BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51380.1 Length=1719 Score E Sequences producing significant alignments: (Bits) Value Ahg495209 jgi|Araly1|495209|fgenesh2_kg.8__1025__AT5G51380.1 2488 0.0 Ahg495207 jgi|Araly1|495207|fgenesh2_kg.8__1023__AT5G51370.2 1424 0.0 Ahg931047 jgi|Araly1|931047|scaffold_303504.1 259 4e-68 > Ahg495209 jgi|Araly1|495209|fgenesh2_kg.8__1025__AT5G51380.1 Length=1704 Score = 2488 bits (1347), Expect = 0.0 Identities = 1594/1712 (93%), Gaps = 21/1712 (1%) Strand=Plus/Plus Query 1 GTTCGTAATCCGCCGCTAAATCAAACCAGCGAGAGAGATAG-----ATCCAACGTGAAGA 55 ||| ||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct 1 GTTTGTAATCCGCCGCTAAATCAAACCAGAGAGAGAGAGAGATCCAATCCAACGTGAAGA 60 Query 56 AGAAATCGAAAACGATGACGTTTAGGGAGAAAATGCCGACGAGTCCTAAATCGCCTCTGA 115 ||||||||||||||||| |||||| |||||| | ||||||||||| ||||||||||||| Sbjct 61 AGAAATCGAAAACGATGTCGTTTATGGAGAAGTTACCGACGAGTCCCAAATCGCCTCTGA 120 Query 116 GAAGACGACGTTCGAGCTGGACCGGTACATGGTTAAACCATCAGACGACGTCGTTTAAGC 175 ||||||||||||| |||||||||||| ||||||||||||| | ||||||||||| |||| Sbjct 121 GAAGACGACGTTCAAGCTGGACCGGTCCATGGTTAAACCACCCCACGACGTCGTTCAAGC 180 Query 176 AAGCAGTCTCCGCCGTTATTCAAGCTCAATCACCAAGATCCAGGTTTAAATCCCTATCTT 235 ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| || | Sbjct 181 AAGTAGTCTCCGCCGTTATCCAAGCTCAATCACCAAGATCCAGGTTCAAATCCCTCTCCT 240 Query 236 CTGATTTCTCCGACGTCGATCGAACTCTTTCGTTGTCAGATTCTCTTCTTCTCAAGATCC 295 ||||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||||||| Sbjct 241 CTGATTTCTCCGACGTCGATCGAACACTTTCCTTGTCAGATTCTCTCCTTCTTAAGATCC 300 Query 296 TTGAGAAGCTTCCTGAATCTCAGAACGAA-GATGTTTCACTCGTGTGTAAACGGTGGTTG 354 |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| Sbjct 301 TTGAGAAGCTTCCTGAATCTCAGAAC-AACGATGTGGCACTCGTGTGTAAACGGTGGTTG 359 Query 355 AGTGTTCAGGGACGGCGTT-TACGGAGTATGAAGGTTTTTGATTGGGAATTT-TTATTGT 412 || | || |||||||||| | |||| |||||||||||||||||||| ||| ||| ||| Sbjct 360 TGTCTACAAGGACGGCGTTGGA-GGAGAATGAAGGTTTTTGATTGGGATTTTGTTA-TGT 417 Query 413 CTGGGAGGCTTGTTTCGAGGTTTCCTAAGCTTACGAGTGTTGATTTGGTTAACGCGTGTT 472 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 418 CTGGGAGGCTTGTTTCGAGGTTTCCTAAGCTTACGAATGTTGATTTGGTTAACGCGTGTT 477 Query 473 TCAATCCGTCGAGCAATTCAGGGATTTTGCTATGTCATACGTCGATTTCGTTTCATGTAT 532 | ||||||| ||| ||||||||||||||||||||||||| |||||||||||||||| ||| Sbjct 478 TGAATCCGTTGAGGAATTCAGGGATTTTGCTATGTCATAAGTCGATTTCGTTTCATATAT 537 Query 533 CAACCGATTCGTCGTTGAATTTGAATTTTGTTGAGGAGAGTCTGTTGGATAATGAAATGG 592 | ||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||| Sbjct 538 CGACCGATTCGTCGTCGAATTGGGATTTTGTTGAGGAGAATCTGTTGGATAATGAAATGG 597 Query 593 TTGATAAAGGGCTTAGGGTTTTAGGAAGAGGGAGTTTTGATTTGATTAAGCTTGTAGTGA 652 ||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 598 TTGATCGAGGGCTTAGGGTATTAGGAAGAGGGAGTTTTGATTTGCTTAAGCTTGTAGTGA 657 Query 653 TTAATGCTACTGAATTGGGATTGCTGAGTTTAGCTGAGGATTGTTCGGATTTGCAGGAGT 712 |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| Sbjct 658 TTAATGCTACTGAATTGGGATTACTGAGTTTAGCTGAGGACTGTTCTGATTTGCAGGAGT 717 Query 713 TAGAGTTGCATAAGTGTAGCGATAATCTCTTGCGTGGTATTGCTGCTTGTGAGAATCTGA 772 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 718 TAGAGTTGCATAAGTGTAGTGATAATCTCTTGCGTGGTATTGCTGCTTGTGAGAATCTGA 777 Query 773 GGGGATTGAGATTGGTTGGAAGTGTTGATGGATTGTATAGTTCATCGGTTTCTGATATTG 832 |||| ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| | Sbjct 778 GGGGTTTGAGATTGGTTGCAAGTGTTGACGGATTGTATAGTTCATCGGTTTCGGATATAG 837 Query 833 GTTTGACGATTTTAGCACAAGGGTGTAAGAGATTGGTGAAGCTTGAGCTTAGTGGTTGTG 892 ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 838 GTTTGACAATTTTAGCACAAGGGTGTAAGAGATTGGTGAAGCTGGAGCTTAGTGGTTGTG 897 Query 893 AAGGTAGTTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGCTGA 952 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 898 AAGGTAGTTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAATGCTTGATGAGCTGA 957 Query 953 GTATTTGTGATCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTTGAGAGTT 1012 ||||||||| ||||||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 958 CTATTTGTGACCATAGAATGGATGATGGTTGGATTGCGGCGCTTTCGTACTTTGAGAGTT 1017 Query 1013 TGAAGACTTTGTTG-ATTTCGTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGGAAAG 1071 ||||||| ||| | ||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1018 TGAAGACATTG-AGAATTTCTTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGAAAAG 1076 Query 1072 TTGCTGGGATCTTGTCCAGCTCTGGAGAGTTTGCAACTCAGGAGGTGTTGTTTGAATGAC 1131 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1077 TTGCTGGGATCTTGTCCAGCTCTGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGAC 1136 Query 1132 AAGGAGGGGATGAGAGCGTTGTTTAAGGTGTGTGATGGAGTAACTAAGGTTAATATTCAG 1191 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 AAGCAGGGGATGAGAGCGTTGTTTAAGGTGTGTGATGGAGTAACTAAGGTTAATATTCAT 1196 Query 1192 GATTGTTGGGGATTGGATGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGG 1251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1197 GATTGTTGGGGATTGGATGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGG 1256 Query 1252 TTTTTATCTTTGGAAGGATGCTCAATCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTA 1311 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1257 TTTTTATCTTTGGAAGGATGCTCAGTCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTA 1316 Query 1312 CACTGGGAAGAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAACATAAAAGACAGCGAA 1371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1317 CACTGGGAAGAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAACATAAAAGACAGTGAA 1376 Query 1372 ATTTCAGCCGCACTCTCGTCTTTGTTCTCCCTTCTCAAAGAACTAACGTGGAGACCGGAC 1431 |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1377 ATTTCAGCGGCACTCTCGTCTCTGTTCTCCCTTCTCAAAGAACTAACGTGGAGACCGGAC 1436 Query 1432 ACAAGGTCTCATCTCTCATCCAGTCTTGAAGGTACCGGAATTGGTAAGAGAGGTAGCAAA 1491 |||||||||||||||||||| ||||| |||||| | |||||||| ||||||||||||||| Sbjct 1437 ACAAGGTCTCATCTCTCATCGAGTCTAGAAGGTGCGGGAATTGGAAAGAGAGGTAGCAAA 1496 Query 1492 TTCTTCAAGAAGAGATGATGTTCTACAT-T-GAACATAATGTTATATAATGTAA-TGTAA 1548 |||||||| |||||||||||||| | || | ||||||| |||| | ||||| || |||| Sbjct 1497 TTCTTCAAAAAGAGATGATGTTC-A-ATGTAGAACATA-TGTTTTGTAATGAAAATGTAG 1553 Query 1549 GTCCTCGCATCTCATGTGCCCTGAAAATTCTTATACACACAAACTCTTCTTATTGTACGG 1608 || ||||||| |||||||||||||||||||||||| ||||||||||| ||| || | ||| Sbjct 1554 GTGCTCGCATTTCATGTGCCCTGAAAATTCTTATATACACAAACTCT-CTTCTTCTCCGG 1612 Query 1609 GCATTATTACTCTGTTGTAAAATCTGCCAAATTTGTAGTCAA-TGTTCAAACCTCTTATG 1667 |||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| Sbjct 1613 GCATTATTACTCTGTTGTAAAATCTGCCAAATTTGTAGTCAAATGTTCAAAACGCTTATG 1672 Query 1668 TACTGCAATGTTCTATTGTTATGTATAATAAT 1699 || ||||||||||| ||||||||||||||||| Sbjct 1673 TATTGCAATGTTCTGTTGTTATGTATAATAAT 1704 > Ahg495207 jgi|Araly1|495207|fgenesh2_kg.8__1023__AT5G51370.2 Length=1376 Score = 1424 bits (771), Expect = 0.0 Identities = 1127/1296 (87%), Gaps = 36/1296 (3%) Strand=Plus/Plus Query 251 TCGA-TCGAACTCTTTCGTTGTCAGATTCTCTTCTTCTCAAGATCCTTGAGAAGCTTCCT 309 |||| || |||||| || || || ||||||||||| |||||||||||||||||||||||| Sbjct 85 TCGATTC-AACTCTCTCTTTATCCGATTCTCTTCTCCTCAAGATCCTTGAGAAGCTTCCT 143 Query 310 GAATCTCAGAACGAA-GATGTTTCACTCGTGTGTAAACGGTGGTTGAGTGTTCAGGGACG 368 ||||| |||| | || ||||| ||||| || || ||||||||||||| | |||||||||| Sbjct 144 GAATCACAGAGC-AACGATGTCTCACTTGTCTGCAAACGGTGGTTGAATCTTCAGGGACG 202 Query 369 GCGTTTACGGAGTATGAAGGTTTTTGATTGGGAATTTT-TATTGTCTGGGAGGCTTGTTT 427 |||||||||||| | |||||| |||||| | ||||| | ||||||| ||| ||| Sbjct 203 TCGTTTACGGAGTCTAAAGGTTCTTGATTTTG-ATTTTGTCTTGTCTGAGAGACTTACCA 261 Query 428 CGAGGTTTCCTAAGCTTACG-AGTGTTGATTTGGTTAACGCGTGTTTCAATCCGTCGAG- 485 |||| || || ||||| ||| | ||| |||||||||||||||||| | |||||| || | Sbjct 262 CGAGATTCCCCAAGCTCACGCA-TGTCGATTTGGTTAACGCGTGTATGAATCCGCCG-GT 319 Query 486 CAATTCAGGG-ATTTTGCTATGTCATACGTCGATTTCGT-TTCATGTATCAACCGATTCG 543 |||||| ||| |||||||| ||||| | |||||||| || | ||| |||| | || | Sbjct 320 CAATTC-GGGTATTTTGCTCTGTCACAAGTCGATTT-GTATGCATTTATCTTCAGA---G 374 Query 544 TCGTTGAATTTGAATTTTGTTGAGGAGAGTCTGTTGGATAATGAAATGGTTGATAAAGGG 603 || | ||||| | | ||| ||||||||| | | ||| | | ||| | |||||| |||| Sbjct 375 TCATCGAATTGGGAGTTTCTTGAGGAGAATTTATTGCACAGTGACGTAATTGATAGAGGG 434 Query 604 CTTAGGGTTTTAGGAAGAGGGAGTTTTGATTTGATTAAGCTTGTAGTGATTAATGCTACT 663 ||||| || ||| | ||||||| || ||||||| |||| |||||||||||||| |||||| Sbjct 435 CTTAGCGTATTAAGCAGAGGGAATTGTGATTTGCTTAAACTTGTAGTGATTAACGCTACT 494 Query 664 GAATTGGGATTGCTGAGTTTAGCTGAGGATTGTTCGGATTTGCAGGAGTTAGAGTTGCAT 723 ||||||||||| |||||||||||||| || ||||| |||||||| || ||||| |||||| Sbjct 495 GAATTGGGATTACTGAGTTTAGCTGAAGACTGTTCTGATTTGCAAGAATTAGAATTGCAT 554 Query 724 AAGTGTAGCGATAATCTCTTGCGTGGTATTGCTGCTTGTGAGAATCTGAG-GGGATTGAG 782 ||||||| ||||||||||||| |||||||||||| ||| ||||||| || | | ||||| Sbjct 555 AAGTGTAATGATAATCTCTTGCATGGTATTGCTGCGTGTAAGAATCTTAGAGCG-TTGAG 613 Query 783 ATTGGTTGGAAGTGTTGATGGATTGTATAGTTCATCGGTTTCTGATATTGGTTTGACGAT 842 || |||||||| || || |||||||||||||||||||| || ||||| || || ||| | Sbjct 614 GTTAGTTGGAAGCGTAGACGGATTGTATAGTTCATCGGTGTCGGATATAGGGTTAACG-T 672 Query 843 T-TTAGCACAAGGGTGTAAGAGATTGGTGAAGCTTGAGCTTAGTGGTTGTGAAGGTAGTT 901 | |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | Sbjct 673 TCTTAGCACAAGGGTGTAGGAGTTTGGTGAAGCTTGAGCTTAGTGGTTGTGAAGGTAGCT 732 Query 902 TTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGCTGAGTATTTGTG 961 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 TTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGCTGAGTATTTGTG 792 Query 962 ATCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTTGAGAGTTTGAAGACT- 1020 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 793 ACCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTTGAGAGTTTGAAGA-TA 851 Query 1021 TTGTTGATTTCGTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGGAAAGTTGCTGG-G 1079 ||| ||||||||| |||||||||||||| ||||||||||||||| ||||||| || | Sbjct 852 TTGAGGATTTCGTCGTGTAGAAAGATAGACGCTAGTCCTGGACCGGAAAAGTTGTTGCAG 911 Query 1080 ATCTTGTCCAGCTCTGGAGAGTTTGCAACTCAGGAGGTGTTGTTTGAATGACAAGGAGGG 1139 |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 912 -TCTTGTCCAGCTATGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGACAAGGAGGG 970 Query 1140 GATGAGAGCGTTGTTTAAGGTGTGTGATGGAGTAACTA-AGGTTAATATTCAGGATTGTT 1198 |||||||||||||||||| ||||||||||||| ||| | |||||| |||||||||||| | Sbjct 971 GATGAGAGCGTTGTTTAAAGTGTGTGATGGAGCAAC-AGAGGTTAGTATTCAGGATTGCT 1029 Query 1199 GGGGATTG-GATGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGGTTTTTA 1257 |||||||| | |||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1030 GGGGATTGAG-TGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGAGGTTTCTG 1088 Query 1258 TCTTTGGAAGGATGCTCAATCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTACACTGG 1317 |||||||||||||||||| || ||||| || ||||||||||||| || ||| |||||||| Sbjct 1089 TCTTTGGAAGGATGCTCAGTCTTAACATCAGGCGGTTTAGAGTCGGTGATTTTACACTGG 1148 Query 1318 GAAGAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAA-CATAAAAGACAGCGAAATTTC 1376 |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 1149 GAAGAGCTTGAGAGCATGAGAGTAGTGTCATGTAA-AAGCATAAAAGACAGCGAAATTTC 1207 Query 1377 AGCCGCACTCTCGTCTTTGTTCTCCCTTCTCAAAGAACTAACGTGGAGACCGGACACAAG 1436 | |||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || Sbjct 1208 ACCCGCGCTCTCGTCTTTGTTCTCACTTCTCAAAGAACTAACTTGGAGACCAGACACTAG 1267 Query 1437 GTCTCATCTCTCATCCAGTCTTGAAGGTACCGGAATTGGTAAGAGAGGTAGCAAATTCTT 1496 |||||||||||| || |||||||||||| |||| ||||| |||||||| ||||||||||| Sbjct 1268 GTCTCATCTCTCTTCGAGTCTTGAAGGTGCCGGGATTGGAAAGAGAGGCAGCAAATTCTT 1327 Query 1497 CAAGAAGAGATGATGTTCTACATTGAACATAATGTT 1532 ||||||||| || | | |||||||||||||| |||| Sbjct 1328 CAAGAAGAG-TG-T-T-CTACATTGAACATA-TGTT 1358 > Ahg931047 jgi|Araly1|931047|scaffold_303504.1 Length=534 Score = 259 bits (140), Expect = 4e-68 Identities = 218/253 (86%), Gaps = 15/253 (6%) Strand=Plus/Plus Query 897 TAGTTTTGATGGGATTAAAGCAATTGGGCAATGTTGTGAAGTGCTTGAGGAGCTGAGTAT 956 ||| |||||||||||||||||||||||| | || || ||||||| ||| ||| Sbjct 68 TAGCTTTGATGGGATTAAAGCAATTGGG--A-------AA-TG-TTGAGGATTTGACTAT 116 Query 957 TTGTGATCATAGAATGGATGATGGTTGGATAGCTGCGCTTTCGTATTTTGAGAGTTTGAA 1016 || ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 117 TTATGATCATAGAATGGATGATGGTTGGATAGCTGCACTTTCGTATATTGAGAGTTTGAA 176 Query 1017 GACT-TTGTTGATTTCGTCTTGTAGAAAGATAGATTCTAGTCCTGGACCGGGAAAGTTGC 1075 || | ||| |||||| || |||||| |||||| ||||||||||||||| ||||||| Sbjct 177 GA-TATTGAAGATTTCTTCGCGTAGAAGGATAGACGCTAGTCCTGGACCGGAAAAGTTGT 235 Query 1076 TG-GGATCTTGTCCAGCTCTGGAGAGTTTGCAACTCAGGAGGTGTTGTTTGAATGACAAG 1134 || || |||||||||||| |||||||||||||||||| |||||||||||||||||| ||| Sbjct 236 TGCGG-TCTTGTCCAGCTATGGAGAGTTTGCAACTCAAGAGGTGTTGTTTGAATGATAAG 294 Query 1135 GAGGGGATGAGAG 1147 ||||||||||||| Sbjct 295 GAGGGGATGAGAG 307 Score = 228 bits (123), Expect = 1e-58 Identities = 165/185 (89%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 1195 TGTTGGGGATTGGATGATGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGCGGTTT 1254 ||||||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 310 TGTTGGGGACTGAATGGTGATTCTTTCAGCTTGGCTAAAGCTTTCAGGAGGGTGAGGTTT 369 Query 1255 TTATCTTTGGAAGG-ATGCTCAATCCTAACAACAAGCGGTTTAGAGTCAGTAATTCTACA 1313 | |||||| |||| ||||||| || ||||| || ||||||||||||| || ||| |||| Sbjct 370 CTGTCTTTG-AAGGGATGCTCAGTCTTAACATCAGGCGGTTTAGAGTCGGTGATTTTACA 428 Query 1314 CTGGGAAGAGCTTGAGAGCATGAGAGTAGTATCATGTAAGAA-CATAAAAGACAGCGAAA 1372 ||||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct 429 CTGGGGAGAGCTTGAGAGCATGAGAGTAGTGTCATGTAA-AAGCATAAAAGACAGCGAAA 487 Query 1373 TTTCA 1377 | ||| Sbjct 488 TATCA 492 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64486784785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5