BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51260.1
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495196 jgi|Araly1|495196|fgenesh2_kg.8__1012__AT5G51260.1 1618 0.0
Ahg329150 jgi|Araly1|329150|fgenesh1_pm.C_scaffold_7001377 542 3e-153
> Ahg495196 jgi|Araly1|495196|fgenesh2_kg.8__1012__AT5G51260.1
Length=1171
Score = 1618 bits (876), Expect = 0.0
Identities = 1039/1113 (93%), Gaps = 30/1113 (3%)
Strand=Plus/Plus
Query 176 tcttcAACATCTCAATAT-AAACCCTAATTTTGATTCTAGTTTCTCAATTGGTGTGAATT 234
|||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||| |||
Sbjct 86 TCTTCAACATCTGAATATAAAACCCTAATTTTGATTCAAGTTTCTCAATTTGTGTGTATT 145
Query 235 CTCAGAAATTCAGAAAACCCTAATTTCGtttttttCTCTGTTCGGtttttttttGATTGA 294
|||||||||||||||| ||| || | | | ||| |||||||| ||||||
Sbjct 146 CTCAGAAATTCAGAAATCCC-AA---AG------T-T-GGTT---TTTTTTTTCGATTGA 190
Query 295 TTCGATTTCCTTTGATTCTCCGATGAGGATTTATC-TGATTTTCCTCGTGGTGGTTTCCT 353
|||||||||| ||||||||||||||||||||| | |||||||||| |||||| | ||||
Sbjct 191 TTCGATTTCCGGTGATTCTCCGATGAGGATTTA-CGTGATTTTCCTTGTGGTGATCTCCT 249
Query 354 TATTTACCTCCGCGTTTTCCGATTCGATTCTCGAGTACCCGTCGGAAATCGAGAGTCGAC 413
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TATTTGCCTCCGCGTTTTCCGATTCGATTCTCGAGTACCCGTCGGAAATCGAGAGTCGAC 309
Query 414 ACAAGAAAGCTGCCGAAGAAGATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGG 473
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 ACAAGAAAGCTGCCGATGAAGATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGG 369
Query 474 AGATGAACAATCTCGCGCCGTGGAAAACAATCCCGGTGGAATGTGCCGATTACGTGAAGG 533
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 370 AGATGAACAATCTCGCGCCGTGGAAAACAATTCCGGTGGAGTGTGCCGATTACGTGAAGG 429
Query 534 ACTATGTGATGGGTAAAGGCTACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGA 593
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ATTACGTGATGGGTAAAGGCTACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGA 489
Query 594 TCTTCGCGAGAAGCATCGAATTCTCCGGCGATGGCAAAGATATTTGGATTTTCGATATCG 653
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 TCTTCGCGAGCAGCGTCGAATTCTCCGGCGATGGCAAAGATATTTGGATTTTCGATATCG 549
Query 654 ATGAGACTCTCTTATCCAATCTTCCTTATTACATTGATCATGGTTTTGGGTTGGAGCTTT 713
||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 550 ATGAGACTCTCTTATCCAATCTTCCATATTACATTGACCATGGCTTTGGGTTGGAGCTTT 609
Query 714 TTGATCATTCGGAGTTTGATAAGTGGGTAGAGAGAGGAGTGGCACCAGCCATAGCACCAA 773
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 610 TTGATCATTCGGAGTTTGATAAGTGGGTAGAGAAAGGAGTGGCACCAGCTATAGCACCAA 669
Query 774 GCTTGAAGCTTTACCAAAGAGTGTTAGATTTGGGATACAAAGTTTTCTTGCTTACAGGGA 833
|||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 670 GCTTGAAGCTTTACCAGAGAGTGATAGATTTAGGATACAAAGTTTTCTTGCTTACAGGGA 729
Query 834 GGAAAGAGAGTCACAGGCTTGTCACTGTTGAAAATCTCATCAATGCTGGTTTCCAGAACT 893
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 730 GGAAAGAGAGCCACAGGCTTGTCACTGTTGAAAACCTGATCAATGCTGGTTTCCAGAACT 789
Query 894 GGGACAAGCTTATTCTCAGATCTCCAGAGGAACAGCACAAAATGGCGACACTATACAAAT 953
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 790 GGGACAAGCTTATTCTCAGATCTCCAGACGAACAGCACAAAATGGCGACACTATACAAAT 849
Query 954 CTGAGAAGAGAGATGAGATGGTGAAAGAGGGATATAGGATTAGAGGCAATTCAGGTGATC 1013
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 850 CTGAGAAGAGAGATGAGATGGTGAAAGATGGATACAGGATTAGAGGCAATTCAGGTGATC 909
Query 1014 AATGGAGTGATTTGTTGGGTACCTCCATGTCTCAACGATCTTTCAAACTCGCAAATCCAA 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 910 AATGGAGTGATTTGTTGGGTACCTCCATGTCTCAACGATCTTTCAAACTCGCCAATCCAA 969
Query 1074 TGTATTATATCCCCTGAAGGGCTTTATTTGACGACCTATATAAAACATTTCAAAAATCGT 1133
||||||||||||||||||| |||||||||||||| |||||||| |||| ||||||||
Sbjct 970 TGTATTATATCCCCTGAAGAACTTTATTTGACGAC--ATATAAAAGGTTTCGAAAATCGT 1027
Query 1134 ATATACTTACTATTAGAGCAATCAAAGTGTTTTTAAAGTTGGATTGCCTTTGCTTGTAAC 1193
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1028 ATATACTTACTA---GAGCAATCAAAGTGTTTTTAAAGTTCGATTGCCTTTGCTTGTAAC 1084
Query 1194 TTGTCAAGCTACTAAATGTACTAATAACAGAGAATGCTCTGTTTTATACAGAGTAGATA- 1252
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1085 TTGTCAAGCTATTAAATGTACTAATAAGAGAGAATGCTCTGTTTTATACAGAGTAGATAA 1144
Query 1253 GTATATAGTACTACTCGTTTTAACTTCtttttt 1285
||||| ||||| | |||||||||| ||||||
Sbjct 1145 GTATA--GTACT-C--GTTTTAACTT-TTTTTT 1171
> Ahg329150 jgi|Araly1|329150|fgenesh1_pm.C_scaffold_7001377
Length=783
Score = 542 bits (293), Expect = 3e-153
Identities = 549/670 (82%), Gaps = 28/670 (4%)
Strand=Plus/Plus
Query 435 ATGTCAATTTGCATTGTACGACCTGGAGATTCGCGGCGGAGATGAACAATCTCGCGCCGT 494
|||||||| | ||||| |||| |||||||||||||||||||| ||||||||||| || |
Sbjct 128 ATGTCAATCTACATTGCACGAGCTGGAGATTCGCGGCGGAGACAAACAATCTCGCTCCAT 187
Query 495 GGAAAA-CAATCCCGGTGGAATGTGCCGATTACGTGAAGGACTATGTGATGGGTAAAGGC 553
|||||| || ||| | | || || ||||||||||| | | || |||||||| ||||
Sbjct 188 GGAAAACCATTCCAGCT-GAGTGCGCCGATTACGTTTATCATTACCTGATGGGTGAAGGT 246
Query 554 TACCTCACCGATTTGGAGAGAGTCTCTGAAGAAGCTTTGATCTT-CGCGAGAAGCATCGA 612
||| || |||| ||||||||||||| ||||| ||| | | || |||||| ||| || |
Sbjct 247 TACGTCGTCGATGTGGAGAGAGTCTCCGAAGAGGCTAAGCT-TTACGCGAGCAGCTTCCA 305
Query 613 ATTCT-CCGGC-GATGGCAAAGATATTTGGATTTTCGATATCGATGAGACTCTCTTATCC 670
| ||| | || || || |||||||| |||||||||||||| |||||||| || || ||
Sbjct 306 A-TCTAAC-GCTGACGGGAAAGATATCTGGATTTTCGATATTGATGAGACGCTTTTGTCG 363
Query 671 AATCTTCCTTATTACATTGATCATGGTTTTGGGTTGG-AGCTTTTTGATCATTCGGAGTT 729
|||||||||||||| || || || |||| |||| ||| || ||||||||||||| ||||
Sbjct 364 AATCTTCCTTATTATATGGAACACGGTTGTGGGCTGGAAG-TTTTTGATCATTCCAAGTT 422
Query 730 TGATAAGTGGGTAGAGAGA-GGAGTGGCACCAGCCATAGCACCAAGCTTGAAGCTTTACC 788
|||||||||||| |||| | ||| | ||||| ||||||||||||||||||||||||||||
Sbjct 423 TGATAAGTGGGTGGAGAAAGGGA-TAGCACCTGCCATAGCACCAAGCTTGAAGCTTTACC 481
Query 789 AAAGAGTGTTA--GATTTGGGATACAAAGTTTTCTTGCTTACAGGGAGGAAAGAGAGTCA 846
||| || |||| |||||||| ||||||||| |||||||||||||| | | ||||| ||
Sbjct 482 AAA-AG-GTTATAGATTTGGGGTACAAAGTTATCTTGCTTACAGGGCGTAGAGAGAACCA 539
Query 847 CAGGCTTGTCACTGTTGAAAATCT-CATCAATGCTGGTTTCCAGAACTGGGACAAGCTTA 905
| || || ||||||| ||||| || | |||||| |||||||| ||||||||||||||||
Sbjct 540 CCGGGTTATCACTGTCGAAAACCTGCG-CAATGCCGGTTTCCATAACTGGGACAAGCTTA 598
Query 906 TTCTCAGATC-TCCAGAGGAACAGCACAAAATGGCGAC-ACTATACAAATCTGAGAAGAG 963
|||| ||||| | || || ||| |||||| ||||| | ||||||| || ||||||||
Sbjct 599 TTCTGAGATCGTTG-GATGAGCAGAACAAAACAGCGACCA-TATACAAGTCAGAGAAGAG 656
Query 964 AGATGAGATGGTGAAAGA-GGGATATAGGATTAGAGGCAATTCAGGTGATCAATGGAGTG 1022
|| |||||||||||||| ||| | |||||| ||||||||||||||||| ||||||||||
Sbjct 657 GGAGGAGATGGTGAAAGAAGGGTT-TAGGATCAGAGGCAATTCAGGTGACCAATGGAGTG 715
Query 1023 ATTTGTTGGGTACCTCCA-TGTCTCAACGATCTTTCAAACT-CGCAAATCCAATGTATTA 1080
|||| |||||| | | || |||| || |||| |||||||| | ||||||| ||||||||
Sbjct 716 ATTTATTGGGTTC-TGCAATGTCAGAAAGATCCTTCAAACTTC-CAAATCCCATGTATTA 773
Query 1081 TATCCCCTGA 1090
||||||||||
Sbjct 774 TATCCCCTGA 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48111121254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5