BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51350.1
Length=3070
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916754 jgi|Araly1|916754|Al_scaffold_0008_1505 4263 0.0
> Ahg916754 jgi|Araly1|916754|Al_scaffold_0008_1505
Length=2685
Score = 4263 bits (2308), Expect = 0.0
Identities = 2566/2692 (95%), Gaps = 11/2692 (0%)
Strand=Plus/Plus
Query 125 ATGGCGTCTTCTAAGCATAATAAACTCTGTTCTTTCTTTTATCTTTGCCTCTTCTTGACT 184
|||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1 ATGGAGTCTTCTAAGCATAATAAACTCCGTTCTTGCTTTTATCTTTGCCTCTTCTTGACT 60
Query 185 TTAGTTGCAGCTGCTGAGCCTCAAACAGAATCTCTTCTCACTTTAAAATCTCAACTCACC 244
||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGTTGCAGC-G--GACCCTCAAACAGAATCTCTTCTCACTTTAAAATCTCAACTCACC 117
Query 245 GACAATTTCAACAGCTTAAAAGACTGGTTCATCAACACTCCTGAAGTTTCCGACAATCTT 304
||||||| |||||||||||||||||||||||| | |||||||| |||||||||||| ||
Sbjct 118 GACAATTCCAACAGCTTAAAAGACTGGTTCATTATCACTCCTGGAGTTTCCGACAAAGTT 177
Query 305 GTCGCTTGTTGTTCTTGGTCTGGTGTCCGATGTAACCAAAACTCAACTTCTGTTGTCTCC 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GTCGCTTGTTGTTCTTGGTCTGGTGTCCGATGTAACCAAAACTCAACTTCTGTTGTCTCC 237
Query 365 GTCGATCTCTCTTCCAAGAATCTCGCTGGGAGTTTATCAGGCAAGGAGTTCCTCGTCTTC 424
|||| |||||||||||||||||||| |||||||| ||||| |||| |||||||||||||
Sbjct 238 CTCGACCTCTCTTCCAAGAATCTCGCAGGGAGTTTGTCAGGGAAGGTGTTCCTCGTCTTC 297
Query 425 ACCGAACTCCTTGAACTCAACATCAGTGACAACTCGTTTTCCGGCGAGTTTCCGGCTGAG 484
|| ||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 298 ACTGAACTTCTTGAACTCAACATCAGTGACAACTCGTTTTCAGGCGAGTTTCCGACTGAG 357
Query 485 ATCTTCTTCAACATGACCAATCTCAGAAGCCTTGACATTAGCAGAAACAACTTCTCCGGA 544
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 358 ATCTTCTTTAACTTGACCAATCTCAGAAGCCTTGACATTAGCCGAAACAACTTCTCCGGA 417
Query 545 CGTTTCCCTGACGGTAAC---GGTGGTGACTCAAGTCTCAAGAATCTGATCTTTCTCGAC 601
||||| |||||||||||| ||||||| |||||||||||||||||||||| ||||||||
Sbjct 418 CGTTTTCCTGACGGTAACGGTGGTGGTGGCTCAAGTCTCAAGAATCTGATCCTTCTCGAC 477
Query 602 GCCTTGAGCAATAGCTTCTCCGGTCCATTACCGATCCATCTCTCTCAGTTAGAGAATCTC 661
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 478 GCCTTGAGCAATAGCTTCTCCGGCCCATTACCGATCCATCTCTCTCAGTTAGAGAATCTC 537
Query 662 AAGGTACTGAATCTCGCTGGGAGTTACTTCACTGGCTCGATTCCGAGTCAGTACGGATCT 721
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGGTACTGAATCTCGCTGGAAGTTACTTCACTGGCTCGATTCCGAGTCAGTACGGATCT 597
Query 722 TTCAAGAATCTTGAGTTTCTTCATCTTGGTGGGAATTTACTAAGTGGTCACATACCTCAA 781
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 598 TTCAAGAATCTTGAGTTTCTTCATCTTGGTGGAAATTTACTAAGTGGGCACATACCACAA 657
Query 782 GAGCTTGGGAATCTCACAACTTTGACTCACATGGAGATTGGATATAACTCATATGAAGGA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GAGCTTGGGAATCTCACAACTTTGACTCACATGGAGATTGGATATAACTCATATGAAGGA 717
Query 842 GTAATCCCTTGGGAAATAGGTTACATGAGTGAGCTCAAGTACCTCGACATTGCTGGAGCT 901
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 718 GTAATCCCTTGGCAAATAGGTTACATGAGTGAGCTCAAGTACCTCGACATTGCCGGAGCT 777
Query 902 AATCTCTCTGGCTTCTTACCAAAGCATTTCAGCAATCTCACAAAGCTTGAATCTTTGTTT 961
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AATCTCTCTGGCTTCTTACCAAAGCATTTCAGCAATCTCACAAAGCTTGAATCTTTGTTC 837
Query 962 CTCTTTAGGAACCATCTTTCTAGAGAAATCCCATGGGAGCTTGGAGAAATTACTTCTCTT 1021
||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 838 CTCTTCAGGAACCATCTTTCTAGAGAAATCCCATGGGAGCTTGGACAAATCACTTCTCTT 897
Query 1022 GTTAACTTAGACCTCTCAGACAACCATATCTCTGGAACCATACCAGAGAGTTTTTCAGGT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GTTAACTTAGACCTCTCAGACAACCATATCTCTGGAACCATACCAGAGAGTTTTTCAGGT 957
Query 1082 TTGAAGAATCTCAGGCTTTTGAATCTTATGTTCAATGAAATGAGTGGGACTCTCCCTGAA 1141
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 958 TTGAAGAATCTCAGGCTTTTGAATCTTATGTACAATGAAATGAGTGGGACTCTCCCTCAA 1017
Query 1142 GTAATTGCTCAGCTACCTTCTTTGGATACTCTCTTCATATGGAACAATTACTTCTCTGGG 1201
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1018 GTCATTGCTCAGCTACCTTCTTTGGATACTCTCTTTATATGGAACAATTACTTTTCTGGG 1077
Query 1202 TCACTTCCCAAAAGCTTGGGGATGAATTCAAAGCTTAGATGGGTGGACGTTTCCACCAAC 1261
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||
Sbjct 1078 TCACTTCCCAAAAGCTTGGGGATGAACTCAAAGCTTAGATGGGTCGATGTTTCTACCAAC 1137
Query 1262 AGTTTCCAAGGTGAAATCCCACAAGGTATTTGCTCAAGAGGTGTTCTTTTCAAGCTCATT 1321
|||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| |||||
Sbjct 1138 AGTTTCGAAGGTGAAATCCCACAAGGTATTTGCTCAGGAGGTGTTCTTTTTAAGGTCATT 1197
Query 1322 CTTTTCTCCAATAACTTCACTGGAACTCTGTCTCCATCTCTCTCAAATTGTTCAACGCTT 1381
|| ||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1198 CTATTCTCCAATAATTTCACTGGAACTCTGTCTCCATCACTCTCCAATTGTTCAACGCTT 1257
Query 1382 GTTCGTATCCGGCTTGAAGATAATTCATTCTCAGGTGTGATCCCTTTTAGCTTTAGCGAG 1441
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1258 GTTCGTATCCGGCTTGAAGATAATTCATTCTCTGGTGTGATCCCTTTTAGCTTTAGCGAG 1317
Query 1442 ATTCCTGATATCTCATACATAGACCTCTCTAGAAACAAACTCACAGGAGGTATTCCTTTA 1501
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1318 ATTCCTGATATCTCATACATAGACCTCTCAAGAAACAAACTTACAGGAGGCATTCCTTTA 1377
Query 1502 GATATATCCAAAGCTACAAAACTTGACTACTTCAATATCTCCAATAACCCTGAGCTAGGA 1561
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 1378 GATATATCCAAAGCTACTAAACTTGACTACTTCAATATCTCTAACAACCCTGAGCTAGGA 1437
Query 1562 GGCAAACTTCCACCGCATATTTGGTCTGCGCCTAGTCTTCAGAACTTCTCTGCATCATCA 1621
|| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1438 GGGAAACTTCCACCGCAGATTTGGTCTGCGCCTCGTCTTCAGAACTTCTCTGCATCATCC 1497
Query 1622 TGCAGTATCTCTGGTGGTCTCCCTGTGTTTGAATCCTGCAAATCTATCACTGTTATTGAA 1681
||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 1498 TGCAGTATCTCTGGTAGTCTCCCTGAGTTTGAATCCTGCAAAGCGATCACTGTTATTGAA 1557
Query 1682 TTGAGCAATAACAATATATCAGGGATGTTAACACCAACTGTTTCCACTTGTGGCTCTCTT 1741
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TTGAGCAACAACAATATATCAGGGATGTTAACACCAACTGTTTCCACTTGTGGCTCTCTT 1617
Query 1742 AAGAAGATGGATTTGTCACACAATAACTTGAGAGGTGCCATACCATCTGACAAAGTGTTT 1801
||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 1618 GAGAAGATGGATTTATCACACAATAACTTGAGTGGTTCCATCCCATCTGACAAAGTGTTT 1677
Query 1802 CAATCAATGGGGAAACATGCGTACGAGAGTAATGCAAACCTATGTGGGCTTCCTCTGAAG 1861
||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 1678 CAATCAATGGGGAAACATGCGTACGAGGGCAATGCAAACCTCTGTGGGCTTCCTCTGAAA 1737
Query 1862 TCATGTTCAGCTTACAGCTCAAGGAAGCTTGTGTCTGTTCTGGTAGCTTGTCTAGTCTCT 1921
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1738 TCATGTTCAGCTTACAGCTCAAAGAAGCTTGTGTCTGTTCTAGTAGCTTGTCTAGTCTCT 1797
Query 1922 ATTCTGCTAATGGTAGTTGCAGCTTTGGCATTGTACTATATTCGTCAAAGAAGTCAAGGA 1981
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1798 ATCCTGCTAATGGTAGTTGCAGCTTTGGCATTGTACTATATACGTCAAAGAAGTCAAGGT 1857
Query 1982 CAATGGAAGATGGTGTCTTTCGCGGGACTCCCTCATTTCACAGCAGATGATGTTTTGAGG 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 CAATGGAAGATGGTGTCTTTCGCGGGACTCCCTCATTTCACAGCAGATGATGTTTTGAGG 1917
Query 2042 AGCTTTGGTTCACCCGAACCTAGTGAAGCAGTTCCAGCTTCAGTGAGCAAAGCAGTTCTG 2101
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 AGCTTTGGTTCACCTGAACCTAGTGAAGCAGTTCCAGCTTCAGTGAGCAAAGCAGTTCTG 1977
Query 2102 CCAACAGGAATAACAGTCATAGTGAGAAAAATTGAGTTGCATGACAAGAAGAAGAGTGTT 2161
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||
Sbjct 1978 CCAACAGGAATAACAGTCATAGTGAGAAAAATCGAATTGCAAGACAAGAAGAAGAGCGTT 2037
Query 2162 GTCCTGAACGTTTTAACGCAGATGGGGAATGCAAGACATGTAAATCTGGTCAGATTGCTC 2221
|| |||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2038 GTTCTGAACTTTTTAACGCAGATGGGGAATGCAAGACACGTAAATCTGGTGAGATTGCTG 2097
Query 2222 GGGTTTTGTTACAACAATCATCTTGTGTATGTGTTGTATGATAATAACCTGCATACCGGG 2281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2098 GGGTTTTGTTACAACAATCATCTTGTGTATGTGTTGTATGATAATAACCTGCATACC-GG 2156
Query 2282 ACGACTCTAGCTGAGAAAATGAAGACAAAGAAGAAAGA-TTGGCAAACTAAGAAGAGGAT 2340
|||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||
Sbjct 2157 --GACTCTAGCTGAGAAAATGAGGACAAAGAAGAAAGACTGGGC-AACTAAGAAGAGGAT 2213
Query 2341 CATCACTGGTGTTGCTAAGGGACTTTGCTTTCTTCACCATGAATGTTTGCCTGCAATTCC 2400
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 2214 CATCACTGGTGTTGCTAAGGGACTTTGCTTTCTTCACCATGAATGCTACCCTGCAATTCC 2273
Query 2401 TCATGGAGATGTGAAGTCGTCTAATATATTATTCGATGACGATAAGATAGAGCCCTGCTT 2460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2274 TCATGGAGATGTGAAGTCGTCTAATATATTATTCGATGACGATAAGATAGAGCCCTACTT 2333
Query 2461 GGGTGAATTTGGGTTCAAATACATGCTACATTTGAACACAGATCAGATGAACGATGTTAT 2520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2334 GGGTGAATTTGGGTTCAAATACATGCTACATTTGAACACAGATCAGATGAACGATGTAAT 2393
Query 2521 AAGAGTGGAGAAGCAAAAGGACGTCTACAACTTTGGACAACTTATTTTGGAAATCTTAAC 2580
||||| |||| ||||||||||| | |||||||||||| |||| |||||||||||||||||
Sbjct 2394 AAGAGCGGAGCAGCAAAAGGACATTTACAACTTTGGAGAACTCATTTTGGAAATCTTAAC 2453
Query 2581 AAATGGTAAGCTGATGAATGCCGGTGGATTGATGATACAGAACAAGCCAAAGGATGGTCT 2640
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2454 AAATGGTAAGCTGATGAATGCCGGCGGATTGATGATACAGAACAAGCCAAAGGATGTTCT 2513
Query 2641 TCTAAGAGAAGTATACACAGAAAACGAAGTGAGTTCAAGTGATTTTAAACAAGGAGAAGT 2700
|||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2514 TCTACGAGAAGTATGCACAGAAAACGAAGTGGGTTCAAGTGATTTTAAACAAGGAGAAGT 2573
Query 2701 TAAAAGAGTTGTTGAGGTCGCACTTCTCTGCATAAGAAGTGACCAGTCTGACCGTCCTTG 2760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2574 TAAAAGAGTTGTTGAGGTCGCACTTCTCTGCATAAGAAGTGACCAGTCTGACCGTCCTTG 2633
Query 2761 CATGGAAGATGCACTCAGGTTATTGTCTGAAGCAGAGAATAGGTTCAAATAG 2812
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 2634 CATGGAAGATGCACTGAGGTTCTTGTCTGAAGCAGAGAATAGGTTTAAATAG 2685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115946705780
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5