BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51400.1
Length=995
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495211 jgi|Araly1|495211|fgenesh2_kg.8__1027__AT5G51400.1 1376 0.0
> Ahg495211 jgi|Araly1|495211|fgenesh2_kg.8__1027__AT5G51400.1
Length=911
Score = 1376 bits (745), Expect = 0.0
Identities = 866/922 (94%), Gaps = 17/922 (2%)
Strand=Plus/Plus
Query 72 CACTCTTCGGTTTCTCCAATCCTTCATATGATGTCGGACGGAGGAGCACCGTCGAGATAC 131
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 CACTCTTCGGTTTCTCCAATCCTTCATATGATGTCTGACGGAGGAGCACCGTCGAGGTAC 60
Query 132 GTGAAGTTGACGAAGGAACAAGCTCCGGTCGATGAGATTCATCCCGGTGAACTCAATCAG 191
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct 61 GTGAAGTTGACAAAGGAACAAGCTCCGGTCGATGAGATTAATCCCGGCGAACTTAATCAG 120
Query 192 CCCATTGAAGTTTCTCATCTAGCTGTTCACAAATGCAATGAGTGTGGCCAACCTTTGCCT 251
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 CCGATTGAAGTTTCTCATCTAGCTGTTCACAAATGTAATGAGTGTGGCCAACCTTTGCCT 180
Query 252 GAGAATTTTGAAGCTCCTGCTGATGAGCCCTGGACTACCGGAATATTCGGCTGCACTGAG 311
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 GAGAATTTTGAAGCTCCTGCTGATGAGCCATGGACTACCGGAATATTCGGCTGCACCGAG 240
Query 312 GACATGAATAGTTTTTGGCTGGGACTTTTCTGCCCAAGTGTTCTATTTGGACGTGTCTAT 371
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 241 GACATGAATAGTTTTTGGCTGGGACTTTTTTGCCCAAGTGTTCTATTTGGGCGTGTCTAT 300
Query 372 GAAACTCTGAGTGATGAGGAAACCTCGTGGA-AGAAAGCATGTATTTGCCATTCCATTGT 430
|||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 301 GAAACTCTGAGTGACGAGGAAACCTCATGGACA-AAAGCATGTATTTGCCATTCCATTGT 359
Query 431 AGTAGAAGGCGGTCTTACTGCTGCATCGATGCTTGCTTGTGTTCCCGGTATTGATCCGCA 490
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 360 AGTAGAAGGCGGTCTTACTGCTGCATCGATGCTTACTTGTGTTCCCGGTATTGATCCGCA 419
Query 491 TACTTCTTTACTTATATGGGAAGGTTTGTTGTTTGTTTGGTGGATGTGTGGGATATACAC 550
||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 TACGTCTTTTCTTATATGGGAAGGTTTGATGTTTGTTTGGTGGATGTGTGGGATATACAC 479
Query 551 TGGAAATGTCCGTCAAACTCTACAAAGGAAATATCATCTTCAGAATGCTCCATGTGATCC 610
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 480 CGGAAATGTCCGCCAAACTCTACAAAGGAAATATCATCTCCAGAACGCTCCATGTGATCC 539
Query 611 ATGTATGGTGCATTGTTGCCTTCACTTTTGTGCGGTTTGTCAAGAGCACCGTGAGATGAA 670
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 ATGTATGGTGCATTGTTGCCTTCACTTTTGTGCGGTTTGCCAAGAGCACCGTGAGATGAA 599
Query 671 GAATCGTCTTTCGGATAACTTTGTGATGCCTATGACTGTTATCAACCCACCACCGGTTCA 730
||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 600 GAACCGTCTTTCGGATAACTTTGTGATGCCCATGACTGTTATTAACCCGCCACCGGTTCA 659
Query 731 AGAGATGAGTGCTTCTGGTGACAGAGACCAACACCACCACAACTCTGTTCCGGTTTCACA 790
||| |||||||| ||||||||||||||||| | | ||||||||||||| |||||||||||
Sbjct 660 AGAAATGAGTGCCTCTGGTGACAGAGACCA-C-C-ACCACAACTCTGTCCCGGTTTCACA 716
Query 791 CCATAGCTCTGATCTTGAGATGAGGCCATTGTAGTCCTCAATGGTTCCCCATCAGATTCA 850
|||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||
Sbjct 717 CCATAGCTCTGATCTTGAGATGCGGCCATTGTAGTC-TCAATG-TTCCCCACCAGATTCA 774
Query 851 AGGTTTTGTTTTGCCTGAATCTAACTTTATATATGTAAACCGATTTGGTTTGTTTCAAAC 910
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 775 AGGTTTTGTTTTGCCTGAATCTA-CTTTATAT--GTAAACCGATTTGGTTTGTTTCAAAA 831
Query 911 TCA---T-ATAGA-TAGATTCGGATTCTGGTTTTCCTTGTGTAATCATGATTTATCATTA 965
||| | ||| | ||||| | ||||||||||||| ||| ||||||||||||||| ||
Sbjct 832 TCAAACTTATATACTAGATA-G-ATTCTGGTTTTCCATGTATAATCATGATTTATCCTTG 889
Query 966 TCTCAAAATTAAGATTTTCTAT 987
||||||||||||||||||||||
Sbjct 890 TCTCAAAATTAAGATTTTCTAT 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36979229490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5