BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51230.1
Length=2427
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495194 jgi|Araly1|495194|fgenesh2_kg.8__1010__AT5G51230.2 3664 0.0
Ahg922872 jgi|Araly1|922872|scaffold_104153.1 154 3e-36
> Ahg495194 jgi|Araly1|495194|fgenesh2_kg.8__1010__AT5G51230.2
Length=2377
Score = 3664 bits (1984), Expect = 0.0
Identities = 2278/2413 (94%), Gaps = 48/2413 (2%)
Strand=Plus/Plus
Query 17 ctctttctctctctcAAGCTGTCAAAGTCACCTCTGTATTCGCGT---GAAGATAATTTC 73
|||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 1 CTCTTTCTCTCTCTCAAGCTGTCACAGTCTCCTCTGTATTCGCGTGAAGAAGATAATTTC 60
Query 74 TCACAATTAGGG---ttttttttttCTT-CTGAGTTAACTGTTCCATCTCCATCCTAATC 129
|||| ||||||| |||||||||| || ||| |||||||||||||||||||| ||||||
Sbjct 61 TCACGATTAGGGTTTTTTTTTTTTTTTTCCTGGGTTAACTGTTCCATCTCCATTCTAATC 120
Query 130 TTCACCTTCTCCTTGATTTCGAGATCTCTGTCAATTTGTTGAATCTGTTCTTTATCTAAT 189
|||| | ||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 121 TTCA----------G--TTCGAGATCTCTGTCAAATTGTAGAATCTGTTCTCCATCTAAT 168
Query 190 TAGCTCAACTCCGAGTCTTT-GCTGGATTTTGAAGCTTTTGTAGCTGAAGCAAATTTGTA 248
||| |||| |||||| |||| | | || ||| || |||||||||||||||||| |||||
Sbjct 169 TAGTTCAAGTCCGAGACTTTGGAT-TATGTTGCAGGTTTTGTAGCTGAAGCAAA-TTGTA 226
Query 249 ATCTGTGATGGTGTATGCA-CTGATTCTGGGTATGGTATTGTACTCTAGGATCTCGTAGC 307
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 227 ATCTGTGATGGTGTATGTAGC-GATTCTGGGTATGGTATTGTACTCTAGGATCTCGTAGC 285
Query 308 GAGAATGCCAGGCATTCCTCTTGTTAGTCGTGAAACCTCTTCTTGTTCAAGAAGCACAGA 367
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 286 CAGAATGCCAGGCATTCCTCTTGTCAGTCGTGAAACCTCTTCTTGTTCAAGAAGCACAGA 345
Query 368 GCAGATGTGCCATGAAGACTCCCGTCTGCGTATTTCGGAAGAGGAGGAGATTGCTGCTGA 427
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 346 GCAGATGTGCCATGAAGACTCCCGTGTGCGTTTTTCGGAAGAGGAGGAGATTGCTGCTGA 405
Query 428 AGAGAGCTTGGCTGCCTATTGCAAGCCTGTTGAACTCTACAATATCATTCAACGCCGTGC 487
||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 406 AGAGAGCTTGGCTGCTTATTGCAAGCCTGTTGAACTCTACAATATCCTTCAGCGCCGTGC 465
Query 488 TATTAGGAATCCCTTGTTTCTTCAGCGATGTTTGCATTATAAGATTGAGGCAAAACATAA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 TATTAGGAATCCCTTGTTTCTTCAGCGATGTTTGCATTATAAGATTGAGGCAAAACATAA 525
Query 548 AAGGAGAATACAAATGACTGTATTCCTCTCGGGCG-CTATAGATGCTGGGGTACAAACTC 606
|||||||||||||||||| || ||||||||||| | |||||||||||||||| |||||||
Sbjct 526 AAGGAGAATACAAATGACCGTGTTCCTCTCGGG-GACTATAGATGCTGGGGTTCAAACTC 584
Query 607 AAAAATTATTCCCTCTGTATATTTTGTTGGCAAGACTCGTTTCTCCTAAGCCTGTCGCTG 666
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 585 AAAAATTATTCCCTCTGTATATTTTGTTGGCAAGACTCGTTTCTCCTAAGCCTGTCGCCG 644
Query 667 AGTATTCTGCAGTATATAGGTTCAGTCGAGCATGTATCCTAACTGGTGGATTGGGGGTTG 726
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 645 AGTATTCTGCAGTATATAGGTTCAGTCGAGCATGTATCCTAACTGGTGGCCTGGGGGATG 704
Query 727 ATGGAGTTAGTCAAGCCCAAGCCAACTTTCTTCTCCCTGATATGAATAGACTCGCATTGG 786
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 705 ACGGAGTTAGTCAAGCCCAAGCCAACTTTCTTCTCCCTGAAATGAATAGACTCGCGTTGG 764
Query 787 AGGCAAAATCAGGATCACTCGCTATCTTGTTTATCAGCTTTGCTGGTGCGCAAAATTCTC 846
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 765 AGGCTAAATCAGGATCACTCGCTATCTTGTTTATCAGCTTTGCTGGTGCGCAAAATTCAC 824
Query 847 AATTTGGCATTGATTCAGGCAAGATTCATTCAGGAAATATAGGAGGACATTGTTTATGGA 906
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 AATTTGGCATTGATTCTGGCAAGATTCATTCAGGAAATATAGGAGGACATTGTTTATGGA 884
Query 907 GCAAAATA-CCTCTGCAATCACTGTATGCGTCGTGGCAGAAATCACCAAACATGGACTTG 965
|||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 885 GCAAAATACCCT-TGCAATCGCTGTATGCGTCGTGGCATAAATCTCCAAACATGGACTTG 943
Query 966 GGACAGAGAGTAGACACAGTCTCTCTTGTTGAAATGCAGCCTTGCTTCATAAAGCTAAAG 1025
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 944 GGACAGAGAGTAGACTCAGTCTCCCTTGTTGAAATGCAGCCTTGCTTCATAAAGCTAAAG 1003
Query 1026 TCCATGAGTGAGGAAAAGTGTGTCTCGATTCAGGTGCCCAGCAATCCACTCACCTCGAGC 1085
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1004 TCCATGAGTGAGGAAAAGTGTGTCTCGATTCAGGTGCCCAGCAATCCCCTCACCTCGAGC 1063
Query 1086 TCTCCGCAGCAAGTGCAAGTCACCATATCTGCAGAAGAAGTTGGGTCAACGGAAAAATCT 1145
|| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1064 TCGCCGCAGCAAGTGCAAGTCACCATATCTGCAGAAGAAGTTGGGGCAACAGAAAAATCT 1123
Query 1146 CCTTATAGTTCATTTTCATATAATGACATCTCTTCCTCTTCCTTGTTGCAAATTATCAGG 1205
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1124 CCTTATAGTTCATTTTCATATAATGACATCTCTTCCTCTTCATTGTTGCAAATTATCAGG 1183
Query 1206 TTGAGAACAGGAAATGTAGTTTTCAACTACAGATACTATAACAACAAATTGCAGAAGACT 1265
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1184 TTGAGAACACGAAATGTAGTTTTCAACTACAGATACTATAACAACAAATTGCAGAGGACT 1243
Query 1266 GAAGTAACTGAAGACTTTTCTTGTCCATTCTGCTTAGTAAAATGTGCCAGTTTCAAGGGC 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 GAAGTAACTGAAGACTTTTCTTGTCCATTCTGCTTAGTAAAATGTGCCAGTTTCAAGGGC 1303
Query 1326 CTGAGATATCACTTGCCATCAACCCACGATCTCCTCAATTTCGAGTTTTGGGTAACTGAA 1385
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1304 CTGAGATATCACTTGCCATCAACCCATGATCTTTTCAATTTCGAGTTTTGGGTAACTGAA 1363
Query 1386 GAATTTCAGGCGGTAAATGTCTCCCTCAAGACTGAGACAATGATATCCAAGGTTAATGAG 1445
|||| |||||| |||||||||||||||||||||||||||||||| ||| || ||||||||
Sbjct 1364 GAATATCAGGCTGTAAATGTCTCCCTCAAGACTGAGACAATGATGTCCGAGATTAATGAG 1423
Query 1446 GATGACGTTGACCCAAAGCAGCAAACTTTCtttttttCTTCCAAAAAATTCAGACGGAGG 1505
|||||||||||||||||||||||||||||||||||||| | | | | |||
Sbjct 1424 GATGACGTTGACCCAAAGCAGCAAACTTTCTTTTTTTC----A-------C-G--G-AGG 1468
Query 1506 AGGCAAAAGAGTCAGGTACGGAGCTCAAGGCAAGGGCCTCATCTTGGATTAGGTTGCGAG 1565
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1469 AGGCAAAAGAGTCAGGTACGGAGCTCAAGGCAAGGGCCTCATCTTGGCTTAGGTTGCGAG 1528
Query 1566 GTGCTAGATAAGACTGATGATGCTCATTCTGTTAGAAGTGAGAAGAGCCGAATACCACCT 1625
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 GTGCTAGATAAAACTGATGATGCTCATTCTGTTAGAAGTGAGAAGAGCCGAATACCACCT 1588
Query 1626 GGAAAGCATTACGAAAGAATTGGGGGTGCTGAGTCTGGTCAAAGAGTTCCTCCTGGCACG 1685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1589 GGAAAGCATTACGAAAGAATTGGGGGTGCTGAGTCTGGTCAAAGAGTTCCTCCTGGCACG 1648
Query 1686 AGTCCTGCAGACGTGCAATCATGTGGGGATCCAGATTATGTGCAGTCGATAGCTGGAAGT 1745
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1649 AGTCCTGCAGACGTGCAATCATGCGGGGATCCAGATTATGTGCAGTCGATAGCTGGAAGT 1708
Query 1746 ACAATGTTGCAGTTTGCAAAAACGAGGAAAATATCTATAGAACGGTCGGACTTGAGGAAC 1805
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1709 ACAATGTTGCAGTTTGCAAAAACGAGGAAACTATCTATAGAACGGTCGGACTTGAGGAAC 1768
Query 1806 CGAAGCCTCCTTCAGAAGAGACAGTTCTTCCACTCTCATCGAGCTCAGCCCATGGCTCTA 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769 CGAAGCCTCCTTCAGAAGAGACAGTTCTTCCACTCTCATCGAGCTCAGCCCATGGCTCTA 1828
Query 1866 GAACAAGTACTTTCGGACCGGGATAGTGAAGATGAAGTTGATGATGATGTGGCAGATTTT 1925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1829 GAACAAGTACTTTCGGACCGGGATAGTGAAGATGAAGTTGATGATGATGTGGCAGATTTT 1888
Query 1926 GAAGATAGAAGGATGCTCGATGATTTCGTTGATGTGACTAAAGATGAGAAACAGATGATG 1985
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1889 GAAGATAGAAGGATGCTTGATGATTTTGTTGATGTGACTAAAGATGAGAAGCAGATGATG 1948
Query 1986 CACATGTGGAACTCGTTTGTGAGGAAGCAGCGAGTATTAGCAGATGGTCACATTCCATGG 2045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1949 CACATGTGGAACTCGTTTGTGAGGAAGCAGCGAGTATTAGCAGATGGTCACATTCCATGG 2008
Query 2046 GCATGCGAGGCATTCTCAAGATTGCACGGACCCATCATGGTTCGAACACCGCACTTGATT 2105
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2009 GCATGTGAGGCATTCTCAAGATTGCATGGACCCATCATGGTTCGAACACCACACTTGATT 2068
Query 2106 TGGTGCTGGAGAGTGTTTATGGTGAAACTGTGGAACCACGGTCTTCTTGATGCCCGAACC 2165
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 2069 TGGTGCTGGAGAGTGTTTATGGTGAAACTGTGGAACCACGGCCTTCTTGACGCCCGAACC 2128
Query 2166 ATGAACAACTGTAATACCTTTCTCGAACAGCTCCAAATTTGAAAACCCAAGAAATCATTA 2225
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2129 ATGAACAACTGTAATACCTTTCTCGAACAGCTCCAAATTTGAAAACCCAAGAAACCATTA 2188
Query 2226 ATTTAAGTAGAAAAACAAAGAAA-GACAAGAGAAGAAGAGTTTTGGGTTCTCATTTAACT 2284
||||||||||| |||||| ||| | ||||||||||||||||||| ||||||| ||||
Sbjct 2189 ATTTAAGTAGAGGAACAAAAAAAAGGGGAGAGAAGAAGAGTTTTGGGGTCTCATT-AACT 2247
Query 2285 ACTTTTGGTGTTTTAAGAGAAAGAGGAGCATATTTATGCATGAATTTGTCCTCATCtttt 2344
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2248 ACTTTTGGTGTTTTAAGAGA--GAGGAGCATATTTATGCATGAATTTGTCCTC-TCTTTT 2304
Query 2345 ttttttttttttttAATTATAAATGTGTACATTGGCTTATCTTTGACGCTTGTTCTTCGA 2404
|||||||| ||||| ||||||||||||||||||||| ||||| |||||||||| || ||
Sbjct 2305 TTTTTTTTAATTTTATTTATAAATGTGTACATTGGCTCATCTTCGACGCTTGTTTTTTGA 2364
Query 2405 GTAATGCTTTATA 2417
||| |||||||||
Sbjct 2365 GTACTGCTTTATA 2377
> Ahg922872 jgi|Araly1|922872|scaffold_104153.1
Length=385
Score = 154 bits (83), Expect = 3e-36
Identities = 137/161 (85%), Gaps = 12/161 (7%)
Strand=Plus/Plus
Query 1608 AAGAGCCGAATACCACCTGGAAAGCATTACGAAAGAATTGGGGGTGCTGAGTCTGGTCAA 1667
||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| ||||
Sbjct 78 AAGAGCCGAATACCACCTGGAAAGCATTATGAACGAAATGGGGGTGCTGAGTCTAATCAA 137
Query 1668 AGAGTTCCTCCTGGCACGAGTCCTGCAGACGTGCAATCATGTGGGGATCCAGATTATGTG 1727
||||||||||||| || || | | | | |||||||||| |||||||||| |||
Sbjct 138 AGAGTTCCTCCTG-CA-GA--CGT--A--C----AATCATGTGGTGATCCAGATTCCGTG 185
Query 1728 CAGTCGATAGCTGGAAGTACAATGTTGCAGTTTGCAAAAAC 1768
||| | ||||||||||||||||||||||| |||||||||||
Sbjct 186 CAGACAATAGCTGGAAGTACAATGTTGCAATTTGCAAAAAC 226
Score = 132 bits (71), Expect = 1e-29
Identities = 77/80 (96%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1938 ATGCTCGATGATTTCGTTGATGTGACTAAAGATGAGAAACAGATGATGCACATGTGGAAC 1997
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 255 ATGCTCGATGATTTCGTTGATGTGACCAAGGATGAGAAGCAGATGATGCACATGTGGAAC 314
Query 1998 TCGTTTGTGAGGAAGCAGCG 2017
||||||||||||||||||||
Sbjct 315 TCGTTTGTGAGGAAGCAGCG 334
Score = 54.7 bits (29), Expect = 3e-06
Identities = 33/35 (94%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 2107 GGTGCTGGAGAGTGTTTATGGTGAAACTGTGGAAC 2141
|||||||||||||||||||||||||||| || |||
Sbjct 334 GGTGCTGGAGAGTGTTTATGGTGAAACTATGAAAC 368
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91454678245
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5