BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51350.1 Length=3070 Score E Sequences producing significant alignments: (Bits) Value Ahg916754 jgi|Araly1|916754|Al_scaffold_0008_1505 4263 0.0 > Ahg916754 jgi|Araly1|916754|Al_scaffold_0008_1505 Length=2685 Score = 4263 bits (2308), Expect = 0.0 Identities = 2566/2692 (95%), Gaps = 11/2692 (0%) Strand=Plus/Plus Query 125 ATGGCGTCTTCTAAGCATAATAAACTCTGTTCTTTCTTTTATCTTTGCCTCTTCTTGACT 184 |||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 1 ATGGAGTCTTCTAAGCATAATAAACTCCGTTCTTGCTTTTATCTTTGCCTCTTCTTGACT 60 Query 185 TTAGTTGCAGCTGCTGAGCCTCAAACAGAATCTCTTCTCACTTTAAAATCTCAACTCACC 244 ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TTAGTTGCAGC-G--GACCCTCAAACAGAATCTCTTCTCACTTTAAAATCTCAACTCACC 117 Query 245 GACAATTTCAACAGCTTAAAAGACTGGTTCATCAACACTCCTGAAGTTTCCGACAATCTT 304 ||||||| |||||||||||||||||||||||| | |||||||| |||||||||||| || Sbjct 118 GACAATTCCAACAGCTTAAAAGACTGGTTCATTATCACTCCTGGAGTTTCCGACAAAGTT 177 Query 305 GTCGCTTGTTGTTCTTGGTCTGGTGTCCGATGTAACCAAAACTCAACTTCTGTTGTCTCC 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 GTCGCTTGTTGTTCTTGGTCTGGTGTCCGATGTAACCAAAACTCAACTTCTGTTGTCTCC 237 Query 365 GTCGATCTCTCTTCCAAGAATCTCGCTGGGAGTTTATCAGGCAAGGAGTTCCTCGTCTTC 424 |||| |||||||||||||||||||| |||||||| ||||| |||| ||||||||||||| Sbjct 238 CTCGACCTCTCTTCCAAGAATCTCGCAGGGAGTTTGTCAGGGAAGGTGTTCCTCGTCTTC 297 Query 425 ACCGAACTCCTTGAACTCAACATCAGTGACAACTCGTTTTCCGGCGAGTTTCCGGCTGAG 484 || ||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 298 ACTGAACTTCTTGAACTCAACATCAGTGACAACTCGTTTTCAGGCGAGTTTCCGACTGAG 357 Query 485 ATCTTCTTCAACATGACCAATCTCAGAAGCCTTGACATTAGCAGAAACAACTTCTCCGGA 544 |||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 358 ATCTTCTTTAACTTGACCAATCTCAGAAGCCTTGACATTAGCCGAAACAACTTCTCCGGA 417 Query 545 CGTTTCCCTGACGGTAAC---GGTGGTGACTCAAGTCTCAAGAATCTGATCTTTCTCGAC 601 ||||| |||||||||||| ||||||| |||||||||||||||||||||| |||||||| Sbjct 418 CGTTTTCCTGACGGTAACGGTGGTGGTGGCTCAAGTCTCAAGAATCTGATCCTTCTCGAC 477 Query 602 GCCTTGAGCAATAGCTTCTCCGGTCCATTACCGATCCATCTCTCTCAGTTAGAGAATCTC 661 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 478 GCCTTGAGCAATAGCTTCTCCGGCCCATTACCGATCCATCTCTCTCAGTTAGAGAATCTC 537 Query 662 AAGGTACTGAATCTCGCTGGGAGTTACTTCACTGGCTCGATTCCGAGTCAGTACGGATCT 721 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 538 AAGGTACTGAATCTCGCTGGAAGTTACTTCACTGGCTCGATTCCGAGTCAGTACGGATCT 597 Query 722 TTCAAGAATCTTGAGTTTCTTCATCTTGGTGGGAATTTACTAAGTGGTCACATACCTCAA 781 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||| Sbjct 598 TTCAAGAATCTTGAGTTTCTTCATCTTGGTGGAAATTTACTAAGTGGGCACATACCACAA 657 Query 782 GAGCTTGGGAATCTCACAACTTTGACTCACATGGAGATTGGATATAACTCATATGAAGGA 841 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 GAGCTTGGGAATCTCACAACTTTGACTCACATGGAGATTGGATATAACTCATATGAAGGA 717 Query 842 GTAATCCCTTGGGAAATAGGTTACATGAGTGAGCTCAAGTACCTCGACATTGCTGGAGCT 901 |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 718 GTAATCCCTTGGCAAATAGGTTACATGAGTGAGCTCAAGTACCTCGACATTGCCGGAGCT 777 Query 902 AATCTCTCTGGCTTCTTACCAAAGCATTTCAGCAATCTCACAAAGCTTGAATCTTTGTTT 961 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 AATCTCTCTGGCTTCTTACCAAAGCATTTCAGCAATCTCACAAAGCTTGAATCTTTGTTC 837 Query 962 CTCTTTAGGAACCATCTTTCTAGAGAAATCCCATGGGAGCTTGGAGAAATTACTTCTCTT 1021 ||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct 838 CTCTTCAGGAACCATCTTTCTAGAGAAATCCCATGGGAGCTTGGACAAATCACTTCTCTT 897 Query 1022 GTTAACTTAGACCTCTCAGACAACCATATCTCTGGAACCATACCAGAGAGTTTTTCAGGT 1081 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 898 GTTAACTTAGACCTCTCAGACAACCATATCTCTGGAACCATACCAGAGAGTTTTTCAGGT 957 Query 1082 TTGAAGAATCTCAGGCTTTTGAATCTTATGTTCAATGAAATGAGTGGGACTCTCCCTGAA 1141 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 958 TTGAAGAATCTCAGGCTTTTGAATCTTATGTACAATGAAATGAGTGGGACTCTCCCTCAA 1017 Query 1142 GTAATTGCTCAGCTACCTTCTTTGGATACTCTCTTCATATGGAACAATTACTTCTCTGGG 1201 || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 1018 GTCATTGCTCAGCTACCTTCTTTGGATACTCTCTTTATATGGAACAATTACTTTTCTGGG 1077 Query 1202 TCACTTCCCAAAAGCTTGGGGATGAATTCAAAGCTTAGATGGGTGGACGTTTCCACCAAC 1261 |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||| Sbjct 1078 TCACTTCCCAAAAGCTTGGGGATGAACTCAAAGCTTAGATGGGTCGATGTTTCTACCAAC 1137 Query 1262 AGTTTCCAAGGTGAAATCCCACAAGGTATTTGCTCAAGAGGTGTTCTTTTCAAGCTCATT 1321 |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| Sbjct 1138 AGTTTCGAAGGTGAAATCCCACAAGGTATTTGCTCAGGAGGTGTTCTTTTTAAGGTCATT 1197 Query 1322 CTTTTCTCCAATAACTTCACTGGAACTCTGTCTCCATCTCTCTCAAATTGTTCAACGCTT 1381 || ||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 1198 CTATTCTCCAATAATTTCACTGGAACTCTGTCTCCATCACTCTCCAATTGTTCAACGCTT 1257 Query 1382 GTTCGTATCCGGCTTGAAGATAATTCATTCTCAGGTGTGATCCCTTTTAGCTTTAGCGAG 1441 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1258 GTTCGTATCCGGCTTGAAGATAATTCATTCTCTGGTGTGATCCCTTTTAGCTTTAGCGAG 1317 Query 1442 ATTCCTGATATCTCATACATAGACCTCTCTAGAAACAAACTCACAGGAGGTATTCCTTTA 1501 ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 1318 ATTCCTGATATCTCATACATAGACCTCTCAAGAAACAAACTTACAGGAGGCATTCCTTTA 1377 Query 1502 GATATATCCAAAGCTACAAAACTTGACTACTTCAATATCTCCAATAACCCTGAGCTAGGA 1561 ||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| Sbjct 1378 GATATATCCAAAGCTACTAAACTTGACTACTTCAATATCTCTAACAACCCTGAGCTAGGA 1437 Query 1562 GGCAAACTTCCACCGCATATTTGGTCTGCGCCTAGTCTTCAGAACTTCTCTGCATCATCA 1621 || |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 1438 GGGAAACTTCCACCGCAGATTTGGTCTGCGCCTCGTCTTCAGAACTTCTCTGCATCATCC 1497 Query 1622 TGCAGTATCTCTGGTGGTCTCCCTGTGTTTGAATCCTGCAAATCTATCACTGTTATTGAA 1681 ||||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||||| Sbjct 1498 TGCAGTATCTCTGGTAGTCTCCCTGAGTTTGAATCCTGCAAAGCGATCACTGTTATTGAA 1557 Query 1682 TTGAGCAATAACAATATATCAGGGATGTTAACACCAACTGTTTCCACTTGTGGCTCTCTT 1741 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 TTGAGCAACAACAATATATCAGGGATGTTAACACCAACTGTTTCCACTTGTGGCTCTCTT 1617 Query 1742 AAGAAGATGGATTTGTCACACAATAACTTGAGAGGTGCCATACCATCTGACAAAGTGTTT 1801 ||||||||||||| ||||||||||||||||| ||| |||| |||||||||||||||||| Sbjct 1618 GAGAAGATGGATTTATCACACAATAACTTGAGTGGTTCCATCCCATCTGACAAAGTGTTT 1677 Query 1802 CAATCAATGGGGAAACATGCGTACGAGAGTAATGCAAACCTATGTGGGCTTCCTCTGAAG 1861 ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| Sbjct 1678 CAATCAATGGGGAAACATGCGTACGAGGGCAATGCAAACCTCTGTGGGCTTCCTCTGAAA 1737 Query 1862 TCATGTTCAGCTTACAGCTCAAGGAAGCTTGTGTCTGTTCTGGTAGCTTGTCTAGTCTCT 1921 |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| Sbjct 1738 TCATGTTCAGCTTACAGCTCAAAGAAGCTTGTGTCTGTTCTAGTAGCTTGTCTAGTCTCT 1797 Query 1922 ATTCTGCTAATGGTAGTTGCAGCTTTGGCATTGTACTATATTCGTCAAAGAAGTCAAGGA 1981 || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1798 ATCCTGCTAATGGTAGTTGCAGCTTTGGCATTGTACTATATACGTCAAAGAAGTCAAGGT 1857 Query 1982 CAATGGAAGATGGTGTCTTTCGCGGGACTCCCTCATTTCACAGCAGATGATGTTTTGAGG 2041 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 CAATGGAAGATGGTGTCTTTCGCGGGACTCCCTCATTTCACAGCAGATGATGTTTTGAGG 1917 Query 2042 AGCTTTGGTTCACCCGAACCTAGTGAAGCAGTTCCAGCTTCAGTGAGCAAAGCAGTTCTG 2101 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1918 AGCTTTGGTTCACCTGAACCTAGTGAAGCAGTTCCAGCTTCAGTGAGCAAAGCAGTTCTG 1977 Query 2102 CCAACAGGAATAACAGTCATAGTGAGAAAAATTGAGTTGCATGACAAGAAGAAGAGTGTT 2161 |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||| Sbjct 1978 CCAACAGGAATAACAGTCATAGTGAGAAAAATCGAATTGCAAGACAAGAAGAAGAGCGTT 2037 Query 2162 GTCCTGAACGTTTTAACGCAGATGGGGAATGCAAGACATGTAAATCTGGTCAGATTGCTC 2221 || |||||| |||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 2038 GTTCTGAACTTTTTAACGCAGATGGGGAATGCAAGACACGTAAATCTGGTGAGATTGCTG 2097 Query 2222 GGGTTTTGTTACAACAATCATCTTGTGTATGTGTTGTATGATAATAACCTGCATACCGGG 2281 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2098 GGGTTTTGTTACAACAATCATCTTGTGTATGTGTTGTATGATAATAACCTGCATACC-GG 2156 Query 2282 ACGACTCTAGCTGAGAAAATGAAGACAAAGAAGAAAGA-TTGGCAAACTAAGAAGAGGAT 2340 |||||||||||||||||||| ||||||||||||||| | ||| ||||||||||||||| Sbjct 2157 --GACTCTAGCTGAGAAAATGAGGACAAAGAAGAAAGACTGGGC-AACTAAGAAGAGGAT 2213 Query 2341 CATCACTGGTGTTGCTAAGGGACTTTGCTTTCTTCACCATGAATGTTTGCCTGCAATTCC 2400 ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| Sbjct 2214 CATCACTGGTGTTGCTAAGGGACTTTGCTTTCTTCACCATGAATGCTACCCTGCAATTCC 2273 Query 2401 TCATGGAGATGTGAAGTCGTCTAATATATTATTCGATGACGATAAGATAGAGCCCTGCTT 2460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2274 TCATGGAGATGTGAAGTCGTCTAATATATTATTCGATGACGATAAGATAGAGCCCTACTT 2333 Query 2461 GGGTGAATTTGGGTTCAAATACATGCTACATTTGAACACAGATCAGATGAACGATGTTAT 2520 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2334 GGGTGAATTTGGGTTCAAATACATGCTACATTTGAACACAGATCAGATGAACGATGTAAT 2393 Query 2521 AAGAGTGGAGAAGCAAAAGGACGTCTACAACTTTGGACAACTTATTTTGGAAATCTTAAC 2580 ||||| |||| ||||||||||| | |||||||||||| |||| ||||||||||||||||| Sbjct 2394 AAGAGCGGAGCAGCAAAAGGACATTTACAACTTTGGAGAACTCATTTTGGAAATCTTAAC 2453 Query 2581 AAATGGTAAGCTGATGAATGCCGGTGGATTGATGATACAGAACAAGCCAAAGGATGGTCT 2640 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 2454 AAATGGTAAGCTGATGAATGCCGGCGGATTGATGATACAGAACAAGCCAAAGGATGTTCT 2513 Query 2641 TCTAAGAGAAGTATACACAGAAAACGAAGTGAGTTCAAGTGATTTTAAACAAGGAGAAGT 2700 |||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| Sbjct 2514 TCTACGAGAAGTATGCACAGAAAACGAAGTGGGTTCAAGTGATTTTAAACAAGGAGAAGT 2573 Query 2701 TAAAAGAGTTGTTGAGGTCGCACTTCTCTGCATAAGAAGTGACCAGTCTGACCGTCCTTG 2760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2574 TAAAAGAGTTGTTGAGGTCGCACTTCTCTGCATAAGAAGTGACCAGTCTGACCGTCCTTG 2633 Query 2761 CATGGAAGATGCACTCAGGTTATTGTCTGAAGCAGAGAATAGGTTCAAATAG 2812 ||||||||||||||| ||||| ||||||||||||||||||||||| |||||| Sbjct 2634 CATGGAAGATGCACTGAGGTTCTTGTCTGAAGCAGAGAATAGGTTTAAATAG 2685 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 115946705780 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5