTACGGATGATTGGAAGTTTGGA 487
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 300 GATCACCTTGTCGTTATGGTCCATGGGATTTTAGGAAGTACGGATGATTGGAAGTTTGGA 359
Query 488 GCTGAGCAGTTCGTCAAAAAGATGCCAGACAAAGTCTTTGTTCACTGTAGTGAAAAGAAT 547
|||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 360 GCTGAGCAATTCGTCAAAAAGCTGCCTGACAAAGTCTTTGTTCACTGTAGTGAAAAGAAT 419
Query 548 GTGTCTGCGCTTACTCTAGATGGTGTGGATGTAATGGGTGAACGTCTAGCAGCTGAGGTT 607
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 420 GTGTCTGCGCTTACTCTAGATGGTGTCGATGTAATGGGTGAGCGTCTAGCAGCTGAGGTT 479
Query 608 CTTGATATTATTCAGAGAAAACCAAATA-TCTGTAAAATCTCCTTTGTTGCACATTCTTT 666
|||||||||||||| |||||||| |||| || | ||||||||||||||||||||||||||
Sbjct 480 CTTGATATTATTCAAAGAAAACCGAATATTC-GGAAAATCTCCTTTGTTGCACATTCTTT 538
Query 667 GGGAGGGCTTGCAGCAAGATATGCAATTGGGAAATTGTACAAGCCCGCTAATCAGGAAGA 726
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 539 GGGGGGGCTTGCGGCAAGATATGCAATTGGGAAATTGTACAAGCCTGCTAATCAGAAAGA 598
Query 727 TGTTAAAGACTCGGTAGCGGACAGTAGTCAAGAGACTCCCAAAGGCACAATATGTGGACT 786
||| ||||||||| |||| || |||||| ||| | ||||||||||||| |||||||||||
Sbjct 599 TGTGAAAGACTCGTTAGCCGATAGTAGTGAAGGGCCTCCCAAAGGCACGATATGTGGACT 658
Query 787 CGAGGCTATGAATTTTATTACTGTAGCTACACCACATTTGGGTTCAATGGGTAATAAACA 846
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGAGGCTATGAACTTTATTACTGTAGCTACACCACATTTGGGTTCAATGGGTAATAAACA 718
Query 847 GGTTCCGTTTCTCTTTGGTTTTTCTTCCATTGAGAAAGTTGCAGGTCTCATTATCCACTG 906
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGTACCGTTTCTCTTTGGCTTTTCTTCCATTGAGAAAGTTGCAGGTCTCATTATCCACTG 778
Query 907 GATATTTAAAAGAACGGGCCGTCACCTTTTCTTGAAGGATGAAGAAGAGGGAAAACCACC 966
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 779 GATATTTAAAAGAACCGGCCGTCACCTTTTCTTGAAAGATGAAGAAGAGGGAAAACCACC 838
Query 967 ATTGCTTCGACGCATGGTGGAAGATACCGATGATTGTCATTTCATATCTGCACTGCGAGC 1026
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 839 CTTGCTTCGACGCATGGTGGAAGATACTGATGATTGTCATTTCATATCTGCACTGCGAGC 898
Query 1027 CTTCAAAAGGCGGGTGGCTTATTCAAATGTGGGCCATGATCACGTTGTTGGCTGGAAGAC 1086
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 899 CTTCAAAAGGCGGGTGGCTTATTCAAATGTGGGCCACGATCACGTTGTTGGCTGGAAGAC 958
Query 1087 GGCATCCATTAGACGTGACAGTGAATTGCCTAAGTGGGAAGATTCTCTGAATGAGAAGTA 1146
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGCATCTATCAGACGTGACAGTGAATTGCCTAAGTGGGAAGATTCTCTGAATGAGAAGTA 1018
Query 1147 TCCTCATATTGTTTACGAAGAACTCTGCAAGGCATGTGAT-ATGGAGGACATACCAGAAG 1205
|||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1019 TCCTCACATTGTTTACGAAGAACTCTGCAAGGCATGTGATGCT-GAGGACATACCAGAAG 1077
Query 1206 GCGAGAATCATTCAGACGACATAGAAGAAGAAATGATCAAAGGCCTCTCCTCTGTCTCAT 1265
|||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1078 GCGAGAATCATTCAGATGACATAGAAGAAGAAATGATCAAAGGCCTCTCCACAGTCTCAT 1137
Query 1266 GGGAAAAAGTTGATGTTAGCTTTCACAGTAGCAGGCAGAGGTTTGCTGCCCATAGTGTTA 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GGGAAAAAGTTGATGTTAGCTTTCACAGTAGCAGGCAGAGGTTTGCTGCCCATAGTGTTA 1197
Query 1326 TACAGGTTAAAAATGAAGATATGCATATAGAAGGAGCAGATGTCATAGAGCATATCATCG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1198 TACAGGTTAAAAATGAAGATATGCATATAGAAGGAGCAGATGTCATAGAGCATATTATCG 1257
Query 1386 ATCATTTCCATGCTTAAATCAGTAAACTTTTCATCACCCAAGAGTTTGGGACACGACA-T 1444
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 1258 ATCATTTCCATGCTTAAATCAGTAAACTTTTCATCACCCAAGAGTCTGGGACACGATAAT 1317
Query 1445 TAAGGACTCAAATTTCTTATAGTAGAGCAACAATTTTCCAGCTGGACGTTTATATGTCAC 1504
||| ||||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||
Sbjct 1318 TAAAGACTCAAGTTTCTTATAGTAAAGCAACA-TTTTCCA-CTGGACGTTTATATGTCAC 1375
Query 1505 GTAGTTGTTTACACTATAAAATCATCTCATTTTGTCTGTAATTGCACAGGTAGCAAGACG 1564
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
Sbjct 1376 GTAGTTGTTTACACTATAAAATCAGCTCATTTTCTCTGTAATTGCACAGGTAGCAAGATG 1435
Query 1565 TCAATTATGACCAATGTATTTGATACATGGTATTAGCA--AA-GCAAAT-T-GTTCAATT 1619
|| ||||||||||||||||||||||| ||||||||||| || |||||| | ||||||||
Sbjct 1436 TCGATTATGACCAATGTATTTGATACTTGGTATTAGCAGCAAAGCAAATCTTGTTCAATT 1495
Query 1620 CAATTGTATCATGTATTCACAAATATTTTGCAATGGAAGCTTTGTGCCTATATAttt 1676
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1496 CAATTGTATCATGTATTCACATATATTTTGCAATGAAAGCTTTGTGCCTATATATTT 1552
Score = 124 bits (67), Expect = 2e-27
Identities = 81/87 (93%), Gaps = 4/87 (5%)
Strand=Plus/Plus
Query 116 GTGTTT-TCTTCCTTCCGTTTCCTTCTCTGGCAAGTCTGCTTCGTACGTACTCTCTCTTC 174
|||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 50 GTGTTTGT-TTCCTTCCGTTTCCTTCTCTGGCAAGTCTGCTTCGTACGT--GCTCTCTTC 106
Query 175 ATTCCCACTTCACACTTTCTACTTTTT 201
||| |||||||||||||||||||||||
Sbjct 107 ATTTCCACTTCACACTTTCTACTTTTT 133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5