BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51410.1 Length=1586 Score E Sequences producing significant alignments: (Bits) Value Ahg495212 jgi|Araly1|495212|fgenesh2_kg.8__1028__AT5G51410.2 2061 0.0 > Ahg495212 jgi|Araly1|495212|fgenesh2_kg.8__1028__AT5G51410.2 Length=2048 Score = 2061 bits (1116), Expect = 0.0 Identities = 1210/1256 (96%), Gaps = 4/1256 (0%) Strand=Plus/Plus Query 1 GGCGAACGAAACCCTAATCATCACTTCTCCACTTTTGTTCGTCATCCTCTTCAAAATTTC 60 ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||| Sbjct 1 GGCGAACGAAACCCTAATCATCACTCCTCCACTTTTGTTCATCATCCTCTCCAAAATTTC 60 Query 61 TTCAATTTGATTCTGCAATTTCCTTTA-TCTCTCTCTGGATTAAGTTTCAATTTCTTCTT 119 |||||||||||||||||||| || ||| |||||||||||||| ||||||||||||||| | Sbjct 61 TTCAATTTGATTCTGCAATTGCC-TTATTCTCTCTCTGGATTCAGTTTCAATTTCTTCGT 119 Query 120 AGCCCGCCATGGATGCTCAGCGAGCTCTGTTGGACGAACTAATGGGCGCAGCTCGTAATC 179 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 120 AGCCCGCCATGGATGCTCAGCGAGCTCTGTTGGACGAACTTATGGGGGCAGCTCGTAATC 179 Query 180 TGACAGACGAAGAGAGAAGAGGGTTCAAGGAGGTTAAGTGGGACGATAGAGAAGTATGTG 239 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 180 TGACAGACGAAGAGAGAAGAGGTTTCAAGGAGGTTAAGTGGGACGATAGAGAAGTTTGTG 239 Query 240 CATTCTATATGGTTCGATTTTGTCCTCATGACCTCTTTGTTAACACGAAAAGCGATCTTG 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CATTCTATATGGTTCGATTTTGTCCTCATGACCTCTTTGTTAACACGAAAAGCGATCTTG 299 Query 300 GAGCATGCTCGAGAATTCATGATCCAAAGTTGAAAGAAAGCTTCGAGAACTCTCCGAGGC 359 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 300 GAGCATGCTCGAGAATTCATGATCCAAAGTTGAAAGAGAGCTTTGAGAACTCTCCGAGGC 359 Query 360 ATGATTCCTATGTGCCTAAATTCGAGGCTGAGCTTGCACAGTTTTGCGAGAAGTTGGTGA 419 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 360 ATGATTCCTATGTGCCTAAATTTGAGGCTGAGCTTGCACAGTTTTGCGAGAAGTTGGTGA 419 Query 420 ATGATCTTGATAGGAAAGTTAGGCGTGGGCGAGAACGTCTTGCACAAGAAGTTGAACCGG 479 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 420 ATGATCTTGATAGGAAAGTTAGGCGTGGGCGAGAACGCCTTGCACAAGAAGTTGAACCGC 479 Query 480 TTCCACCACCTTCTCTATCAGCAGAGAAAGCTGAACAATTGTCTGTCTTGGAGGAGAAAG 539 |||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| Sbjct 480 CTCCACCACCTTCTCTATCAGCAGAAAAAGCGGAACAATTGTCTGTTTTGGAGGAGAAAG 539 Query 540 TTAAGAACCTTTTGGAACAAGTGGAAGCACTTGGTGAAGAAGGCAAAGTGGATGAAGCTG 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TTAAGAACCTTTTGGAACAAGTGGAAGCACTTGGTGAAGAAGGCAAAGTGGATGAAGCTG 599 Query 600 AAGCGCTAATGAGGAAGGTGGAAGGGCTAAATGCTGAGAAGACAGTGTTGTTACAACGAC 659 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 600 AAGCGCTAATGAGGAAGGTGGAAGGGCTTAATGCTGAGAAGACGGTGTTGTTACAACGAC 659 Query 660 CAACTGACAAGGTACTCGCGATGGCTCAGGAGAAGAAGATGGCATTGTGTGAGGTTTGTG 719 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 660 CAACTGACAAGGTACTCGCTATGGCTCAGGAGAAGAAGATGGCATTGTGTGAGGTTTGTG 719 Query 720 GTTCATTTCTTGTGGCTAATGATGCAGTAGAAAGAACACAGTCTCATGTCACTGGAAAGC 779 ||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 720 GTTCATTCCTTGTGGCTAATGATGCTGTAGAGAGAACGCAGTCTCATGTCACTGGAAAGC 779 Query 780 AACATGTTGGCTATGGCTTGGTTCGGGATTTTATTGCTGAACaaaaagctgctaaagata 839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 AACATGTTGGCTATGGCTTGGTTCGGGATTTTATTGCTGAACAAAAAGCTGCTAAAGATA 839 Query 840 aaggaaaggaagaagaaagactagtaagaggaaaagaagcagatgataagaggaaaccaa 899 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 840 AAGGAAAGGAAGAAGAAAGGCTAGTAAGAGGAAAAGAAGCAGATGATAAGAGGAAACCGA 899 Query 900 ggGAGAAGGAAAGCGAGAGTAAGAGGAGTGGTTCTAGTGATAGAGAAAGATATCGTGATC 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GGGAGAAGGAAAGCGAGAGTAAGAGGAGTGGTTCTAGTGATAGAGAAAGATATCGTGATC 959 Query 960 GAGACCGAAACAGAGATGGTGACAGACACAGAGACCGTGGTAGAGATTATAGAAAGCCTT 1019 | |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 960 GGGACCGAGACAGAGATGGTGACAGACACAGAGACCGTGGTAGAGATCATAGAAAGCCTC 1019 Query 1020 ATGACAGGAGATCGAGGAGTGGGAGAGAGGACCGAGATCGAAGCAGGTCACGATCTCCTC 1079 ||||||||||||| |||||||||||||||| ||| ||||||||||| ||||||||||||| Sbjct 1020 ATGACAGGAGATCAAGGAGTGGGAGAGAGGGCCGTGATCGAAGCAGATCACGATCTCCTC 1079 Query 1080 ATGGAAGGTCTGGTCACAGAAGGGTGTCGAGAAGCCCCATTCGCCAATACTAGTTTGAGA 1139 ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 1080 ATGGAAGGTCTGGTCACCGAAGGGTGTCGAGAAGCCCCATTCGCCAGTACTAGTTTGAGA 1139 Query 1140 CCCTCGTGGAAGGTCTGGTCACGAA-AGGGTGTTGAGAAGCACCATTTGCCAGTACTAGT 1198 ||||| |||||||||||||||| || ||||||||||||||| |||||||||||||||||| Sbjct 1140 CCCTCATGGAAGGTCTGGTCAC-AAGAGGGTGTTGAGAAGCCCCATTTGCCAGTACTAGT 1198 Query 1199 TTGAGATAAGGTGTTGTCACTATGTCTTGGGGCCAGGAACTTTGCAAATTAATGAG 1254 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| Sbjct 1199 TTGAGATAAGGTGTTGTCACTGTATCTTGGGGCCAGGAACTTTGCAAATTAATGAG 1254 Score = 344 bits (186), Expect = 1e-93 Identities = 219/234 (94%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 1356 AGCTATTCTAAGAGTTTGAGACCTTACCGATTCTCCTTCATCGGTTATTTGTTAAGAGGT 1415 ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 1253 AGCTATTCTAAGAGTTTGAGACCTTACTGATTATCCTTCATCGGTTATTTGTTAAGAGGT 1312 Query 1416 CAAAAGCGTTGAGGTAGGTATTACCCGTAAAACTTTTACATTTTCATTGTATTTCTCGAT 1475 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1313 CAAAAGCATTGAGGTAGGTATTA-CCGTAAAACTTTTACATTTTCATTGTATTTCTCGGT 1371 Query 1476 ACTTGAGATGCTATAGCGTCAttttatttt-atttttgtcttttGGTACACCATTTCAAG 1534 ||||| ||||||||||| |||||||||||| || || |||||||||||| |||||||||| Sbjct 1372 ACTTGGGATGCTATAGCTTCATTTTATTTTTATATT-GTCTTTTGGTACCCCATTTCAAG 1430 Query 1535 TTTGATATACCTTTCTGATTTAAAGAATACA--GAATCGGGATTGTTGGGATCG 1586 ||||||||||||||||||| |||||| |||| ||||||||||||||||||||| Sbjct 1431 TTTGATATACCTTTCTGATCTAAAGACTACACAGAATCGGGATTGTTGGGATCG 1484 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59420782200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5