BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51220.1
Length=1177
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949667 jgi|Araly1|949667|scaffold_801554.1 1459 0.0
> Ahg949667 jgi|Araly1|949667|scaffold_801554.1
Length=886
Score = 1459 bits (790), Expect = 0.0
Identities = 854/886 (96%), Gaps = 0/886 (0%)
Strand=Plus/Plus
Query 122 ACCACAAGGGTTTCTCTCTAATGTTGCCCAGATTAGCTCGAGTCGTCACTCAAACCTCAA 181
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCACAAGGGTTTCTCTCAAATGTTGCCCAGATTAGCTCGAGTCGTCACTCAAACCTCAA 60
Query 182 AGCTTCGATCTTTGACCACTAATGGATCGATGAAAAATCTCTCCTTTTTCTCCCGATATG 241
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 AGCTTCGATCTTTGACCTCAAATGGATCGATGAAAAATCTCTCCTTTTTCTCCCGCTATG 120
Query 242 GGTACGCGACTGTTGCGCCGGCGGCAGCTGATCCTCCGTCGCAGAAGGATTTCCCCAGTA 301
|||||||||||||||| || ||||| |||||||||||| || ||||||||||||| ||||
Sbjct 121 GGTACGCGACTGTTGCACCTGCGGCGGCTGATCCTCCGCCGAAGAAGGATTTCCCTAGTA 180
Query 302 AATCTCCGATAAACTTGGATAAGATGTTTTGGTCAAAGCCATGTTCATTGGCTCTGCCTA 361
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 AATCTCCGATAAACTTGGATAACATGTTTTGGTCAAAGCCATGTTCATTGGCTCTGCCTA 240
Query 362 AAGACTCTCCTCTCAGAATTGATGAACCAGACTATGTAGGGATTCGTCGTTTCATACTAA 421
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 241 AAGACTCTCCTCTCAGAATTGATGAACCAGACTATGTAGGGATTCGTCTTTTCATACTAA 300
Query 422 AGATGATGATGTTCTATAGCAAACAGAGCATGTCTATCCGTGGGGCTAACGTGATCTACA 481
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 301 AGATGATGATGTTCTATAGCAAACAGAGCATGTCTATCCGTGGAGCAAACGTGATCTACA 360
Query 482 AGCGGATCATTGCACAAGTTGATAAACCTGCAATATATGATGTATTCAACTTGGAGAAAA 541
||||||||||||||||||| || ||||| ||||| |||||||| ||||||||||||||||
Sbjct 361 AGCGGATCATTGCACAAGTCGACAAACCAGCAATCTATGATGTTTTCAACTTGGAGAAAA 420
Query 542 CATTCAAAATAACGTATTCGCTGCTTGTCCTTCATATGTGGCTTGTTTTACGCCGCTTGA 601
||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CATTCAAAATAACATTTTCGCTGCTTGTCCTTCATATGTGGCTTGTTCTACGCCGCTTGA 480
Query 602 AGGAAGATGGACAGGAAGGTGTTGACCTTGGTCAATACGTCTATGAGATCTACAATCATG 661
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 AGGAAGATGGACAGGAAGGTGTTGACCTTGGTCAATATGTCTATGAGATCTACAATCATG 540
Query 662 ATGTTGAACTCAGGGTATCTAAAGCCGGGGTTAACTTGCTGCTAGCCAAGTGGATGAAGG 721
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 541 ATGTGGAACTCAGGGTATCTAAAGCCGGGGTTAACTTGCTGCTGGCCAAGTGGATGAAGG 600
Query 722 AGTTGGAGAGAATATTTTATGGAAATGTTGTTGCCTATGATGCTGCGCTACTTCCGGAAG 781
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 AATTGGAGAGAATATTTTATGGAAATGTTGTTGCCTATGATGCTGCGCTACTTCCAGAAG 660
Query 782 CTAAACCAAATGACCTACAAATCAAATTATGGAGGAACGTATTTTCTGATGATGGAACAA 841
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTAAACCAAATGAACTACAAATCAAATTATGGAGGAACGTATTTTCTGATGATGGAACAA 720
Query 842 CAACACCTGATAACACAGATTTAAAAACAGCACAGGCAATGGCAAGATATGTCCGGAGAG 901
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 721 CAACACCTGATAACACAGATTTAAAAGCAGCACAGGCAATGGCAAGATATGTCCGGAGAG 780
Query 902 AACTTGGTTCTCTTTCTTTAACAGATAAAGAGTCCATATTCTCCGGCAATTTCTCCTTCA 961
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 781 AACTTGGTTCTCTTTCTTTAACAGATAAAGAGTCCATATTCTCTGGTAATTTCTCCTTCA 840
Query 962 CCCCTTTGGAGAACAAGCCCCTGTGATTTGAATGAAATTAGAAGAA 1007
|||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 841 CCCCTTTGGAGAACAAGCCCCTGTGACTTGAATGAAATTAGAAGAA 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43917600384
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5