BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51290.1
Length=2264
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495199 jgi|Araly1|495199|fgenesh2_kg.8__1015__AT5G51290.1 3295 0.0
> Ahg495199 jgi|Araly1|495199|fgenesh2_kg.8__1015__AT5G51290.1
Length=2159
Score = 3295 bits (1784), Expect = 0.0
Identities = 2021/2137 (95%), Gaps = 10/2137 (0%)
Strand=Plus/Plus
Query 60 TCCGTCTTGGCTCCGCCGTTCGGTTTCCGTTAATATTTTACAAAATCATTTCATTTTCTT 119
||||||| |||||||||||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 1 TCCGTCTCGGCTCCGCCGTTCGGTTTCCGTTACTATTTTCCAAAATCA-TTCATTTTCTC 59
Query 120 TTTTAACTTCCAAAAAATCGAATTT-TGTTGAATCTTCTAAGCTCAAGCTAATACCGATT 178
||||||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 60 TTTTAACTTCC-AAAAATCGAATTTGAGTTGAATCTTCTAAGCTCAAGCT-ATATCGATT 117
Query 179 TCGAAATGGAGGAAGGTCGTGACGACGAGTATTGTAGTTTTTCTAATTCCGGCGATCGCG 238
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 118 TCGAAATGGAGGAAGGTCGTGACGACGAGGATTCTAGTTTTTCTAATTCCGGCGATCGCG 177
Query 239 ACGGTGGATTGAGCGGTTGTTTTTTCTTGGATCATGTTGGCCAAGTTTTGCTTTCTCGAA 298
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
Sbjct 178 ACGGTGGATTGAGCGGTTGTTTTTTCTTGGATCATGTTGGCGAAGTTTTTCTTTCTCGGA 237
Query 299 ATCATGATGGTTTGTCCTGGAAATGTTTGGATTCTTCAGATTGTGAGGGAACAACTTGTT 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 ATCATGATGGTTTGTCCTGGAAATGTTCGGATTCTTCAGATTGTGAGGGAACAACTTGTT 297
Query 359 TGGGAATTATAATTTGCGAGAATTCCGAAACTGAGATCAAATTCTCTGATATTTATGCTG 418
| ||||||| || |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 298 TAGGAATTAGAAACTGCGAGAATTTCGAAACTGAGATCAAATTCTCTGATATTTATGCTG 357
Query 419 TGGAGTTTGTTAGCTATGGCTTGGTGCATAGTCCAAAGTTAGGACTTAGACATGCCAAAG 478
|||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||
Sbjct 358 TGGAGTTTGTTAACTATGGTTTGGTGCATAGTCCAAAGTCAGGCCTTAGACATGCCAAAG 417
Query 479 AATGTTTCCGGGAACGCTTGTTAAATACTCAAGAGATGTATCGGTTCACTGTCCACGGAT 538
||||||||||||||||||||||| |||||||||||||||||||||||||||| || || |
Sbjct 418 AATGTTTCCGGGAACGCTTGTTATATACTCAAGAGATGTATCGGTTCACTGTGCATGGTT 477
Query 539 TTCAAAGTTCACCAAAAGAGCCTTGTCTTTGGAACCTTGCTGCATTCACTTTTGGACATA 598
|||||||||||||||| ||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 478 TTCAAAGTTCACCAAAGGAGCCTTGTCTTTGGAAACTTGCCGCTTTCACTTTTGGCCATA 537
Query 599 TGGATTTGCAGACGTGCCAGAGTTGGATGGATCAATTGAATTACTCTTTGATCAAGGAGG 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 538 TGGATTTGCAGACGTGCCAGAGTTGGATGGATCAATTGAATTACTCTTTGATTAAGGAAG 597
Query 659 TAGAAAGACCAAGAAATCTTTTGGTATTTGTCCATCCAAAAAGTGGTAAAGGAAATGGCT 718
|||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 598 TAGAAAGACCAAGATATCTTTTGGTATTCGTCCATCCAAAAAGTGGCAAAGGAAATGGCT 657
Query 719 CCAAGGTCTGGGAAACTGTTTCCAAGATTTTCATTCGCGCTAAAGTTAATACAAAGGTGA 778
||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||
Sbjct 658 CCAAGGTCTGGGAAACTGTTTCCCAGATTTTTATTCGCGCTAAAGTTAATACCAAGGTGA 717
Query 779 TTGTAACAGAACGAGCAGGACATGCATTTGATGTAATGGCATCTATCCAAAACAAAGAGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TTGTAACAGAACGAGCAGGACATGCATTTGATGTAATGGCATCTATCCAAAACAAAGAGC 777
Query 839 TCCATACATATGATGGCATCATAGCTGTTGGTGGGGATGGTTTCTTCAACGAAATCCTTA 898
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TCCATTCATATGATGGCATCATAGCTGTTGGTGGGGATGGTTTCTTCAACGAAATCCTTA 837
Query 899 ATGGGTATCTCTTGTCGAGACTTAAAGTCCCTCTTCCACCTAGTCCTTCAGATTCCTTCA 958
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 838 ATGGATATCTTTTGTCGAGACTTAAAGTCCCTCTTCCACCAAGTCCTTCAGATTCCTTCA 897
Query 959 ATTCTGTTCAAAGTAGAGGTAGCTCCTCAGTTCCAGAACCAGGAGATGAAGTTCATGAGA 1018
|||||| ||||||||||| ||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 898 ATTCTGCTCAAAGTAGAGCTAGCTCCTCAGTTGCAGAATCAGGAGATGCAGTTCATGAGA 957
Query 1019 CTGACCAAAAGGAACACTATCCTCTTCTTCCTGATTCAGTTCAAGAGGTCATGAATTTCA 1078
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 958 CTGACCAAAAGGAACACTATCCTCTACTTCCTGACTCAGTTCAAGAGGTTATGAATTTCA 1017
Query 1079 GGACAGTCAATGGGTCATGTGAAGGAATTGAAGATCCCGATCATCCCTTCAGTAGTGAAA 1138
||||||||||||| |||||||||||||||||| ||| ||||||||||||| | ||| ||
Sbjct 1018 GGACAGTCAATGGCTCATGTGAAGGAATTGAATATCTTGATCATCCCTTCACTGGTGGAA 1077
Query 1139 GGCCTCGATTCGGCCTCATCCCGGCAGGTTCAACTGATGCAATAGTTATGTGCACCACAG 1198
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GGCCTCGATTTGGCCTCATCCCGGCAGGTTCAACTGATGCAATAGTTATGTGCACCACAG 1137
Query 1199 GAGCTCGTGATCCTGTAACATCAGCGCTGCATATCATTCTAGGTAGAAAGCTCTTCCTTG 1258
|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1138 GAGCTCGTGATCCTGTAACATCTTCGCTGCATATCATTCTAGGAAGAAAGCTCTTCCTTG 1197
Query 1259 ATGCAATGCAGGTTGTGCGGTGGAAAACAGCATCAACCTCGACGATTGAACCTTATATTC 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1198 ATGCAATGCAGGTTGTGCGGTGGAAAACAGCATCAACCTCGACGATTGAACCTTACATTC 1257
Query 1319 GTTATGCAGCCTCATTCGCTGGATACGGGTTTTATGGTGATGTCATTTCAGAAAGTGAAA 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GTTATGCAGCCTCATTCGCTGGATACGGGTTTTATGGTGATGTCATTTCAGAAAGTGAAA 1317
Query 1379 AATATCGGTGGATGGGTCCCAAACGCTATGACTATGTTGGAACTAAGATATTCTTGAAGC 1438
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1318 AATATCGGTGGATGGGTCCCAAACGCTATGATTACGTTGGAACTAAGATATTCTTGAAGC 1377
Query 1439 ACAGATCATACGAGGCAGAGGTAATGTTTGAAGAAGCTGAATCAGAGAATTCTAAAGCTT 1498
|||||||||| ||||||||||||| || ||||||||||||||||||||| ||||||||||
Sbjct 1378 ACAGATCATATGAGGCAGAGGTAACGTATGAAGAAGCTGAATCAGAGAACTCTAAAGCTT 1437
Query 1499 CCCTACA-TACGCGGAGTAAGACATGGCCATTTCGAAATACCACAAGATCAGAGAAAATA 1557
||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1438 CCCTACACT-CGCGGAGTAAGACATGGCCATTTCGAAATACCTCAAGATCAGAGAAAATA 1496
Query 1558 CTATGTCGTGCAAATTGCAAG-ATTTGTAACAGTAAGGTTGGTTGGAACAGTGCAAGCAC 1616
||||||||||| || |||| | || |||||||||||||||||| |||| | || ||||||
Sbjct 1497 CTATGTCGTGCGAACTGCA-GCATATGTAACAGTAAGGTTGGTGGGAATATTGTAAGCAC 1555
Query 1617 AACACTTAACCCCTGTCCAGAAAAAACAAGATGGTGTAGAACGAAAGGACGGTTTTTGAG 1676
||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1556 AACACCCAACTCCTGTCCAGAAAAAACAAGATGGTGTAGAACGAAAGGGCGGTTTTTGAG 1615
Query 1677 TATAGGTGCTGCAGTGATGTCAAACCGAAATGAAAGAGCACCTGATGGGCTTGTTGTGGA 1736
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1616 TATAGGTGCTGCAGTGATGTCAAACCGAAATGAAAGAGCACCTGATGGGCTTGTCGTGGA 1675
Query 1737 TGCACACCTCTCCGACGGTTTCCTTCATCTCATACTCATAAAAGATTGTTCTCGTCCCAA 1796
|||||| || || || ||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 1676 TGCACATCTTTCAGATGGTTTCCTTCACCTCATACTCATTAAGGATTGTTCTCGTCCCAA 1735
Query 1797 GTACTTATGGCACCTAACCGAGCTTGCAAAAAGAGGTGGAGAACCTTTGAACTTCGAGTT 1856
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1736 GTACTTATGGCACCTTACCGAGCTTGCGAAAAGAGGTGGAGAACCTTTGAACTTCGAGTT 1795
Query 1857 TGTGGAATATCACAAGACGCGAGCTTTCACGTTTACATCATTTGGGGAAGAGAGTGTGTG 1916
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1796 TGTGGAATATCACAAGACGCGAGCTTTCACATTTACATCATTTGGGGAAGAGAGTGTGTG 1855
Query 1917 GAATTTGGACGGAGAGATCTTTGAGGCTCACCAATTATCAGCCCAAGTATTGCGTGGCCT 1976
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1856 GAATTTGGACGGAGAGATCTTTGAGGCTCACCAATTATCAGCTCAAGTCTTGCGTGGCCT 1915
Query 1977 TATACCTCTGTTCGCATCTGGTCCAGAGATATAACAACATGCATGTGAATGTGGTTTTAT 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 TATACCTCTGTTCGCATCTGGTCCAGAGATATAACAACATGCATGTGAATGTGGTTTTAT 1975
Query 2037 ATGAAGCTTTTGTGCATAGTTAGTGACCCAAGTGAAAAAGCCAAATGAGACTGGAAACTA 2096
||| ||| || |||||||||||||||||||||||||||||| | |||||| |||||||||
Sbjct 1976 ATGGAGCGTT-GTGCATAGTTAGTGACCCAAGTGAAAAAGCTATATGAGATTGGAAACTA 2034
Query 2097 GAAAAGTCTTATAGTGAACATGACAATGTTGCCaaaaaaaGAACATGGCAAACATATTAT 2156
||||||| | ||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 2035 GAAAAGTATAATAGTGAACATCACAATGTTGCCAAAAAAGGAACAAGGCAAACATATTAT 2094
Query 2157 AGTATCCAAAAA-TTCGAGATGTAACCATTGGAGATT 2192
||||||||| || ||| |||||||||||||| |||||
Sbjct 2095 AGTATCCAAGAACTTCAAGATGTAACCATTGAAGATT 2131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85245968310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5