BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51270.1
Length=2460
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949672 jgi|Araly1|949672|scaffold_801559.1 2704 0.0
Ahg916746 jgi|Araly1|916746|Al_scaffold_0008_1497 2206 0.0
> Ahg949672 jgi|Araly1|949672|scaffold_801559.1
Length=2482
Score = 2704 bits (1464), Expect = 0.0
Identities = 1886/2087 (90%), Gaps = 39/2087 (2%)
Strand=Plus/Plus
Query 399 AAAGGTTGCAGTAGAACTTCAAGTGCTTGAATCAAATAGTGTTGCAGTGGCGATAACCAA 458
|||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 383 AAAGGTTGCAGTGGAACTTCAAGTCCTCGAATCAAATAGTGTTGCAGTAGCGATAACGAG 442
Query 459 AGAGGTTAATCAGCATTTGATCAGCAATCTTATCATTGGACGCTCATCTCAAGCTGCC-T 517
|||||||||| |||||||||||||||| ||| |||||||||| ||||| || | |||| |
Sbjct 443 AGAGGTTAATGAGCATTTGATCAGCAACCTTGTCATTGGACGTTCATCGCATGGTGCCTT 502
Query 518 C-C----TCGAGGAATTATGATATTACAGCGTCGATATCAGCATCTGTGTCAAACTTGTG 572
| | || ||| || |||||||||| || || |||||| | |||||||||||| ||
Sbjct 503 CTCGAGTTCCAGGTATCATGATATTACTGCAAAGAAATCAGCCTATGTGTCAAACTTATG 562
Query 573 CACAGTCTATGTTGTCTCAAACGGAGGAGTCCATATTCTTGC-A-A-A-AGA-CA-CGTC 626
|||||| ||||| |||||||| |||||| |||||||| | | | | | | | | ||
Sbjct 563 CACAGTTTATGTCGTCTCAAA---AGGAGTATATATTCTTTCAAGAGATAAATTATCATC 619
Query 627 AGACACGGAGAGGAATGACACTTC-AATAGAATCTGGTTTTGAGAGAAC---TTCCTCCA 682
|||||| ||||||||||| || || || ||| |||||| ||||| ||| ||||||||
Sbjct 620 AGACACCGAGAGGAATGAAAC-TCTAAGAGATTCTGGTAATGAGAAAACTGATTCCTCCA 678
Query 683 GCTGTTCTTCTGGTTCAGGAGCTAACTCAGATGTTATGTCGAATGCACTCAAATCTAACC 742
|||| ||||||||||||||| | ||||||||||| ||||| || ||||||||||||||||
Sbjct 679 GCTGGTCTTCTGGTTCAGGACCAAACTCAGATGTAATGTCAAACGCACTCAAATCTAACC 738
Query 743 CTCACACTCTGTCCAATAAGAGAATGCAAAATCTCCCGACAATAGTAAGAGGGGTTTCTG 802
|||| |||||||||| |||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 739 CTCATGCTCTGTCCAAGAAGAGATTGCAACATCTCCCGACAATAATAAGAGGGGTTTCTG 798
Query 803 TTCCTA-TG--GAAACTAGTTCTACTGAGTCAGATGAAACTAAAAAG-AGGTCTTCGGAT 858
|||||| || |||||||||||| ||||||||||||||||| | ||| | ||||||||||
Sbjct 799 TTCCTATTGATGAAACTAGTTCTGCTGAGTCAGATGAAACT-AGAAGTATGTCTTCGGAT 857
Query 859 GCTGCAGAGGAAGCAAGCAAGAGAAGTAGCCCTGAAACATCACGTAGTGTTTCTTGGAAT 918
| ||| || |||| |||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 858 GTTGCCGAAGAAGTAAGCAAGAGAGGTAGCCCTGAAACTTCGCGTAGTGTTTCTTGGAAT 917
Query 919 CCTCAGTTTAGAGATTTTGACGAGAGAAAAGACGCTATGAGTTC-----C-ATGTCTAGC 972
| |||||||||||||||||| ||||||||||||||||||||||| | |||| ||||
Sbjct 918 CATCAGTTTAGAGATTTTGATGAGAGAAAAGACGCTATGAGTTCTATGTCTATGTATAGC 977
Query 973 AACTTTGAATACGGAAATGTTGTTACTCCCCTTGGACACTATTTCACAGACAACCAGGAC 1032
||| |||||||||||| |||||||| |||| | |||||||||||||||||||||
Sbjct 978 AACCATGAATACGGAAA---TGTTACTCAAGGTGGAGATTATTTCACAGACAACCAGGAC 1034
Query 1033 ACGCTTAATGAAATTTCGAAGTTGAGAGCTGAGCTTAGACACGCTCATGAAATGTATGCA 1092
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1035 ACGCTCAATGAAATTTCGAAGTTGAGAGCTGAGCTTAGACACGCTCAAGAAATGTATGCA 1094
Query 1093 GTGGCTCAAGTTGAAACGTTGGATGCTTCTCGTAAGCTAAACGAGCTTAAGTTTGAAGAG 1152
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1095 GTGGCTCAAGTAGAAACGTTGGATGCTTCTCGCAAGCTAAACGAGCTTAAGTTTGAAGAG 1154
Query 1153 CTAACGCTTCTGGAGCACGAAACGAAGGGGATAGCaaaaaaggaaacagagaagtttgag 1212
|||||||| ||||||||||| ||||||| ||||| ||||||||||| ||| |||||||
Sbjct 1155 CTAACGCTAAAGGAGCACGAAATGAAGGGGTTAGCAGAAAAGGAAACACAGACGTTTGAG 1214
Query 1213 cagaagagaagggaagagagaga-agctgcacaaagaagagaagctgagatgaaagcaac 1271
||||| | ||||||||||||| | ||| ||||||||||||||| ||||| |||||| |
Sbjct 1215 AAGAAGTTACGGGAAGAGAGAGACA-CTGAACAAAGAAGAGAAGCCGAGATAAAAGCAGC 1273
Query 1272 ccatgaagccaaagagaaggagaagcttgaagaaagTTCCCTTGTGGCTCCTAAGCTGCA 1331
| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1274 CTGTGAAGCCAAAGAGAAGGAGAAGCTTGAAGAAATTTCCCTAGTGGCTCCTAAGCTGCA 1333
Query 1332 ATACCAAGAGTTCACGTGGGAAGAAATTATTAACGCAACTTCATCATTCTCTGAAGATTT 1391
||||||||||||||| ||||||||||| || | |||||||||||| |||||||||||| |
Sbjct 1334 ATACCAAGAGTTCACTTGGGAAGAAATCATCACCGCAACTTCATCTTTCTCTGAAGATCT 1393
Query 1392 AAAGATCGGAATGGGAGCTTACGGGGATGTTTACAAATGCAATCTGCATCATACAATCGC 1451
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1394 AAAGATCGGAATGGGAGCTTACGGGGATGTTTACAAGTGCAATCTGCATCATACAATTGC 1453
Query 1452 CGCTGTCAAAGTTTTGCATTCTGCTGAAAGTAGTCTATCCAAGCAATTCGATCAAGAGCT 1511
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1454 CGCTGTCAAAGTTTTGCATTCCGCTGAAAGTAGTCTATCCAAGCAATTCGATCAAGAGCT 1513
Query 1512 CGAAATCTTGAGCAAGATCAGGCACCCGCACTTGGTTCTTCTTCTAGGAGCATGTCCTGA 1571
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1514 CGAAATCTTGAGCAAGATCAGGCACCCACACTTGGTTCTCCTTCTAGGAGCATGTCCTGA 1573
Query 1572 TCATGGCGCTCTAGTGTATGAGTACATGGAAAACGGTAGCTTGGAAGATAGACTGTTCCA 1631
| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1574 ACGCGGCGCTCTAGTCTATGAGTACATGGAAAACGGTAGCTTGGAAGATAGACTATTCCA 1633
Query 1632 AGTCAACGATAGTCAACCAATCCCGTGGTTCGTGCGGTTAAGAATCGCTTGGGAAGTCGC 1691
||||||| ||||| |||||||||||||||| ||||| || |||||| ||||||||||||
Sbjct 1634 AGTCAACAATAGTGAACCAATCCCGTGGTTTGTGCGATTCAGAATCATTTGGGAAGTCGC 1693
Query 1692 ATCAGCGCTTGTTTTCCTCCACAAATCAAAACCGACACCAATCATCCACCGCGATCTTAA 1751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1694 ATCAGCGCTTGTTTTCCTCCACAAATCAAAACCGACACCAATCATCCACCGCGATCTGAA 1753
Query 1752 GCCTGCTAACATCTTGCTTAATCACAACTTTGTCAGCAAAGTAGGAGATGTTGGTCTTTC 1811
|| || |||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1754 ACCCGCGAACATCTTGCTTGACCACAACTTTGTCAGCAAAGTAGGAGATGTTGGTCTCTC 1813
Query 1812 CACAATGATCCAAGCTGCCGACCCATTGTCAACCAAATTCACAATGTACAAGCAGACAAG 1871
|||||||||||||| | | || ||||||| ||||||||||||||||||||| ||||||||
Sbjct 1814 CACAATGATCCAAG-T-C-GATCCATTGTTAACCAAATTCACAATGTACAAACAGACAAG 1870
Query 1872 CCCCGTGGGAACGTTATGCTATATCGATCCCGAATATCAACGAACCGGAAGGATATCTCC 1931
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1871 TCCCGTGGGAACGTTATGCTATATCGATCCTGAATATCAACGAACCGGAAGGATATCTCC 1930
Query 1932 AAAATCAGACGTGTATGCTTTCGGAATGATCATTCTGCAGCTTCTCACTGGTCAACAGGC 1991
|||||||||||| |||||||| |||||||||||||||||||||||||| | ||||| |||
Sbjct 1931 AAAATCAGACGTTTATGCTTTAGGAATGATCATTCTGCAGCTTCTCACCGCTCAACCGGC 1990
Query 1992 TATGGCACTGACATATACAGTAGAAACAGCCATGGAGAACAACAACGACGATGAGTTAAT 2051
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||
Sbjct 1991 TATGGCACTGACATATACAGTAGAAATAGCCATGGAGAACAACAATGACGATGAGCTAAT 2050
Query 2052 ACAGATTCTTGATGAAAAAGCAGGTAACTGGCCAATCGAAGAAACTAGGCAATTAGCTGC 2111
||||||||||||| ||||||| ||||| |||||||| |||||||| | |||||||| ||
Sbjct 2051 ACAGATTCTTGATAAAAAAGCGGGTAATTGGCCAATAGAAGAAACCCGCCAATTAGCCGC 2110
Query 2112 TTTAGCACTCCAGTGTACAGAGCTCCGTTCTAAAGACAGGCCTGATTTGGAAGATCAGAT 2171
|||||| ||| | ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2111 TTTAGCGCTCTATTGTACAGAGCTCCGTGCTAAAGACAGGCCTGATTTGGAAGATCAGAT 2170
Query 2172 TCTTCCAGTATTGGAAAGCTTGAAGAAAGTAGCTGATAAAGCAAGAAACTCGCTTTCCGC 2231
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2171 TCTTCCAGTATTGGAGAGCTTGAAGAAAGTAGCTGACAAAGCAAGAAACTCGCTTTCCGC 2230
Query 2232 TGCGCCAAGTCAACCTCCAAGCCATTTCTTCTGTCCATTACTTAAGGATGTGATGAAGGA 2291
||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||
Sbjct 2231 TGCGCCAAGTCAACCTCCAAGTCATTTCATCTGCCCATTACTTAAGGATGTGATGAAGGA 2290
Query 2292 GCCATGTATTGCGGCTGATGGGTACACTTATGACCGGAGAGCCATAGAGGAGTGGATGGA 2351
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2291 GCCATGTATTGCGGCTGATGGGTACACGTATGACCGGAGAGCCATAGAGGAGTGGATGGA 2350
Query 2352 GAACCACCGGACGTCTCCGGTTACTAATTCGCCGTTACAAAACGTGAACCTTTTGCCCAA 2411
||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2351 GAACCACCGGACGTCGCCGGTGACTAATTCGCCGTTACGAAACGTGAACCTTTTGCCCAA 2410
Query 2412 TCACACTCTTTACGCAGCCATCGTCGAATGGAGAAATAGAAATCAGT 2458
|||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 2411 TCACACCCTTTACGCAGCCATCGTTGAATGGAGAAATAGAAATCAGT 2457
Score = 466 bits (252), Expect = 3e-130
Identities = 331/368 (90%), Gaps = 10/368 (3%)
Strand=Plus/Plus
Query 1 ATGGACTCTTTTTTCAAAAACTCATATCTGGACCCAAAGGC-TGTGCGTGCCCAGCTTCC 59
|||||||||| |||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 21 ATGGACTCTTATTTCAAAAACTCATATCTAGACCCGAA-GCAGGTGCGTGCCCAGCTTCC 79
Query 60 TAAGA-GG---G--CTGATCTTGCGGCTCCTTCTGAACCGATGACCGTTGCGTTAGCTAT 113
||||| || | ||||||||||| |||||||| ||||| ||||| ||||| |||||||
Sbjct 80 TAAGAGGGCTAGCTCTGATCTTGCGTCTCCTTCTCAACCGCTGACCATTGCGATAGCTAT 139
Query 114 TAGTGGGAGCATTAAAAGCAAGAATGTAATTAAGTGGGCGCTCAACAAGTTTGGTTCTGA 173
||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 140 TAGTGGGAGCAGTAAAAGCAAGAATGTAGTTAAGTGGGCGCTCAAAAAGTTTGGTTCTGA 199
Query 174 CA-AAAATGTCACTTTCAAGCTGATTCACATCCATCCAAAGATTACTACTCTACCTACAG 232
| ||||||||| |||||||||||||||||| ||||||||| ||||| || ||||||||
Sbjct 200 -AGAAAATGTCATTTTCAAGCTGATTCACATTCATCCAAAGCTTACTTCTGTACCTACAC 258
Query 233 CTTCGGGGAACATAGTCTCTATATCCGAGGAACTAGAGGAAGTAGCGGCTGCTTATAGAC 292
||||||| |||| ||||||||| ||||||| || |||||| || |||||| |||||||||
Sbjct 259 CTTCGGGAAACACAGTCTCTATCTCCGAGGCACCAGAGGATGTGGCGGCTACTTATAGAC 318
Query 293 AAAAAGTGATGCAGGAGACAAAAGAAACTCTTCTTAAACCTTTCAAGAAAATGTGCGAGC 352
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 AAAACGTGATGCAGGAGACAAAAGAAACTCTTCTTAAACCTTTCAAGAAAATGTGCGAGC 378
Query 353 GGAAAAAG 360
||||||||
Sbjct 379 GGAAAAAG 386
> Ahg916746 jgi|Araly1|916746|Al_scaffold_0008_1497
Length=2565
Score = 2206 bits (1194), Expect = 0.0
Identities = 1287/1333 (97%), Gaps = 2/1333 (0%)
Strand=Plus/Plus
Query 1127 AGCTAAACGAGCTTAAGTTTGAAGAGCTAACGCTTCTGGAGCACGAAACGAAGGGGATAG 1186
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1232 AGCTAAATGAGCTTAAGTTTGAAGAGCTAACGCTTATGGAGCACGAAACGAAGGGGTTAG 1291
Query 1187 Caaaaaaggaaacagagaagtttgagcagaagagaagggaagagagagaagctgcacaaa 1246
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CAGCAAAGGAAACAGAGAAGTTTGAGCAGAAGAGAAGGGAAGAGAGAGAAGCTGCACAAA 1351
Query 1247 gaagagaagctgagatgaaagcaacccatgaagccaaagagaaggagaagcttgaagaaa 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 GAAGAGAAGCTGAGATGAAAGCAACCCATGAAGCCAAAGAGAAGGAGAAGCTTGAAGAAA 1411
Query 1307 gTTCCCTTGTGGCTCCTAAGCTGCAATACCAAGAGTTCACGTGGGAAGAAATTATTAACG 1366
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1412 GTTCCCTTGTGGCTCCTAAGCTGCAATACCAAGAGTTCACGTGGGAAGAAATCATTACCG 1471
Query 1367 CAACTTCATCATTCTCTGAAGATTTAAAGATCGGAATGGGAGCTTACGGGGATGTTTACA 1426
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1472 CAACTTCATCATTCTCTGAAGATTTAAAGATTGGAATGGGAGCTTACGGGGATGTTTACA 1531
Query 1427 AATGCAATCTGCATCATACAATCGCCGCTGTCAAAGTTTTGCATTCT-GCTGAAAGTAGT 1485
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1532 AATGCAATCTGCATCATACAATCGCCGCTGTCAAAGTTTTGCATT-TAGCTGAAAGTAGT 1590
Query 1486 CTATCCAAGCAATTCGATCAAGAGCTCGAAATCTTGAGCAAGATCAGGCACCCGCACTTG 1545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1591 CTATCCAAGCAATTCGATCAAGAGCTCGAAATCTTGAGCAAGATCAGGCACCCGCACTTG 1650
Query 1546 GTTCTTCTTCTAGGAGCATGTCCTGATCATGGCGCTCTAGTGTATGAGTACATGGAAAAC 1605
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1651 GTTCTTCTTCTAGGAGCATGTCCTGAGCACGGCGCTCTAGTCTATGAGTACATGGAAAAC 1710
Query 1606 GGTAGCTTGGAAGATAGACTGTTCCAAGTCAACGATAGTCAACCAATCCCGTGGTTCGTG 1665
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 GGTAGCCTGGAAGATAGACTGTTCCAAGTCAACGATAGTCAACCAATCCCGTGGTTCGTG 1770
Query 1666 CGGTTAAGAATCGCTTGGGAAGTCGCATCAGCGCTTGTTTTCCTCCACAAATCAAAACCG 1725
||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1771 CGGTTCAGAATCGCTTGGGAAGTGGCATCAGCACTTGTTTTCCTCCACAAATCAAAACCG 1830
Query 1726 ACACCAATCATCCACCGCGATCTTAAGCCTGCTAACATCTTGCTTAATCACAACTTTGTC 1785
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1831 ACACCAATCATCCACCGCGATCTTAAGCCCGCCAACATCTTGCTTAATCACAACTTTGTC 1890
Query 1786 AGCAAAGTAGGAGATGTTGGTCTTTCCACAATGATCCAAGCTGCCGACCCATTGTCAACC 1845
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1891 AGCAAAGTAGGAGATGTTGGTCTTTCCACAATGATCCAAGCTGCCAACCCATTGTCAACC 1950
Query 1846 AAATTCACAATGTACAAGCAGACAAGCCCCGTGGGAACGTTATGCTATATCGATCCCGAA 1905
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1951 AAATTCACCATGTACAAACAGACAAGCCCCGTGGGAACGTTATGCTATATCGATCCCGAA 2010
Query 1906 TATCAACGAACCGGAAGGATATCTCCAAAATCAGACGTGTATGCTTTCGGAATGATCATT 1965
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2011 TATCAAAGAACCGGAAGGATATCTCCAAAATCAGACGTCTATGCTTTCGGAATGATCATT 2070
Query 1966 CTGCAGCTTCTCACTGGTCAACAGGCTATGGCACTGACATATACAGTAGAAACAGCCATG 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071 CTGCAGCTTCTCACTGGTCAACAGGCTATGGCACTGACATATACAGTAGAAACAGCCATG 2130
Query 2026 GAGAACAACAACGACGATGAGTTAATACAGATTCTTGATGAAAAAGCAGGTAACTGGCCA 2085
||||||||| || |||| ||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 2131 GAGAACAACGACTACGACGAGCTAATACAGATTCTTGATCAAAAAGCGGGTAACTGGCCA 2190
Query 2086 ATCGAAGAAACTAGGCAATTAGCTGCTTTAGCACTCCAGTGTACAGAGCTCCGTTCTAAA 2145
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2191 ATCGAAGAAACCAGGCAATTAGCTGCTTTAGCACTCCAGTGTACAGAGCTCCGTTCTAAA 2250
Query 2146 GACAGGCCTGATTTGGAAGATCAGATTCTTCCAGTATTGGAAAGCTTGAAGAAAGTAGCT 2205
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 2251 GACAGGCCTGATTTGGAAGATCAGATTCTTCCAGTATTGGAGAGCTTAAAGAAAGTAGCT 2310
Query 2206 GATAAAGCAAGAAACTCGCTTTCCGCTGCGCCAAGTCAACCTCCAAGCCATTTCTTCTGT 2265
|||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 2311 GATAAAGCAAGAAACTCGCTTTCCACAGCGCCAAGTCAACCTCCAAGCCATTTCATCTGC 2370
Query 2266 CCATTACTTAAGGATGTGATGAAGGAGCCATGTATTGCGGCTGATGGGTACACTTATGAC 2325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371 CCATTACTTAAGGATGTGATGAAGGAGCCATGTATTGCGGCTGATGGGTACACTTATGAC 2430
Query 2326 CGGAGAGCCATAGAGGAGTGGATGGAGAACCACCGGACGTCTCCGGTTACTAATTCGCCG 2385
||||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||
Sbjct 2431 CGGAGAGCCATAGAGGAGTGGATGGAGAACCACCGGACGTCACCGGTGACTGAGTCGCCT 2490
Query 2386 TTACAAAACGTGAACCTTTTGCCCAATCACACTCTTTACGCAGCCATCGTCGAATGGAGA 2445
||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 2491 TTACAAAACGTGAGCCTTTTGCCCAATCACACTCTGTACGCAGCCATCGTTGAATGGAGA 2550
Query 2446 AATAGAAATCAGT 2458
|| ||||||||||
Sbjct 2551 AAAAGAAATCAGT 2563
Score = 1587 bits (859), Expect = 0.0
Identities = 1053/1143 (92%), Gaps = 27/1143 (2%)
Strand=Plus/Plus
Query 1 ATGGACTCTTTTTTCAAAAACTCATATCTGGACCCAAAGGCTGTGCGTGCCCAGCTTCCT 60
|||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||
Sbjct 1 ATGGACTCTTTTTTCAAAAACTCATATCTGGATCCAAAGCCGGCGCGTGCCCAGCTTCCT 60
Query 61 AAGA-GG---G--CTGATCTTGCGGCTCCTTCTGAACCGATGACCGTTGCGTTAGCTATT 114
|||| || | ||||||||||| |||||||| ||||| | | | ||||| ||||||||
Sbjct 61 AAGAGGGCTAGCTCTGATCTTGCGTCTCCTTCTCAACCGCTAAACATTGCGATAGCTATT 120
Query 115 AGTGGGAGC-ATTAAAAGCAAGAATGTAATTAAGTGGGCGCTCAACAAGTTTGGTTCTGA 173
||||||||| | |||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 121 AGTGGGAGCGA-TAAAAGCAAGAATGTACTGAAGTGGGCGCTCAACAAGTTTGGTTCTGA 179
Query 174 CAAAAATGTCACTTTCAAGCTGATTCACATCCATCCAAAGATTACTACTCTACCTACAGC 233
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 180 CAAAAATGTCACTTTCAAGCTGATTCACATCCATCCAAAAATTACTACTCTACCCACAGC 239
Query 234 TTCGGGGAACATAGTCTCTATATCCGAGGAACTAGAGGAAGTAGCGGCTGCTTATAGACA 293
|||||| |||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 240 TTCGGGAAACATAGTCTCTATATCCGAGGAACTAGAGGATGTGGCAACTGCTTATAGACA 299
Query 294 AAAAGTGATGCAGGAGACAAAAGAAACTCTTCTTAAACCTTTCAAGAAAATGTGCGAGCG 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 300 AAAAGTGATGCAGGAGACAAAAGAAACTCTTCTTAAACCTTTCAAGAAAATGTGCCAGCG 359
Query 354 GAAAAAGCTAAAGATCGATGAAACTCGTTTT-GAATCTTCTTTGACAAAGGTTGCAGTAG 412
||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 360 GAAAAAGATA----TCGATGAAACTCGTTTTTGAATCTTCTTTGACAAAGGTTGCAGTGG 415
Query 413 AACTTCAAGTGCTTGAATCAAATAGTGTTGCAGTGGCGATAACCAAAGAGGTTAATCAGC 472
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AACTTCAAGTGCTCGAATCAAATAGTGTTGCAGTGGCGATAACCAAAGAGGTTAATCAGC 475
Query 473 ATTTGATCAGCAATCTTATCATTGGACGCTCATCTCAA-GCTGCCTCCTCGAGGAATTAT 531
||||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||||
Sbjct 476 ATTTGATCAGCAATCTTGTCATTGGACGCGCATCTCAAAG-TGCCTCCTCGAGGAATTAT 534
Query 532 GATATTACAGCGTCGATATCAGCATCTGTGTCAAACTTGTGCACAGTCTATGTTGTCTCA 591
|||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 535 GATATTACAGCGACGATATCAGCAAGTGTGTCAAACTTATGCACAGTCTATGTTGTCTCA 594
Query 592 AACGGAGGAGTCCATATTCTTGCAAAAGACA------CGTCAGACACGGAGAGGAATGAC 645
|| |||||||||||||||||||||||||| | |||| ||||||||||||||||||
Sbjct 595 AAAGGAGGAGTCCATATTCTTGCAAAAGATAAATTATCGTCTGACACGGAGAGGAATGAC 654
Query 646 ACTTCAATAGAATCTGGTTTTGAGAGAACTTCCTCCAGCTGTTCTTCTGGTTCAGGAGCT 705
|||||| |||||||||| ||||||||| |||||||||||||| ||||||||| ||
Sbjct 655 ACTTCA---GAATCTGGTTATGAGAGAACAGATTCCAGCTGTTCTTCAGGTTCAGGACCT 711
Query 706 AACTCAGATGTTATGTCGAATGCACTCAAATCTAACCCTCACACTCTGTCCAATAAGAGA 765
||||||||| | ||||| ||||||||||||||||||||||| ||||||||| ||||||
Sbjct 712 AACTCAGATCTAATGTCAAATGCACTCAAATCTAACCCTCATGTTCTGTCCAAGAAGAGA 771
Query 766 ATGCAAAATCTCCCGACAATAGTAAGAGGGGTTTCTGTTCCTATGGAAACTAGTTCTACT 825
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 772 ATGCAAAATCTCCCGACAATAGTAAGAGAGGTTTCTGTTCTTACGGAAACTAGTTCTACT 831
Query 826 GAGTCAGATGAAACTAAAAAGAGGTCTTCGGATGCTGCAGAGGAAGCAAGCAAGAGAAGT 885
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GAGTCAGATGAAACTAGAAAGAGGTCTTCGGATGCTGCAGAGGAAGCAAGCAAGAGAAGT 891
Query 886 AGCCCTGAAACATCACGTAGTGTTTCTTGGAATCCTCAGTTTAGAGATTTTGACGAGAGA 945
|||||||||| ||| |||||||||||||||||||||| |||||||||||| || ||||||
Sbjct 892 AGCCCTGAAAAATCGCGTAGTGTTTCTTGGAATCCTCGGTTTAGAGATTTCGATGAGAGA 951
Query 946 AAAGACGCTATGAGTTCCATGTCTAGCAACTTTGAATACGGAAATGTTGTTACTCCCCTT 1005
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 952 AAAGACGCTATGAGTTCCATGTCTAGCAACTTTGAATATGGAAATGTT---ACTCCCTTT 1008
Query 1006 GGACACTATTTCACAGACAACCAGGACACGCTTAATGAAATTTCGAAGTTGAGAGCTGAG 1065
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1009 GGAAACTATTTCACAGACAACCAGGACACGCTCAATGAAATTTCGAAGTTGAGAGCTGAG 1068
Query 1066 CTTAGACACGCTCATGAAATGTATGCAGTGGCTCAAGTTGAAACGTTGGATGCTTCTCGT 1125
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1069 CTTAGACATGCTCATGAAATGTATGCAGTGGCTCAAGTAGAAACGTTGGATGCTTCTCGC 1128
Query 1126 AAG 1128
|||
Sbjct 1129 AAG 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92711656330
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5