BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51190.1
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495189 jgi|Araly1|495189|fgenesh2_kg.8__1005__AT5G51190.1 1042 0.0
> Ahg495189 jgi|Araly1|495189|fgenesh2_kg.8__1005__AT5G51190.1
Length=800
Score = 1042 bits (564), Expect = 0.0
Identities = 724/802 (90%), Gaps = 8/802 (1%)
Strand=Plus/Plus
Query 38 TCATCTATGGCTTCTTCACATCAACAACAGCAAGAACAAGACCAGTCAGCTTTAGATCTC 97
|||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||
Sbjct 1 TCATCTATGGCTTCTTCAAATCAACAACAACAAGAACAAGACCAATCAGCTTTAGATCTC 60
Query 98 ATAACCCAACACCTTCTTACTGATTTCCCTTCCTTAGACACCTTTGCCTCCACCATCCAC 157
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 61 ATAACCCAACACCTTCTTACCGATTTCCCTTCCTTAGACACCTTTGTCTCCACCATCCAC 120
Query 158 CACTGCACCACCTCAACTCTAAGCCAACGCAAACCACCTCTTGCCACTATAGCAGTTCCT 217
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 CACTGCACCACCTCAACTCTAAGCCAACGGAAGCCACCTCTTGCCACTATAGCAGTTCCT 180
Query 218 ACTACTGCACCGGTGGTTCAAGAGAATGATCAAAGGCATTACAGAGGCGTCAGGAGAAGA 277
||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| |||||
Sbjct 181 ACTACTGCACCAGTGGTTCAAGAGGATGATCAAAGGCATTACAGAGGCGTGAGGCGAAGA 240
Query 278 CCATGGGGTAAGTATGCGGCTGAGATCAGAGACCCAAACAAGAAAGGTGTTCGTGTCTGG 337
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCGTGGGGCAAGTATGCGGCTGAGATCAGAGACCCAAACAAGAAAGGTGTTCGTGTCTGG 300
Query 338 TTAGGCACTTTTGACACAGCCATGGAAGCTGCAAGAGGTTATGACAAGGCAGCTTTTAAA 397
||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 301 TTAGGGACTTTTGACACAGCCATGGAAGCTGCAAGGGGTTACGACAAGGCTGCTTTTAAA 360
Query 398 CTACGAGGAAGCAAAGCTATTCTTAACTTCCCACTTGAAGCAGGAAAGCATGAGGACTTG 457
||||| ||||||||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 361 CTACGTGGAAGCAAAGCCATTCTTAACTTTCCACTTGAAGCAGGCAAGCACGAGGACTTA 420
Query 458 GGAGACAACAAGAAGACTATTTCTTTAAAAGCAAAGAGGAAGAGACAGGTGACGGAGGAT 517
|||||||| || |||||| | ||||| |||||||||||||| ||||| || |||||||||
Sbjct 421 GGAGACAATAACAAGACTGTGTCTTTGAAAGCAAAGAGGAAAAGACAAGTAACGGAGGAT 480
Query 518 GAAAGCCAGCTGATCAGCCGTAAAGCTGTTAAGAGGGAAGAAGCTCAGGTTCAGGCTGAT 577
| |||||| || | |||| ||||||||| |||||||||||| |||||| |||||||||
Sbjct 481 GTAAGCCACCTAAGCAGCAATAAAGCTGTGAAGAGGGAAGAAACTCAGGCTCAGGCTGAG 540
Query 578 GCTTGTCCATTAACGCCATCAAGTTGGAAGGGGTTTTGGGACGGAGCAGACAGTAAAGAC 637
| ||| || ||||| || |||||||||| ||||||||||||||||| ||||||||||||
Sbjct 541 GTTTGCCCGTTAACACCGTCAAGTTGGATGGGGTTTTGGGACGGAGAAGACAGTAAAGAG 600
Query 638 ATGGGAATATTTTCCGTGCCTCTGTTATCTCCTTGTCCATCTCTTGGACACTCTCAACTC 697
||||| ||||| |||||||||| |||||||||| || ||||||||||||||| || |||
Sbjct 601 ATGGGGATATTCTCCGTGCCTCCATTATCTCCTTATCTATCTCTTGGACACTCCCACCTC 660
Query 698 GTAGTTACT-TAAGCTTCAGAGGGTCAAACTGGAAAAAATC-AA-CA--TT-GGATTGTT 751
|| |||| | |||||||| ||| |||||||||| || | || || || || |||||||
Sbjct 661 GTGGTTA-TGTAAGCTTCTGAGAGTCAAACTGGGAACATTCCAAGCAACTTTGGATTGTG 719
Query 752 TTCAAAGCTTCTAGATTAGCTGATTGTaaaaaaaTGTTTTACTATATTCATTCATTCTTC 811
|| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||| ||
Sbjct 720 TTGAAAGCTTCTAGATTAGCTGATTGTAAAAAT-TGTTTCCCTATATTCATTGATTCATC 778
Query 812 TTAAATGCAATTCTTTCTACCC 833
||||||||||||||||||||||
Sbjct 779 TTAAATGCAATTCTTTCTACCC 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30803316936
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5