BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51310.1 Length=978 Score E Sequences producing significant alignments: (Bits) Value Ahg495203 jgi|Araly1|495203|fgenesh2_kg.8__1019__AT5G51310.1 1421 0.0 Ahg907967 jgi|Araly1|907967|Al_scaffold_0002_1048 106 3e-22 > Ahg495203 jgi|Araly1|495203|fgenesh2_kg.8__1019__AT5G51310.1 Length=969 Score = 1421 bits (769), Expect = 0.0 Identities = 917/985 (93%), Gaps = 23/985 (2%) Strand=Plus/Plus Query 1 ATGTCTCTGGAACTTCCGGTGTTTGACATTTCAAAGCCTCTAAGCGAGTCATCATTGACG 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGTCTCTGGAACTTCCGGTGTTTGACATTTCAAAGCCTCTAAGCGAGTCATCGTTGACG 60 Query 61 TCACTACAAGATGCGTGTAAGGAGTGGGGTTTCTTCTACGTAACCAACCACGGCGTCTCC 120 |||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||| Sbjct 61 TCACTACAAGATGCGTGTAAAGAGTGGGGTTTCTTCTACGTGACCAACCATGGTGTCTCC 120 Query 121 CGCGACATGTACAAGAAACTCCGGAGATTCTCAACCGGAGTTTTCGAGCTAGAAGATGAG 180 ||||||||||||||||||||||| |||| || || ||||| ||||| ||||||||| Sbjct 121 GGCGACATGTACAAGAAACTCCGGCGATTATCCGGGGGTGTTTTTGAGCTCGAAGATGAG 180 Query 181 GAGAAAATGAAAATGGGAGCGTCTAATTACACTCCCCGTTTCATCGCATCGCCTTTCTTT 240 ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 181 GAGAAAATGAAGATGGGAGCGTCTAATTACACTCCCCGTTTCATCGCTTCACCTTTCTTT 240 Query 241 GAAAGCCTTCGTGTCTCCGGTCCCGATTTCTATGCCTCGGCCAAGTCTTCCGTTGATGCT 300 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 241 GAAAGCCTTCGTGTCTCCGGTCCTGATTTCTATGCCTCGGCCAAGTCTTCCGTTTATGCT 300 Query 301 TTTTCCGACCAAGCTACCGATGAAGAGTTCAGTGGGTTGATGAAAGAATATGGAGAAAAG 360 ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 301 TTTTCAGACCAAGCTACCGATGAAGAGTTCAGTGCGTTGATGAAAGAATATGGAGAAAAG 360 Query 361 ATGACGAAACTATGTGAGAAGATAATGAAAGCAATCCTCTCTAGCTTCGGAGACGATCTT 420 |||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 ATGACGGAACTATGCGAGAAGATAATGAAAGCAATCCTCTCTAGCTTTGGAGACGATCTT 420 Query 421 CATCACAAGTATTACGAATCTGAGTTTGGAAACTGTCATGGCTACTTCAGGATCAACAAC 480 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CATCACAAATATTACGAATCTGAGTTTGGAAACTGTCATGGCTACTTCAGGATCAACAAC 480 Query 481 TACACAATCCCTTCAGACCAAGAAGATGATCAT---CACAACG--G-TGATGAGCAAGAT 534 ||||||||||||||||| ||||||||||||||| ||||||| | |||||| |||||| Sbjct 481 TACACAATCCCTTCAGAACAAGAAGATGATCATGATCACAACGACGATGATGATCAAGAT 540 Query 535 TTGATCGAAGGGCTAGGAATGCACACTGACATGAGTTGCATCACGATCGTTGACCAAGAT 594 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 541 TTGATCGAAGGGCTTGGAATGCACACTGACATGAGTTGCATCACGATCGTTGATCAAGAT 600 Query 595 GACATCGGAGGTCTTCAAGTCAGAACCAGAGATGGGATTGGTCTGATGGATATCAACCCT 654 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 601 GACATCGGAGGTCTTCAAGTCAGAACCAGAGATGGGATTGGTCTGATGGATATTAACCCT 660 Query 655 AAAGATGAAGCACTCGTTGTCAACGTCGGAGATCTATTGCATGCATGGACCAATGGACGG 714 ||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 661 AAAGACGAAGCTCTCGTGGTCAACGTCGGAGATCTATTGCATGCATGGACTAATGGACGG 720 Query 715 CTGAGATCGTCTCAACACAGAGTTATCTTGAAACGACGTGGTTTCGTTGGTAATAGATTC 774 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 721 TTGAGATCGTCTCAACACAGAGTTATCTTGAAACGACGTGGTTTCGTCGGTAATAGATTC 780 Query 775 TCACTTGCttttttttGGTGCTTT-GACGATGGGAAAGTCGTGTTTGCCCCTGATGAAGT 833 |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 781 TCACTTGCTTTTTTTTGGTG-TTTCGACGATGGGAAAGTCGTGTTTGCCCCTGATGAAGT 839 Query 834 CGTCGGAGGTTGTGAGGGTATGAGGGTATTTCGATCATTTAAATGTGGGGATTATTTGAG 893 || ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||| Sbjct 840 GGTGGGAGGTTGTGAGGGTGTGAGGATATTTCGGTCATTTAAATGTGGGGATTATTTGAG 899 Query 894 GTTTAGAGAGAGTAATGAGAAAGGGAAGTTCGAGAAGGTTGGGGACACGGTCGAAGACTT 953 ||| ||||||| | | |||||||||||||||||||||||||||||||| Sbjct 900 GTTCAGAGAGA--A--G-----------TTCGAGAAGGTTGGGGACACGGTCGAAGACTT 944 Query 954 TGCACGAATTGAAGACCGTCGTTAA 978 |||||||||||||||| ||||||| Sbjct 945 TGCACGAATTGAAGACTATCGTTAA 969 > Ahg907967 jgi|Araly1|907967|Al_scaffold_0002_1048 Length=561 Score = 106 bits (57), Expect = 3e-22 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 913 AAAGGGAAGTTCGAGAAGGTTGGGGACACGGTCGAAGACTTTGCACGAATTGAAGACCGT 972 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 46 AAAGAGAAGTTCGAGAAGGTTGGGGACACGGTCGAAGACTTTGCACGAATTGAAGACCGT 105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36331139901 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5