BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51340.1
Length=2719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495205 jgi|Araly1|495205|fgenesh2_kg.8__1021__AT5G51340.1 4111 0.0
> Ahg495205 jgi|Araly1|495205|fgenesh2_kg.8__1021__AT5G51340.1
Length=2624
Score = 4111 bits (2226), Expect = 0.0
Identities = 2498/2628 (95%), Gaps = 24/2628 (1%)
Strand=Plus/Plus
Query 1 AGTGCTTTGTCGTCTTCTACCG--T-C--TCCGGACCAAAGAGCTCAAGTCACGCAGCTA 55
||||||||||||||||| || | | | |||||||||||||||||||||||||||||||
Sbjct 1 AGTGCTTTGTCGTCTTCCACTGTCTCCGGTCCGGACCAAAGAGCTCAAGTCACGCAGCTA 60
Query 56 ACAAAGTACAGA--TTTTTCCCTTGTTTCGATTGCAAAAGCGCATAAGCTTCGTACTTG- 112
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAAAGTACATATTTTTTTCCCTTGTTTCGATTGCAAAAGCGCATAAGCTTCGTACTTGT 120
Query 113 -C------CAAATCTGAAGTCAAACCAAATACACTGGTCAAACAAAAAGTCGACGAGCCC 165
| | |||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 121 CCTGTTGTCCAATCTGAAGTCAAAACAAAAACACTGGTCAAACAAAGAGTCGACGAGCCC 180
Query 166 ---C-AGATTCCGATAGCAAAACCAGTCGGACCCAGGATTTCGATGAGCCACACTGGTTA 221
| |||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct 181 AAGCAAGATTCCGATAGCAAAACCAGTCGGACCCATTATTTCAACGAGCCACACTGGTTA 240
Query 222 GCTTCCGACCCAATTCACGTCCTAGGTCACCGAGAACGTGACTTCTTTG-CATGTTTTGG 280
||| |||||||||||| ||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 241 AATTCTTACCCAATTCACGGCCTAGGTCACCGAAAACGTGACTTC-TTGACATGTTTTGG 299
Query 281 TTTTGTTGAGTCGGATGAGTTTTATTTTTGGCTTCTCTCTCGACCAGTAGCAGAAAGCTA 340
||| |||| || ||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 300 ATTTATTGATTCTTATGAGTTTTATCTTTGGCTTCTCTCTCGATCAGTAGCAGAAAACTA 359
Query 341 TGGAAGGTGCTGCTGTGGCGGAAGGGCTGTGGGGATTAGCGGATCACCACCAGAAGCTTG 400
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGGAAGGTGCTGCAGTGGCGGAAGGGCTGTGGGGATTAGCGGATCACCACCAGAAGCTTG 419
Query 401 GTGAGATCGGAAAAACCATAAAGTGCTTGGAAGCCATCTGCCAGAGTCAAATCTCTTTCC 460
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTGACATCGGAAAAACCATAAAGTGCTTGGAAGCCATCTGCCAGAGTCAAATCTCTTTCC 479
Query 461 TTCCTCTTGTTGAAGTCAAGTCTCGCCTCCGTTTGGCTGCTCTTTTACTCCGTTACTCTC 520
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 480 TTCCTCTTGTTGAAGTCAAGTCTCGCCTCCGTGTCTCTGCTCTTTTACTCCGTTACTCTC 539
Query 521 ACAATGTCAACCATGCCAAGTCCCATCTCGAGCGCTCTCTTCTTCTCCTTAAGTCTATTC 580
||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 540 ACAATGTCAGTCAGGCCAAGTCCCATCTCGAGCGCTCCCTTCTTCTCCTTAAGTCTATTC 599
Query 581 CTTCCTCCTACGATCTCAAATTTCAGAATTATAGCTTGCTCAGCCACTGTTATCACCTCC 640
|||| |||||||| |||||||||| || ||||||| ||||||||||||||||||||||||
Sbjct 600 CTTCTTCCTACGACCTCAAATTTCGGACTTATAGCCTGCTCAGCCACTGTTATCACCTCC 659
Query 641 TTGCTTCATTCCCTCCTCAACGCAACCTTCTTGTCAAGGCTCTCGAACTCGCATCTTCTG 700
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 660 TTGCTTCATTTCCTCCGCAACGCAACCTTCTCCTCAAGGCTCTCGAACTCGCATCTTCTG 719
Query 701 TCCCTCAGGATATTTCTGCGTACCTCTGGTCTTGCAATTTCAACTCTCAACTCGCTAACA 760
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 TCCCTCAGGATGTTTCTGCCTACCTCTGGTCTTGCAATTTCAACTCTCAGCTCGCTAACA 779
Query 761 CGTTCATTATCCAAGCCGATTTTCCTTCTTCTCTCTCCGCTCTCGAGTCTGGTTTTCTCT 820
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 CGTTCATTATCCAAGCCGATTTTCCTTCTTCTCTCTCCGCCCTCGAGTCTGGTTTTCTCT 839
Query 821 CTGCTTCACACATATGTTTTCCTGAGCTCCAGATGTTCTTCACAGCTTCAATGCTTCACG 880
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 840 CTGCTTCACACATATGTTTTCCTGAGCTCCAGATGTTCTTCACAGCTTCTATGCTTCACG 899
Query 881 TTCATATCATGCAATGGACTGATGATTATTCAGTGGAAAAAGCTGTCCAGCGATGCGATG 940
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 900 TTCATATCATGCAATGGACTGATGATTATTCAGTGGAAAAGGCTGTCCAGCGATGCGATG 959
Query 941 AGATCTGGCAGACCATTTCTTCAGACAAGACTGATCGCTGCCCCGGTTTGTTCTTCTACA 1000
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 960 AGATCTGGCAGACCATTTCTTCAGACAAGACTGATCGCTGCCCTGGTTTGTTCTTCTACA 1019
Query 1001 ATGAGATGTTGCATGTTTTCTATCGCCTCAGGCTCTGCGATTATAAGAACGCTCAGCATC 1060
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1020 ATGAGATGTTGCATGTTTTCTATCGCCTCAGGCTATGCGATTATAAGAACGCTCAGCATC 1079
Query 1061 ATGTCGACCGCTTGGACCAGGCAATGAATGCTCATTCGCATAAAATGCAGGAGATTCAGC 1120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATGTCGACCGCTTGGACCAGGCCATGAATGCTCATTCGCATAAAATGCAGGAGATTCAGC 1139
Query 1121 AACTTCTGGATGAGCTCAGTTCGTTAAATCTTAGTCTCTCCCGTTACGACCTTCCCTCCA 1180
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1140 AACTACTGGATGAGCTCAGTTCGTTAAATCTTAGTCTCTCCCGTTACGATCTTCCCTCCA 1199
Query 1181 GAGAAAGATCGGCCCTCTCAGCAAGACAATCTCAGCTTCAAGATCGTGTAAACGCATTAT 1240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1200 GAGAAAGATCGGCCCTCTCCGCAAGACAATCTCAGCTTCAAGATCGTGTAAACGCAGTAT 1259
Query 1241 CTCCATCTTCTAGCACTGTTAACTCTCTGGAGCCCGCATACTTTGGCAACATAGATCGTG 1300
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTCCATCTTCTACCACTGATAACTCTCTGGAGCCCGCATACTTTGGCAACATAGATCGTG 1319
Query 1301 GATGGACAGAGAAGCTACTGCTTTCACCATCTCCAATTGATGGAGAATGGCTACCAAAAA 1360
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1320 GATGGACAGAGAGGCTACTGCTTTCACCATCTCCAATTGATGGAGAGTGGCTACCAAAAA 1379
Query 1361 GTGCCATCGATGCTTTGGTCCATCTTATGGTTGTCATATCGGGACGTCCAAAGGGACTCT 1420
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1380 GTGCCATCTATGCTTTGGTCCATCTTATGGTTGTCATATCAGGACGTCCAAAGGGACTCT 1439
Query 1421 TTAAAGAGTGTTCAAAACGTATCGAGTCTGGACTGCAGATCATTCAAGATGAACTGATCA 1480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1440 TTAAAGAGTGTTCAAAACGTATCGAGTCTGGATTGCAGATCATTCAAGATGAACTGATCA 1499
Query 1481 AGCTTGGAATTACTGACGAAGTTAGAGAGGCTGATTTGCGGCACACAGCTATCTGGATGT 1540
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1500 AGCTTGGAATTACTGACGAAGTTAGAGAAGCTGATTTGAGGCACACAGCTATCTGGATGT 1559
Query 1541 CTAGGGTTTTTCTTATGCTACAGATGCAGTTTCTTGAGAATAGAGTGGCTTTGGAACTTA 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 CTAGGGTTTTTCTTATGCTACAGATGCAGTTTCTTGAGAATAGAGTGGCTTTGGAACTTA 1619
Query 1601 CAAGGTCTGATTATGTCGAAGCTGAAGAGGCTTTGGTTGATATGAAAAATTGGTTTACAC 1660
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1620 CAAGGTCTGATTTTGTCGAAGCTGAAGAGGCTTTGGTTGAGATGAAAAATTGGTTTACTC 1679
Query 1661 GATTTCCAACGATTTTACAAGCTTCTGAGTGTATGATTGAGATGCTCAGGGGGCAATATT 1720
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1680 GATTTCCAACGATTTTGCAAGCTTCTGAGTGTGTGATTGAGATGCTCAGGGGGCAATATT 1739
Query 1721 CTCATTCTGTTGGTTGCTACAGCGAAGCTGCTTTCCATTGTATTGAAGCGACCAAGTTGA 1780
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1740 CTCATTCTGTTGGTTGCTATAGTGAAGCTGCTTTCCATTGTATTGAAGCGACCAAGTTGA 1799
Query 1781 CAGAGAGTATTTCAATGCAAGCTTCGTGTCAAGCTTTTGCAGCTGTTTCTTACCTTACTA 1840
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1800 CAGAGAGTATATCAATGCAAGCTTCGTGTCAAGCATTTGCAGCTGTTTCTTACCTTACTA 1859
Query 1841 TTGGAGATGCTGAATCATCATCTAAGGCACTTGATTTAATTGGACCACTCAATGGAATGA 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 TTGGAGATGCTGAATCATCATCTAAGGCACTTGATTTAATTGGACCACTCAATGGAATGA 1919
Query 1901 CGAATTCACTATCTGGTGTTCGAGAGGAAGCTAGTATTCTCTTTGCTTACGGTCTTCTCT 1960
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1920 CGAATTCACTATCTGGTGTTCGAGAGGAAGCTAGTATTCTCTTTGCTTATGGTCTCCTCT 1979
Query 1961 TGATGAAGCAACGAGATCTACAGGAAGCAAGAAACCGTCTTGCCAAGGGTTTGCAGATCG 2020
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1980 TGATGAAGCAACGAGATCTACAGGAAGCAAGAAACCGTCTTGCCAAGGGTTTGCAAATCG 2039
Query 2021 CTCATAATCATATGGGTAACCTGCAGCTAGTTGCACAGTATTTGACACTCCTGGGAAATT 2080
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 CGCACAATCATATGGGTAACCTGCAGCTAGTTGCACAGTATTTGACACTCCTGGGAAATT 2099
Query 2081 TAGCTCTTTCCTTGCACGACACCGTACAAGCCAGGGAGATCCTGCGTTCCTCTCTTACAC 2140
||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2100 TAGCTCTCTCCTTGCATGACACCGTACAAGCCAGAGAGATTTTGCGTTCCTCTCTTACAC 2159
Query 2141 TTGCAAAGAAACTTTATGATATCCCAACTCAGCTATGGGTTCTATCCATCTTCACAGCTC 2200
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2160 TTGCAAAGAAACTCTATGATATCCCAACTCAGCTATGGGTTCTATCCATCTTCACAGCTC 2219
Query 2201 TGTATCAGCAGTTGGGTGAGAAAGGCAACGAGATGGAGAACGAAGAATTCCGGAAGAAGA 2260
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2220 TGTATCAGCAGTTGGGTGAGAAAGGGAACGAGATGGAGAACGAAGAATTCCGGAAGAAGA 2279
Query 2261 AATGGGATGAGTTGCAGAGTAGACTTGCTGAAGCGCGAGGATCAATTCATCACATTGAAC 2320
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 2280 AATGGGATGAGTTGCAGAGTAGACTTGCTGAAGCACGTGGATCAATTCACCACATTGAAC 2339
Query 2321 TGGTTGCGAAAGCTAGGATAGAATTGTATCAGATCGACAACAATCCACAAGAACAGTCAC 2380
|||||||||||||||||||||||||| ||||| ||||| | | |||||||||||||||
Sbjct 2340 TGGTTGCGAAAGCTAGGATAGAATTGCATCAGGTCGACGA---TGCACAAGAACAGTCAC 2396
Query 2381 TAGTAGCATCTGCGCAATCAATGCAAGGGAATCTGGATATTCCAGAGTCTGTTGGTATAG 2440
|||||||||||| ||||||| |||||| |||||| || || |||||||||||||||||||
Sbjct 2397 TAGTAGCATCTGGGCAATCATTGCAAGCGAATCTAGACATCCCAGAGTCTGTTGGTATAG 2456
Query 2441 AAGGTCCATCACCTGCTCCATCATCTTCAAGGCTCGTTGGTTTAGACACCGGAAAAAGAT 2500
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2457 AAGGTCCATCACCTGCTCCATCATCTTCAAGGCTGGTTGGTTTAGACACCGGAAAAAGAT 2516
Query 2501 GGGGAAAACGAAGGATGTAACTTTTAAAGACAGAGAGTACCTACGATTTTTGTATTAAGT 2560
|||||||||||||| | |||||| |||||||||||| |||||||||||||||||||||||
Sbjct 2517 GGGGAAAACGAAGGGTATAACTTATAAAGACAGAGAATACCTACGATTTTTGTATTAAGT 2576
Query 2561 GTGAGTTGTGTAGATGTGTTGATTAAAATGTAACTGTTGTAGTTGTAG 2608
|||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2577 GTGAGTTGTGTAGATGTGTTGATTAAAAAGGAACTGTTGTAGTTGTAG 2624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102577029785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5