BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G51390.1

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495210 jgi|Araly1|495210|fgenesh2_kg.8__1026__AT5G51390.1         741    0.0  


> Ahg495210 jgi|Araly1|495210|fgenesh2_kg.8__1026__AT5G51390.1
Length=474

 Score =  741 bits (401),  Expect = 0.0
 Identities = 439/457 (96%), Gaps = 3/457 (1%)
 Strand=Plus/Plus

Query  1    AAGTAACGATAACTACGAAATTAGGTATACAAGTCTCTGCCCTACGTTTTATTGATTAGA  60
            ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  1    AAGTAACGATAACTACGAAATTAGGTACACAAGTCTCTGCCCTACGTTTTA-TGATTAGA  59

Query  61   TGATACAAAGGACCACTTCATCCCCAGAGAAGATGATCGGAGGAAAGATTCCTGAATCAC  120
            |||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||
Sbjct  60   TGATACAAAGGACCACTTCAACCCCAGAGAAGATGATCGGAGGAAAGATTCCGGAGTCAC  119

Query  121  GAGTTTCTGCATCACTACCATG-TTTTCAGGCGAGTGCTGAAGGGTTAAGTCGACGGAAG  179
            |||||||||||||||| ||||| ||||| |||||||| |||||||||| || ||||||||
Sbjct  120  GAGTTTCTGCATCACTGCCATGTTTTTC-GGCGAGTGTTGAAGGGTTACGTAGACGGAAG  178

Query  180  AGCTTAGCTGAAGCCGGGAAGAGAGATATCTTCTATGGAGAAGATGACGTGGCAGACTTG  239
            || ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  179  AGTTTAGCTGAAGCGGGGAAGAGAGATATCTTCTACGGAGAAGATGACGTGGCAGATTTG  238

Query  240  ATGTTTAGAGAAGAGGAAGTGGAACAAGACACGGTCATGAGAGCTTATAGAAGTAACGAA  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  239  ATGTTTAGAGAAGAGGAAGTGGAACAAGACACGGTCATGAGAGCTTATAGAAGTAACGAG  298

Query  300  GCTATGAAATCTATCCAAGATACGAGACGAAGACAAAGAAGGTTCTTTTGTTTTGAATGT  359
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  GCTATGAAATCGATCCAAGATACGAGACGAAGACAAAGAAGGTTCTTTTGTTTTGAATGT  358

Query  360  TTTGACTTTCTCAAACtttttttCTCTAGAGATCGAAACTAATAACCCTAACAACAAACA  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  359  TTTGACTTTCTCAAACTTTTTTTCTCTAGAGATCGAAACTAATAACCCTAACAACAAACA  418

Query  420  ATGTTTCTTGTATTTCTTTATCTTGTAAATTCTTTAG  456
            ||||||||||||| |||||||||||||||||||||||
Sbjct  419  ATGTTTCTTGTATCTCTTTATCTTGTAAATTCTTTAG  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18085749186


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5