BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51210.1
Length=734
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495191 jgi|Araly1|495191|fgenesh2_kg.8__1007__AT5G51210.1 819 0.0
> Ahg495191 jgi|Araly1|495191|fgenesh2_kg.8__1007__AT5G51210.1
Length=695
Score = 819 bits (443), Expect = 0.0
Identities = 517/553 (93%), Gaps = 4/553 (1%)
Strand=Plus/Plus
Query 1 ACATCACTACCTTTTCTCTGCTAATTTCTACTATTTGTGTTGGAGGGATATATTATAATA 60
|||||||||||| |||||||||||||||||| ||||||||||||||||| || || | |
Sbjct 1 ACATCACTACCTATTCTCTGCTAATTTCTACCATTTGTGTTGGAGGGAT-TACAAT-A-A 57
Query 61 AAAAGAACCAATGGCGGACCAAACAAGAACCCATCACGAGATGATAAGCCGAGACAGTAC 120
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 58 AAAAGAATCAATGGCGGACCAAACAAGAACCCATCTCGAGATGATAAGCCGAGACAGTAC 117
Query 121 CCAAGAGGCCCATCCGAAGGCCAGGCAGATGGTGAAGGCAGCAACCGCTGTCACAGCCGG 180
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 118 CCAAGAGTCCCATCCGAAGGAGAGGCAGATGGTGAAGGCAGCAACCGCTGTCACAGCCGG 177
Query 181 TGGATCCCTACTTGTCCTCTCCGGCTTAACACTCGCTGGAACAGTCATCGCACTCACGGT 240
||||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 178 TGGATCCCTCCTTGTCCTTTCCGGCTTAACGCTCGCCGGAACAGTGATCGCACTCACGGT 237
Query 241 GGCTACTCCTCTCCTCGTCATCTTCAGCCCCGTCTTGGTTCCAGCAGTGGTAACCGTTGC 300
|| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 238 AGCCACTCCTCTCCTCGTCATCTTCAGCCCCGTCTTGGTTCCAGCAGTGATCACCGTCGC 297
Query 301 TCTCATCATTACCGGATTCCTTGCATCCGGTGGCTTTGGAATAGCCGCCATTACCGCCTT 360
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 298 TCTCATCATCACCGGATTTCTTGCATCTGGTGGCTTTGGAATAGCCGCCATTACCGCCTT 357
Query 361 CTCTTGGCTCTACAGGCACATGACGGGATCTGGATCGGATAAGATAGAGAATGCTCGGAT 420
||||||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||
Sbjct 358 CTCTTGGGTCTACAGGCACTTGGCGGGATCTGGATCGGAGAAGATAGAGAATGCTCGGAT 417
Query 421 GAAGGTTGGAAGCAGAGTGCAGGATACTAAGTATGGGCAGCACAACATTGGAGTCCAACA 480
|||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 GAAGGTGGGGAGCAGAGTGCAGGATACCAAGTATGGGCAGCACAACATTGGAGTCCAACA 477
Query 481 CCAACAAGTTTCTTAAAATTCAAAGGCTAAAAACGATTTCC-ACATTAAATTGTCATCCA 539
|||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 478 CCAACAAGCTTCTTAAAATTCAAAGGCTAAAATCGATTTCCCACATTAAATTGTCATCCA 537
Query 540 TCGTTAGATCTCT 552
||||| |||||||
Sbjct 538 TCGTTTGATCTCT 550
Score = 167 bits (90), Expect = 1e-40
Identities = 130/147 (88%), Gaps = 11/147 (7%)
Strand=Plus/Plus
Query 597 TATAATAACATGCAATGTATGATGTAATCTTGTTGTTG-TTGTATGAGTAATGTTTTGAT 655
|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 550 TATAATAACATGCAATGTATGATGTAATCTTGTTGTTGGTT-TGCGAGTAATGTTTTGAT 608
Query 656 CCTTCTATGC---G--AGCGGAAATCTTCATATAGACAGT--GT--CATTGGTACATTAC 706
|||||||| | | |||||||||||||||||||||| | || ||||||||||||||
Sbjct 609 CCTTCTATTCTATGTGAGCGGAAATCTTCATATAGACACTTAGTGGCATTGGTACATTAC 668
Query 707 ACAAATCTTCATAATCTCCTTCTACGC 733
||||||||||| |||| ||||||||||
Sbjct 669 ACAAATCTTCAGAATCACCTTCTACGC 695
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27029148153
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5