BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51210.1 Length=734 Score E Sequences producing significant alignments: (Bits) Value Ahg495191 jgi|Araly1|495191|fgenesh2_kg.8__1007__AT5G51210.1 819 0.0 > Ahg495191 jgi|Araly1|495191|fgenesh2_kg.8__1007__AT5G51210.1 Length=695 Score = 819 bits (443), Expect = 0.0 Identities = 517/553 (93%), Gaps = 4/553 (1%) Strand=Plus/Plus Query 1 ACATCACTACCTTTTCTCTGCTAATTTCTACTATTTGTGTTGGAGGGATATATTATAATA 60 |||||||||||| |||||||||||||||||| ||||||||||||||||| || || | | Sbjct 1 ACATCACTACCTATTCTCTGCTAATTTCTACCATTTGTGTTGGAGGGAT-TACAAT-A-A 57 Query 61 AAAAGAACCAATGGCGGACCAAACAAGAACCCATCACGAGATGATAAGCCGAGACAGTAC 120 ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 58 AAAAGAATCAATGGCGGACCAAACAAGAACCCATCTCGAGATGATAAGCCGAGACAGTAC 117 Query 121 CCAAGAGGCCCATCCGAAGGCCAGGCAGATGGTGAAGGCAGCAACCGCTGTCACAGCCGG 180 ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 118 CCAAGAGTCCCATCCGAAGGAGAGGCAGATGGTGAAGGCAGCAACCGCTGTCACAGCCGG 177 Query 181 TGGATCCCTACTTGTCCTCTCCGGCTTAACACTCGCTGGAACAGTCATCGCACTCACGGT 240 ||||||||| |||||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct 178 TGGATCCCTCCTTGTCCTTTCCGGCTTAACGCTCGCCGGAACAGTGATCGCACTCACGGT 237 Query 241 GGCTACTCCTCTCCTCGTCATCTTCAGCCCCGTCTTGGTTCCAGCAGTGGTAACCGTTGC 300 || ||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 238 AGCCACTCCTCTCCTCGTCATCTTCAGCCCCGTCTTGGTTCCAGCAGTGATCACCGTCGC 297 Query 301 TCTCATCATTACCGGATTCCTTGCATCCGGTGGCTTTGGAATAGCCGCCATTACCGCCTT 360 ||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 298 TCTCATCATCACCGGATTTCTTGCATCTGGTGGCTTTGGAATAGCCGCCATTACCGCCTT 357 Query 361 CTCTTGGCTCTACAGGCACATGACGGGATCTGGATCGGATAAGATAGAGAATGCTCGGAT 420 ||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||| Sbjct 358 CTCTTGGGTCTACAGGCACTTGGCGGGATCTGGATCGGAGAAGATAGAGAATGCTCGGAT 417 Query 421 GAAGGTTGGAAGCAGAGTGCAGGATACTAAGTATGGGCAGCACAACATTGGAGTCCAACA 480 |||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 418 GAAGGTGGGGAGCAGAGTGCAGGATACCAAGTATGGGCAGCACAACATTGGAGTCCAACA 477 Query 481 CCAACAAGTTTCTTAAAATTCAAAGGCTAAAAACGATTTCC-ACATTAAATTGTCATCCA 539 |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 478 CCAACAAGCTTCTTAAAATTCAAAGGCTAAAATCGATTTCCCACATTAAATTGTCATCCA 537 Query 540 TCGTTAGATCTCT 552 ||||| ||||||| Sbjct 538 TCGTTTGATCTCT 550 Score = 167 bits (90), Expect = 1e-40 Identities = 130/147 (88%), Gaps = 11/147 (7%) Strand=Plus/Plus Query 597 TATAATAACATGCAATGTATGATGTAATCTTGTTGTTG-TTGTATGAGTAATGTTTTGAT 655 |||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| Sbjct 550 TATAATAACATGCAATGTATGATGTAATCTTGTTGTTGGTT-TGCGAGTAATGTTTTGAT 608 Query 656 CCTTCTATGC---G--AGCGGAAATCTTCATATAGACAGT--GT--CATTGGTACATTAC 706 |||||||| | | |||||||||||||||||||||| | || |||||||||||||| Sbjct 609 CCTTCTATTCTATGTGAGCGGAAATCTTCATATAGACACTTAGTGGCATTGGTACATTAC 668 Query 707 ACAAATCTTCATAATCTCCTTCTACGC 733 ||||||||||| |||| |||||||||| Sbjct 669 ACAAATCTTCAGAATCACCTTCTACGC 695 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27029148153 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5