BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G51360.1

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg485389 jgi|Araly1|485389|fgenesh2_kg.5__1381__AT3G50373.1         494    2e-139


> Ahg485389 jgi|Araly1|485389|fgenesh2_kg.5__1381__AT3G50373.1
Length=354

 Score =  494 bits (267),  Expect = 2e-139
 Identities = 330/360 (92%), Gaps = 6/360 (2%)
 Strand=Plus/Plus

Query  1    ATGGCTTTTTCCGATGATCTCCCACCACCACCACGTGTGAACGATCATGTGAAGACGAGA  60
            |||||| |||| || |||||  | ||||||||| ||||||||||||||||| | | ||||
Sbjct  1    ATGGCTGTTTCAGACGATCT--C-CCACCACCATGTGTGAACGATCATGTG-A-A-GAGA  54

Query  61   AGAAACAGAAAAAGAAGAACGATCAAGACGAAGCAACTTGAAGAATTGATAAGCACCGCC  120
            |||| ||||||||||||||| || || | ||||||||||||||||||||| |||||||||
Sbjct  55   AGAAGCAGAAAAAGAAGAACAATAAAAAAGAAGCAACTTGAAGAATTGATTAGCACCGCC  114

Query  121  ACAAGAGCCGCTCATGTTGCAAGAGACAAAGGGTTTTACATAGTCTCTCCGGAAGCCATA  180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  115  GTAAGAGCCGCTCATGTTGCAAGAGACAAAGGGTTTTACATAGTCTCTCCGGAAGCCATA  174

Query  181  CAATGCGTTGAGATCCTTAGACATATGCGAACCTTACCTCTAAACGCTCGTCTTATTACC  240
            ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct  175  CAATGCGTTGAGATCCTTAGACATATGCGAAGCTTACCTCTTAACGCTCGTCTTATTACC  234

Query  241  AAAACCGACGGTTTACGCGTTCTTCTATTTCTCTCTAAGAACGGTAACCCTAAAATCAGG  300
            |||||||||||||||||  |||||||||||||||| ||||| ||||||||||||||||||
Sbjct  235  AAAACCGACGGTTTACGTATTCTTCTATTTCTCTCAAAGAATGGTAACCCTAAAATCAGG  294

Query  301  TCTGAGTCAAAGGCCGTCATTGATCACTGGAAAAGCATTCTCCATACCAAAGTTCATTAA  360
            ||||||||||| ||||||||||||||||||||  |||||||||| |  ||||||||||||
Sbjct  295  TCTGAGTCAAAAGCCGTCATTGATCACTGGAAGGGCATTCTCCAAAAAAAAGTTCATTAA  354



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12820277904


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5