BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51330.1
Length=1997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495204 jgi|Araly1|495204|fgenesh2_kg.8__1020__AT5G51330.1 1559 0.0
Ahg910236 jgi|Araly1|910236|Al_scaffold_0001_490 326 5e-88
> Ahg495204 jgi|Araly1|495204|fgenesh2_kg.8__1020__AT5G51330.1
Length=1814
Score = 1559 bits (844), Expect = 0.0
Identities = 943/990 (95%), Gaps = 10/990 (1%)
Strand=Plus/Plus
Query 1004 AGGCCAGAGTTGAGGTCAGAAGCAA-GGAA-GCTGATTGGTGACACAGGTCTATTGGATC 1061
||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||
Sbjct 829 AGGTCAGAGTTGAGGTCAGAAGCAAGGGAACGCTGATTGGTGACACGGGTCTATTAGATC 888
Query 1062 ATCTGCTTAAGCACATGGCTGGTAAGGTGGCTCCTGGAGGTCAAGATAGGTTTATGAGAA 1121
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 889 ATCTGCTTAAGCACATGGCTAGTAAGGTGGCTCCTGGAGGTCAAGATAGGTTTAGGAGAA 948
Query 1122 AGCACAATGCAGATGGGGCAATGGAGTATTGGTTGGAGAGTTCTGATTTGATTCACATAA 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AGCACAATGCAGATGGGGCAATGGAGTATTGGTTGGAGAGTTCTGATTTGATTCACATAA 1008
Query 1182 GGAAAGAAGCAGGAGTTAAAGATCCTTACTGGACTCCTCCACCTGGTTGGAAGCTTGGTG 1241
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GGAAAGAAGCAGGAGTTGAAGATCCTTACTGGACTCCTCCACCTGGTTGGAAGCTTGGTG 1068
Query 1242 ACAACCCTTCTCAAGATCCTGTCTGCGCTGGAGAAATCCGTGACATCAGAGAAGAATTAG 1301
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1069 ACAACCCTACTCAAGATCCTGTCTGCGCCGGAGAAATCCGTGACATCAGAGAAGAATTAG 1128
Query 1302 CTAGCCTGAAAAGAGAATTGAAGAAACTTGCGTCAAAGAAGGAAGAGGAGGAGCTTGTTA 1361
||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 1129 CTAGCCTGAAAAGAGGATTGGAGAAACTCGCATCAAAGAAGGAAGAGGAGGAGCTTGTTA 1188
Query 1362 TCATGACTACGCCTAATTCTTGTGTTACTAGTCAGAATGATAATCTGATGACTCCAGCAA 1421
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 TCGTGACTACACCTAATTCTTGTGTTACTAGTCAGAATGATAATCTGATGACTCCAGCAA 1248
Query 1422 AGGAAATCTACGCTGATCTGCTGAAA-AAGAAATACAAAATTGAGGACCAGCTAGTGATT 1480
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1249 AGGAAATCTACGCTGATCTGCT-AAAGAAGAAATACAAAATTGAGGACCAGCTAGTGATA 1307
Query 1481 ATTGGAGAAACCTTGCGTAAAATGGAGGAAGACATGGGATGGCTTAAGAAAACAGTGGAC 1540
|||||||||||||||||| | |||||||||| |||||||| || |||||||||||||||
Sbjct 1308 ATTGGAGAAACCTTGCGTGACATGGAGGAAGGCATGGGATACCTAAAGAAAACAGTGGAC 1367
Query 1541 GAGAACTATCCTAAAAAGCCAGACTCAACAGAGACACCTTTGCTACTAGAGGATTCACCA 1600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 GAGAACTATCCTAGAAAGCCAGACTCAACAGAGACACCTTTGCTACTAGAGGATTCACCA 1427
Query 1601 CCAATACAGACACTAGAAGGAGAAGTGAAGGTGGTGAACAAGGGTAACCAAATCACAGAG 1660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 CCAATACAGACACTAGAAGGAGAAGTGAAGGTGGTGAACAAGGGTAACCAAATCACAGAG 1487
Query 1661 TCACCTCAAAACAGAGAAAAAGG-AAGGAAGCATGATCAACAAGAAAGATCACCACTTTC 1719
||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||
Sbjct 1488 TCACCTCAAAACAGAGAAAAAGGCAAG-AAGCATGATCAACAAGAACGATCACCACTTTC 1546
Query 1720 ACTAATAAGCAACACTGGTTTCAGAATCTGCAGGCCTGTGGGGATGTTCGCATGGCCCCA 1779
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1547 ACTTATAAGCAACACTGGTTTCAGAATCTGCAGGCCTGTGGGGATTTTCGCATGGCCCAA 1606
Query 1780 ATTGCCTGCTCTTGCTGCTGCTACTGATACTAATGCTTCTTCGCCAAGTCACAGACAAGC 1839
|||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct 1607 ATTGTCTGCTCTTGCTGCTGCTACTGATACTAATGCTTCTTCGCTAAGTCACCGACCAGC 1666
Query 1840 CTACCCATCCCCTTTTCCAGTCAAGCCACTTGCAGCTAAGCGTCCTCTTGGCTTGACGTT 1899
||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1667 CTACCCATCTCCTTGTCCAGTCAAGCCACTTGCAGCTAAGCGTCCTCTCGGCTTGACATT 1726
Query 1900 TCCCTTCACCATCATACCCGAAGAAGCTCCCA-AGAATCTCTTCAACGTTTGAAGTTGTC 1958
|||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |
Sbjct 1727 TCCCTTCACCATCATACCCGAAGAAGCTCCCACA-AATCTATTCAACGTTTGAAGTTGCC 1785
Query 1959 ACTGG-AAACTGATGCATCAGATCTTACTT 1987
| | | ||||||||||||||||||||||||
Sbjct 1786 A-TCGCAAACTGATGCATCAGATCTTACTT 1814
Score = 1234 bits (668), Expect = 0.0
Identities = 782/836 (94%), Gaps = 11/836 (1%)
Strand=Plus/Plus
Query 18 CGAGAGCAAAAATCATGAGTAGTACGATGTTCGTGAAACGGAATCCGATTAGAGAAACCA 77
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 CGAGAGCAAAAATCATGAGTGGAACGATGTTCGTGAAACGGAATCCGATTAGAGAAACCT 60
Query 78 CCGCCGGGAAAATCTCTTCGCCGTCGTCACCGACTTTGAATGTTGCAGTCGCGCATATAA 137
|||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 CCGCCGGGAAAAACTCTCCGCCGTCGTCACCGACTTTGAATGTTGCAGTTGCGCATATAA 120
Query 138 GAGCTGGATCTTATTACGAAATCGATGCTTCGATTCTTCCTCAGAGATCGCCGGAAAATC 197
||| |||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||
Sbjct 121 GAGTTGGATCTTATTACGAAATCGATTCTTCGATTCTTCCTCACAGATCGCCGGAGAATC 180
Query 198 TTAAATCGATTAGAGTCGTCATGG-TGAGCAAAATCACGGCGAGTGACGTGTCTCTCCGG 256
||||||||||||||||| |||||| || |||||||||||||||| || |||||||||||
Sbjct 181 TTAAATCGATTAGAGTCATCATGGTTG-GCAAAATCACGGCGAGCGATGTGTCTCTCCGA 239
Query 257 TACCCAAGCATGTTTTCACTCCGATCGCATTTCGATTACAGTAGGATGAACCGGAATAAA 316
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 TACCCAAGCATGTGTTCACTCCGATCGCATTTCGATTACAGTAGAATGAACCGGAATAAA 299
Query 317 CCGATGAAGAAGAGGAGTGGTGGTGGTCTTCTTCCTGTTTTCGACGAGAGTCATGTGATG 376
||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 300 CCGTTGAAGAAGAGGAGTGGCGGTGGTCTTCTTCCTGTTTTTGACGAGAGTCATGTGATA 359
Query 377 GCTTCGGAGCTAGCTGGAGACTTGCTTTACAGAAGAATCGCACCTCATGAACTTTCTATG 436
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 360 GCTTCGGAGCTAGCTGGAGACTTGCTTTATAGAAGAATCGCACCTCATGAAGTTTCTATG 419
Query 437 AATAGAAATTCCTGGGGTTTCTGGGTTTCTAGTTCTTCTCGCAGGAACAAATTTCCAAGA 496
||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 420 AATAGAAATTCCTGGAGTTTCTGGGTTTCTGGTTCTTCTCGCAGGAACAGATTTCCACGA 479
Query 497 AGGGAGGTGGTTTCTCAACCGGCGTACAATACTCGTCTCTGTCGCGCTGCTTCACCGGAG 556
|||||| |||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 480 AGGGAGATGGTTTCTCAACCGGCGTACAATACTAGCCTCTGTCGCGCGGCTTCACCGGAG 539
Query 557 GGAAAGTGCTCGTCTGAGCTGAAATCGGGAGGGATGATCAAGTGGGGAAGGAGATTGCGT 616
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 GGAAAGTGCTGGTCTGAGCTGAAATCGGGAGGGATGATTAAGTGGGGAAGGAGATTGCGT 599
Query 617 GTGCAGTATCAGAGTCGGCATATTGATACTAGGAAGAATAAGGAAGGTGAGGAGAGTTCT 676
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 600 GTGCAGTATCAGAGTCGGCATATTGATTCTAAGAAGAATAAGGAAGGTGAGGAGAGTTCT 659
Query 677 AGAGtgaaggatg-a-a-gtttacaaagaagaagagatggagaaagaagaggatgatgat 733
||||||||||||| | | | || | | |||||||||| |||||||| || |||||||||
Sbjct 660 AGAGTGAAGGATGAAGAGGCTTGC--A-AAGAAGAGATAGAGAAAGAGGATGATGATGAT 716
Query 734 gatgggaatgaaATAGGAGGCACTAAACAAG-AG--GCAAAGGAGATAACTAATGGAAAT 790
||||||||||||| || |||||||||||||| || ||||||||||||||| ||||||||
Sbjct 717 GATGGGAATGAAACAGAAGGCACTAAACAAGAAGATGCAAAGGAGATAACTGATGGAAAT 776
Query 791 CGTAAGAGAAAGCTGATTGAATCAAGTACTGAGAGACTCGCTCAGAAAGCTAAGGT 846
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 777 CGTAAGAGAAAGCTGATTGAATCAAGTACTGAGAGACTCGCTCAGAAGGCTAAGGT 832
> Ahg910236 jgi|Araly1|910236|Al_scaffold_0001_490
Length=366
Score = 326 bits (176), Expect = 5e-88
Identities = 204/218 (94%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 219 TGGTGAGCAAAATCACGGCGAGTGACGTGTCTCTCCGGTACCCAAGCATGTTTTCACTCC 278
||||| |||||||||||| || || || |||||||| ||||||||||||||||||||||
Sbjct 47 TGGTGGGCAAAATCACGGTGACCGATGTTTCTCTCCGATACCCAAGCATGTTTTCACTCC 106
Query 279 GATCGCATTTCGATTACAGTAGGATGAACCGGAATAAACCGATGAAGAAGAGGAGTGGTG 338
|||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||
Sbjct 107 GATCGCGTTTCGATTACAGCAGGATGAACCGGAATAAACCGTTGAAGAAGAGGAGCGGTG 166
Query 339 GTGGTCTTCTTCCTGTTTTCGACGAGAGTCATGTGATGGCTTCGGAGCTAGCTGGAGACT 398
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 167 GTGGTCTTCTTCCTGTTTTTGACGAGAGTCATGTGATGGCTTCGGAGCTAGCTGGAGACT 226
Query 399 TGCTTTACAGAAGAATCGCACCTCATGAACTTTCTATG 436
||||||||||||||||| ||||||||||| ||||||||
Sbjct 227 TGCTTTACAGAAGAATCACACCTCATGAAATTTCTATG 264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75075872895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5