BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51310.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495203 jgi|Araly1|495203|fgenesh2_kg.8__1019__AT5G51310.1 1421 0.0
Ahg907967 jgi|Araly1|907967|Al_scaffold_0002_1048 106 3e-22
> Ahg495203 jgi|Araly1|495203|fgenesh2_kg.8__1019__AT5G51310.1
Length=969
Score = 1421 bits (769), Expect = 0.0
Identities = 917/985 (93%), Gaps = 23/985 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCTGGAACTTCCGGTGTTTGACATTTCAAAGCCTCTAAGCGAGTCATCATTGACG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTCTCTGGAACTTCCGGTGTTTGACATTTCAAAGCCTCTAAGCGAGTCATCGTTGACG 60
Query 61 TCACTACAAGATGCGTGTAAGGAGTGGGGTTTCTTCTACGTAACCAACCACGGCGTCTCC 120
|||||||||||||||||||| |||||||||||||||||||| |||||||| || ||||||
Sbjct 61 TCACTACAAGATGCGTGTAAAGAGTGGGGTTTCTTCTACGTGACCAACCATGGTGTCTCC 120
Query 121 CGCGACATGTACAAGAAACTCCGGAGATTCTCAACCGGAGTTTTCGAGCTAGAAGATGAG 180
||||||||||||||||||||||| |||| || || ||||| ||||| |||||||||
Sbjct 121 GGCGACATGTACAAGAAACTCCGGCGATTATCCGGGGGTGTTTTTGAGCTCGAAGATGAG 180
Query 181 GAGAAAATGAAAATGGGAGCGTCTAATTACACTCCCCGTTTCATCGCATCGCCTTTCTTT 240
||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 181 GAGAAAATGAAGATGGGAGCGTCTAATTACACTCCCCGTTTCATCGCTTCACCTTTCTTT 240
Query 241 GAAAGCCTTCGTGTCTCCGGTCCCGATTTCTATGCCTCGGCCAAGTCTTCCGTTGATGCT 300
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 241 GAAAGCCTTCGTGTCTCCGGTCCTGATTTCTATGCCTCGGCCAAGTCTTCCGTTTATGCT 300
Query 301 TTTTCCGACCAAGCTACCGATGAAGAGTTCAGTGGGTTGATGAAAGAATATGGAGAAAAG 360
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TTTTCAGACCAAGCTACCGATGAAGAGTTCAGTGCGTTGATGAAAGAATATGGAGAAAAG 360
Query 361 ATGACGAAACTATGTGAGAAGATAATGAAAGCAATCCTCTCTAGCTTCGGAGACGATCTT 420
|||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 ATGACGGAACTATGCGAGAAGATAATGAAAGCAATCCTCTCTAGCTTTGGAGACGATCTT 420
Query 421 CATCACAAGTATTACGAATCTGAGTTTGGAAACTGTCATGGCTACTTCAGGATCAACAAC 480
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATCACAAATATTACGAATCTGAGTTTGGAAACTGTCATGGCTACTTCAGGATCAACAAC 480
Query 481 TACACAATCCCTTCAGACCAAGAAGATGATCAT---CACAACG--G-TGATGAGCAAGAT 534
||||||||||||||||| ||||||||||||||| ||||||| | |||||| ||||||
Sbjct 481 TACACAATCCCTTCAGAACAAGAAGATGATCATGATCACAACGACGATGATGATCAAGAT 540
Query 535 TTGATCGAAGGGCTAGGAATGCACACTGACATGAGTTGCATCACGATCGTTGACCAAGAT 594
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 TTGATCGAAGGGCTTGGAATGCACACTGACATGAGTTGCATCACGATCGTTGATCAAGAT 600
Query 595 GACATCGGAGGTCTTCAAGTCAGAACCAGAGATGGGATTGGTCTGATGGATATCAACCCT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 GACATCGGAGGTCTTCAAGTCAGAACCAGAGATGGGATTGGTCTGATGGATATTAACCCT 660
Query 655 AAAGATGAAGCACTCGTTGTCAACGTCGGAGATCTATTGCATGCATGGACCAATGGACGG 714
||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 AAAGACGAAGCTCTCGTGGTCAACGTCGGAGATCTATTGCATGCATGGACTAATGGACGG 720
Query 715 CTGAGATCGTCTCAACACAGAGTTATCTTGAAACGACGTGGTTTCGTTGGTAATAGATTC 774
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TTGAGATCGTCTCAACACAGAGTTATCTTGAAACGACGTGGTTTCGTCGGTAATAGATTC 780
Query 775 TCACTTGCttttttttGGTGCTTT-GACGATGGGAAAGTCGTGTTTGCCCCTGATGAAGT 833
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 781 TCACTTGCTTTTTTTTGGTG-TTTCGACGATGGGAAAGTCGTGTTTGCCCCTGATGAAGT 839
Query 834 CGTCGGAGGTTGTGAGGGTATGAGGGTATTTCGATCATTTAAATGTGGGGATTATTTGAG 893
|| ||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 840 GGTGGGAGGTTGTGAGGGTGTGAGGATATTTCGGTCATTTAAATGTGGGGATTATTTGAG 899
Query 894 GTTTAGAGAGAGTAATGAGAAAGGGAAGTTCGAGAAGGTTGGGGACACGGTCGAAGACTT 953
||| ||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 900 GTTCAGAGAGA--A--G-----------TTCGAGAAGGTTGGGGACACGGTCGAAGACTT 944
Query 954 TGCACGAATTGAAGACCGTCGTTAA 978
|||||||||||||||| |||||||
Sbjct 945 TGCACGAATTGAAGACTATCGTTAA 969
> Ahg907967 jgi|Araly1|907967|Al_scaffold_0002_1048
Length=561
Score = 106 bits (57), Expect = 3e-22
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 913 AAAGGGAAGTTCGAGAAGGTTGGGGACACGGTCGAAGACTTTGCACGAATTGAAGACCGT 972
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 AAAGAGAAGTTCGAGAAGGTTGGGGACACGGTCGAAGACTTTGCACGAATTGAAGACCGT 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5