BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51370.2
Length=1418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495207 jgi|Araly1|495207|fgenesh2_kg.8__1023__AT5G51370.2 2087 0.0
Ahg495209 jgi|Araly1|495209|fgenesh2_kg.8__1025__AT5G51380.1 1303 0.0
Ahg931047 jgi|Araly1|931047|scaffold_303504.1 294 1e-78
> Ahg495207 jgi|Araly1|495207|fgenesh2_kg.8__1023__AT5G51370.2
Length=1376
Score = 2087 bits (1130), Expect = 0.0
Identities = 1298/1380 (94%), Gaps = 8/1380 (1%)
Strand=Plus/Plus
Query 13 AACAAGAAATGTCTGAATTTGATAAGCATGTCCAAAACCACATCAAAAATGAGAAGCCTT 72
||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||
Sbjct 1 AACAAGAAATGTCTGAATTTGATAAGCATGTCCTAAATCACAACAAAAATGAGAAGCCTT 60
Query 73 TCAATTC-AATCAAA-CCTTCAGAAATCGATTCAACTCTCTCTTTATCCGATTCTCTTCT 130
|| | || ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TC-AGTCAAATCAAATCC-TCAGAAATCGATTCAACTCTCTCTTTATCCGATTCTCTTCT 118
Query 131 CCTCAAGATCATCGAGAAGCTTCCTGAATCACAGAGCAACGACGTCTCACTCGTCTGCAA 190
|||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 119 CCTCAAGATCCTTGAGAAGCTTCCTGAATCACAGAGCAACGATGTCTCACTTGTCTGCAA 178
Query 191 ACGCTGGTTGAATCTTCAGGGACAACGTTTACGGAGTCTAAAGCTTCTTGATTTTGATTT 250
||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 179 ACGGTGGTTGAATCTTCAGGGACGTCGTTTACGGAGTCTAAAGGTTCTTGATTTTGATTT 238
Query 251 TCTCTTGTCTGAGAGACTCACCACGAGATTCCCTAATCTCACGCATGTCGATTTGGTGAA 310
| |||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||
Sbjct 239 TGTCTTGTCTGAGAGACTTACCACGAGATTCCCCAAGCTCACGCATGTCGATTTGGTTAA 298
Query 311 CGCGTGTATGAATCCGCGGGTCAATTCCGGTATTTTGTTCTGTCACAAGTCGATTTCTTT 370
||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| | |
Sbjct 299 CGCGTGTATGAATCCGCCGGTCAATTCGGGTATTTTGCTCTGTCACAAGTCGATTTGTAT 358
Query 371 TCATTTATCTTCAGACTCGTCGAATTGGGAGTTTCTTGAGGAGAATCTATTGCACAGTGA 430
|||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 GCATTTATCTTCAGAGTCATCGAATTGGGAGTTTCTTGAGGAGAATTTATTGCACAGTGA 418
Query 431 CGTAATTGATAGAGGGCTTAG-GATATTAAGCAGAGAGAGTTTTGATTTGCTTAACCTTA 489
||||||||||||||||||||| | |||||||||||| || || |||||||||||| |||
Sbjct 419 CGTAATTGATAGAGGGCTTAGCG-TATTAAGCAGAGGGAATTGTGATTTGCTTAAACTTG 477
Query 490 AAGTGATTAACGCTTCTGAATTGGGATTATTGAGTTTAGCTGGAGACTGCTCTGATTTGC 549
||||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||
Sbjct 478 TAGTGATTAACGCTACTGAATTGGGATTACTGAGTTTAGCTGAAGACTGTTCTGATTTGC 537
Query 550 AAGAGTTAGAATTGCATAAGTGTAATGATAATCTCTTGCATGGCATTGCTGCGTGTAAGA 609
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 538 AAGAATTAGAATTGCATAAGTGTAATGATAATCTCTTGCATGGTATTGCTGCGTGTAAGA 597
Query 610 ATCTGA-AGGGATTGAGATTGGTAGGAAGCGTAGACGGATTGTATAGTTCATCTGTGTCG 668
|||| | || | ||||| || || ||||||||||||||||||||||||||||| ||||||
Sbjct 598 ATCTTAGAGCG-TTGAGGTTAGTTGGAAGCGTAGACGGATTGTATAGTTCATCGGTGTCG 656
Query 669 GATATAGGATTAACATTCTTAGCACAAGGATGTAGGAGTTTGGTGAAGCTTGAGCTTAGT 728
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 657 GATATAGGGTTAACGTTCTTAGCACAAGGGTGTAGGAGTTTGGTGAAGCTTGAGCTTAGT 716
Query 729 GGTTGTGAAGGTAGCTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GGTTGTGAAGGTAGCTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAG 776
Query 789 GAGTTGAGTATTTGTGACCATAGAATGGACGATGGTTGGATCGCTGCGCTTTCGTATTTT 848
||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 777 GAGCTGAGTATTTGTGACCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTT 836
Query 849 GAGAGTTTGAAGATATTGAGGATTTCGTCTTGTAGAAAGATAGACGCTAGTCCTGGACCG 908
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 837 GAGAGTTTGAAGATATTGAGGATTTCGTCGTGTAGAAAGATAGACGCTAGTCCTGGACCG 896
Query 909 GAAAAGTTGTTGCGGTCTTGTCCTGCTATGGAGAGTTTGCAGCTCAAGAGGTGTTGTTTG 968
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 897 GAAAAGTTGTTGCAGTCTTGTCCAGCTATGGAGAGTTTGCAACTCAAGAGGTGTTGTTTG 956
Query 969 AATGACAAGGAGGGGATAAAAGCTTTGTTTAAAGTGTGTGATGGAGCAACAGAGGTTAAT 1028
||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |
Sbjct 957 AATGACAAGGAGGGGATGAGAGCGTTGTTTAAAGTGTGTGATGGAGCAACAGAGGTTAGT 1016
Query 1029 ATTCAGGATTGTTGGGGACTGAGTGATGATTGTTTCAGTTTGGCTAAAGCTTTCAGGAGG 1088
||||||||||| |||||| |||||||||||| |||||| |||||||||||||||||||||
Sbjct 1017 ATTCAGGATTGCTGGGGATTGAGTGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGG 1076
Query 1089 GTGAGGTTTCTGTCTTTGGAAGGATGCTCAGTTTTAACATCAGGAGGTTTAGAGTCGGTG 1148
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1077 GTGAGGTTTCTGTCTTTGGAAGGATGCTCAGTCTTAACATCAGGCGGTTTAGAGTCGGTG 1136
Query 1149 ATTTTACATTGGGAAGAGCTTGAGAGTATGAGAGTAGTGTCATGTAAGAGCATAAAAGAC 1208
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1137 ATTTTACACTGGGAAGAGCTTGAGAGCATGAGAGTAGTGTCATGTAAAAGCATAAAAGAC 1196
Query 1209 AGCGAAATTTCACCAGCGCTCTCGTCTTTGTTCTCACTTCTCAAAGAACTAACTTGGAGA 1268
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGCGAAATTTCACCCGCGCTCTCGTCTTTGTTCTCACTTCTCAAAGAACTAACTTGGAGA 1256
Query 1269 CCAGACACTAGGTCTCATCTCTCGTCGAGTCTTGAAGGTGCCGGGATTGGAATTAGAGGC 1328
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1257 CCAGACACTAGGTCTCATCTCTCTTCGAGTCTTGAAGGTGCCGGGATTGGAAAGAGAGGC 1316
Query 1329 AGCAAATTCTTCAAGAAGAGTGTTTTACATTGAACATATGTTGTGTAAGTGCAAACTCTT 1388
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct 1317 AGCAAATTCTTCAAGAAGAGTGTTCTACATTGAACATATGTTGTGTAAGCGCAAACACTT 1376
> Ahg495209 jgi|Araly1|495209|fgenesh2_kg.8__1025__AT5G51380.1
Length=1704
Score = 1303 bits (705), Expect = 0.0
Identities = 1111/1306 (85%), Gaps = 32/1306 (2%)
Strand=Plus/Plus
Query 97 TCGATTC-AACTCTCTCTTTATCCGATTCTCTTCTCCTCAAGATCATCGAGAAGCTTCCT 155
|||| || ||| || || || || |||||||| || || |||||| | ||||||||||||
Sbjct 256 TCGA-TCGAACACTTTCCTTGTCAGATTCTCTCCTTCTTAAGATCCTTGAGAAGCTTCCT 314
Query 156 GAATCACAGAGCAACGACGTCTCACTCGTCTGCAAACGCTGGTTGAATCTTCAGGGACAA 215
||||| |||| |||||| || ||||||| || ||||| |||||| ||| || ||||
Sbjct 315 GAATCTCAGAACAACGATGTGGCACTCGTGTGTAAACGGTGGTTGTGTCTACAAGGACGG 374
Query 216 CGTT-TACGGAGTCTAAAGCTTCTTGATTTTGATTTTCTCT-TGTCTGAGAGACTCACCA 273
|||| | |||| | ||| || |||||| |||||| | | |||||| ||| ||
Sbjct 375 CGTTGGA-GGAGAATGAAGGTTTTTGATTGGGATTTTGT-TATGTCTGGGAGGCTTGTTT 432
Query 274 CGAGATTCCCTAATCTCACGCATGTCGATTTGGTGAACGCGTGTATGAATCCG-CG-GGT 331
|||| || ||||| || ||| |||| |||||||| ||||||||| |||||||| | ||
Sbjct 433 CGAGGTTTCCTAAGCTTACGAATGTTGATTTGGTTAACGCGTGTTTGAATCCGTTGAGG- 491
Query 332 CAATTCCGGTATTTTGTTCTGTCACAAGTCGATTTCTTTTCATTTATCTTCAGA--C-TC 388
||||| || |||||| | ||||| ||||||||||| |||||| |||| | || | ||
Sbjct 492 -AATTCAGGGATTTTGCTATGTCATAAGTCGATTTCGTTTCATATATCGACCGATTCGTC 550
Query 389 GTCGAATTGGGAGTTTCTTGAGGAGAATCTATTGCACAGTGACGTAATTGATAGAGGGCT 448
|||||||||||| ||| ||||||||||||| ||| | | ||| | ||||| |||||||
Sbjct 551 GTCGAATTGGGATTTTGTTGAGGAGAATCTGTTGGATAATGAAATGGTTGATCGAGGGCT 610
Query 449 TAGGATATTAAGCAGAGAGAGTTTTGATTTGCTTAACCTTAAAGTGATTAACGCTTCTGA 508
|||| ||||| | |||| |||||||||||||||||| ||| ||||||||| ||| ||||
Sbjct 611 TAGGGTATTAGGAAGAGGGAGTTTTGATTTGCTTAAGCTTGTAGTGATTAATGCTACTGA 670
Query 509 ATTGGGATTATTGAGTTTAGCTGGA-GACTGCTCTGATTTGCAAGAGTTAGAATTGCATA 567
|||||||||| ||||||||||| || ||||| ||||||||||| |||||||| |||||||
Sbjct 671 ATTGGGATTACTGAGTTTAGCT-GAGGACTGTTCTGATTTGCAGGAGTTAGAGTTGCATA 729
Query 568 AGTGTAATGATAATCTCTTGCATGGCATTGCTGCGTGTAAGAATCTGAAGGGATTGAGAT 627
|||||| |||||||||||||| ||| |||||||| ||| ||||||||| ||| |||||||
Sbjct 730 AGTGTAGTGATAATCTCTTGCGTGGTATTGCTGCTTGTGAGAATCTGAGGGGTTTGAGAT 789
Query 628 TGGTAGGAAGCGTAGACGGATTGTATAGTTCATCTGTGTCGGATATAGGATTAAC-ATTC 686
|||| | ||| || |||||||||||||||||||| || ||||||||||| || || |||
Sbjct 790 TGGTTGCAAGTGTTGACGGATTGTATAGTTCATCGGTTTCGGATATAGGTTTGACAATT- 848
Query 687 TTAGCACAAGGATGTAGGAGTTTGGTGAAGCTTGAGCTTAGTGGTTGTGAAGGTAGCTTT 746
||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 849 TTAGCACAAGGGTGTAAGAGATTGGTGAAGCTGGAGCTTAGTGGTTGTGAAGGTAGTTTT 908
Query 747 GATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGTTGAGTATTTGTGAC 806
||||||||||||||||||||||||||||||||| ||||||| ||| ||| ||||||||||
Sbjct 909 GATGGGATTAAAGCAATTGGGCAATGTTGTGAAATGCTTGATGAGCTGACTATTTGTGAC 968
Query 807 CATAGAATGGACGATGGTTGGATCGCTGCGCTTTCGTATTTTGAGAGTTTGAAGATATTG 866
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||| ||||
Sbjct 969 CATAGAATGGATGATGGTTGGATTGCGGCGCTTTCGTACTTTGAGAGTTTGAAGACATTG 1028
Query 867 AGGATTTCGTCTTGTAGAAAGATAGACGCTAGTCCTGGACCGGAAAAGTTGTTGCGG-TC 925
|| ||||| ||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 1029 AGAATTTCTTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGAAAAGTTGCTG-GGATC 1087
Query 926 TTGTCCTGCTATGGAGAGTTTGCAGCTCAAGAGGTGTTGTTTGAATGACAAGGAGGGGAT 985
|||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1088 TTGTCCAGCTCTGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGACAAGCAGGGGAT 1147
Query 986 AAAAGCTTTGTTTAAAGTGTGTGATGGAGCAAC-AGAGGTTAATATTCAGGATTGTTGGG 1044
| ||| |||||||| ||||||||||||| ||| | ||||||||||||| ||||||||||
Sbjct 1148 GAGAGCGTTGTTTAAGGTGTGTGATGGAGTAACTA-AGGTTAATATTCATGATTGTTGGG 1206
Query 1045 GACTG-AGTGATGATTGTTTCAGTTTGGCTAAAGCTTTCAGGAGGGTGAGGTTTCTGTCT 1103
|| || | |||||||| |||||| |||||||||||||||||||||||| ||||| | |||
Sbjct 1207 GATTGGA-TGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGGTTTTTATCT 1265
Query 1104 TTGGAAGGATGCTCAGTTTTAACATCAGGAGGTTTAGAGTCGGTGATTTTACATTGGGAA 1163
||||||||||||||||| ||||| || | ||||||||||| || ||| |||| ||||||
Sbjct 1266 TTGGAAGGATGCTCAGTCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTACACTGGGAA 1325
Query 1164 GAGCTTGAGAGTATGAGAGTAGTGTCATGTAAGAGCATAAAAGACAGCGAAATTTCACCA 1223
||||||||||| ||||||||||| |||||||||| |||||||||||| ||||||||| |
Sbjct 1326 GAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAACATAAAAGACAGTGAAATTTCAGCG 1385
Query 1224 GCGCTCTCGTCTTTGTTCTCACTTCTCAAAGAACTAACTTGGAGACCAGACACTAGGTCT 1283
|| ||||||||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1386 GCACTCTCGTCTCTGTTCTCCCTTCTCAAAGAACTAACGTGGAGACCGGACACAAGGTCT 1445
Query 1284 CATCTCTCGTCGAGTCTTGAAGGTGCCGGGA-TTGGAATTAGAGGCAGCAAATTCTTCAA 1342
|||||||| |||||||| |||||||| |||| |||||| ||||| ||||||||||||||
Sbjct 1446 CATCTCTCATCGAGTCTAGAAGGTGC-GGGAATTGGAAAGAGAGGTAGCAAATTCTTCAA 1504
Query 1343 GAAGAG-TGTT-TTACA-T-T-GAACATATGTTGTGTAAGTGCAAA 1383
||||| || | || || | | ||||||||||| ||||| || |||
Sbjct 1505 AAAGAGATGATGTT-CAATGTAGAACATATGTTTTGTAA-TGAAAA 1548
> Ahg931047 jgi|Araly1|931047|scaffold_303504.1
Length=534
Score = 294 bits (159), Expect = 1e-78
Identities = 219/246 (89%), Gaps = 11/246 (4%)
Strand=Plus/Plus
Query 740 TAGCTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGTTGAGTAT 799
|||||||||||||||||||||||||||| | || || ||||||| |||| |||
Sbjct 68 TAGCTTTGATGGGATTAAAGCAATTGGG--A-------AA-TG-TTGAGGATTTGACTAT 116
Query 800 TTGTGACCATAGAATGGACGATGGTTGGATCGCTGCGCTTTCGTATTTTGAGAGTTTGAA 859
|| ||| ||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||
Sbjct 117 TTATGATCATAGAATGGATGATGGTTGGATAGCTGCACTTTCGTATATTGAGAGTTTGAA 176
Query 860 GATATTGAGGATTTCGTCTTGTAGAAAGATAGACGCTAGTCCTGGACCGGAAAAGTTGTT 919
|||||||| |||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 177 GATATTGAAGATTTCTTCGCGTAGAAGGATAGACGCTAGTCCTGGACCGGAAAAGTTGTT 236
Query 920 GCGGTCTTGTCCTGCTATGGAGAGTTTGCAGCTCAAGAGGTGTTGTTTGAATGACAAGGA 979
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 237 GCGGTCTTGTCCAGCTATGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGATAAGGA 296
Query 980 GGGGAT 985
||||||
Sbjct 297 GGGGAT 302
Score = 268 bits (145), Expect = 6e-71
Identities = 172/185 (93%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 1038 TGTTGGGGACTGAGTGATGATTGTTTCAGTTTGGCTAAAGCTTTCAGGAGGGTGAGGTTT 1097
||||||||||||| || ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 310 TGTTGGGGACTGAATGGTGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGAGGTTT 369
Query 1098 CTGTCTTTGGAAGG-ATGCTCAGTTTTAACATCAGGAGGTTTAGAGTCGGTGATTTTACA 1156
||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 370 CTGTCTTTG-AAGGGATGCTCAGTCTTAACATCAGGCGGTTTAGAGTCGGTGATTTTACA 428
Query 1157 TTGGGAAGAGCTTGAGAGTATGAGAGTAGTGTCATGTAAGAGCATAAAAGACAGCGAAAT 1216
|||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 429 CTGGGGAGAGCTTGAGAGCATGAGAGTAGTGTCATGTAAAAGCATAAAAGACAGCGAAAT 488
Query 1217 TTCAC 1221
||||
Sbjct 489 ATCAC 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53021621040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5