BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51410.1
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495212 jgi|Araly1|495212|fgenesh2_kg.8__1028__AT5G51410.2 2061 0.0
> Ahg495212 jgi|Araly1|495212|fgenesh2_kg.8__1028__AT5G51410.2
Length=2048
Score = 2061 bits (1116), Expect = 0.0
Identities = 1210/1256 (96%), Gaps = 4/1256 (0%)
Strand=Plus/Plus
Query 1 GGCGAACGAAACCCTAATCATCACTTCTCCACTTTTGTTCGTCATCCTCTTCAAAATTTC 60
||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 1 GGCGAACGAAACCCTAATCATCACTCCTCCACTTTTGTTCATCATCCTCTCCAAAATTTC 60
Query 61 TTCAATTTGATTCTGCAATTTCCTTTA-TCTCTCTCTGGATTAAGTTTCAATTTCTTCTT 119
|||||||||||||||||||| || ||| |||||||||||||| ||||||||||||||| |
Sbjct 61 TTCAATTTGATTCTGCAATTGCC-TTATTCTCTCTCTGGATTCAGTTTCAATTTCTTCGT 119
Query 120 AGCCCGCCATGGATGCTCAGCGAGCTCTGTTGGACGAACTAATGGGCGCAGCTCGTAATC 179
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 120 AGCCCGCCATGGATGCTCAGCGAGCTCTGTTGGACGAACTTATGGGGGCAGCTCGTAATC 179
Query 180 TGACAGACGAAGAGAGAAGAGGGTTCAAGGAGGTTAAGTGGGACGATAGAGAAGTATGTG 239
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 180 TGACAGACGAAGAGAGAAGAGGTTTCAAGGAGGTTAAGTGGGACGATAGAGAAGTTTGTG 239
Query 240 CATTCTATATGGTTCGATTTTGTCCTCATGACCTCTTTGTTAACACGAAAAGCGATCTTG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CATTCTATATGGTTCGATTTTGTCCTCATGACCTCTTTGTTAACACGAAAAGCGATCTTG 299
Query 300 GAGCATGCTCGAGAATTCATGATCCAAAGTTGAAAGAAAGCTTCGAGAACTCTCCGAGGC 359
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 300 GAGCATGCTCGAGAATTCATGATCCAAAGTTGAAAGAGAGCTTTGAGAACTCTCCGAGGC 359
Query 360 ATGATTCCTATGTGCCTAAATTCGAGGCTGAGCTTGCACAGTTTTGCGAGAAGTTGGTGA 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 ATGATTCCTATGTGCCTAAATTTGAGGCTGAGCTTGCACAGTTTTGCGAGAAGTTGGTGA 419
Query 420 ATGATCTTGATAGGAAAGTTAGGCGTGGGCGAGAACGTCTTGCACAAGAAGTTGAACCGG 479
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 420 ATGATCTTGATAGGAAAGTTAGGCGTGGGCGAGAACGCCTTGCACAAGAAGTTGAACCGC 479
Query 480 TTCCACCACCTTCTCTATCAGCAGAGAAAGCTGAACAATTGTCTGTCTTGGAGGAGAAAG 539
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 480 CTCCACCACCTTCTCTATCAGCAGAAAAAGCGGAACAATTGTCTGTTTTGGAGGAGAAAG 539
Query 540 TTAAGAACCTTTTGGAACAAGTGGAAGCACTTGGTGAAGAAGGCAAAGTGGATGAAGCTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTAAGAACCTTTTGGAACAAGTGGAAGCACTTGGTGAAGAAGGCAAAGTGGATGAAGCTG 599
Query 600 AAGCGCTAATGAGGAAGGTGGAAGGGCTAAATGCTGAGAAGACAGTGTTGTTACAACGAC 659
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 600 AAGCGCTAATGAGGAAGGTGGAAGGGCTTAATGCTGAGAAGACGGTGTTGTTACAACGAC 659
Query 660 CAACTGACAAGGTACTCGCGATGGCTCAGGAGAAGAAGATGGCATTGTGTGAGGTTTGTG 719
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CAACTGACAAGGTACTCGCTATGGCTCAGGAGAAGAAGATGGCATTGTGTGAGGTTTGTG 719
Query 720 GTTCATTTCTTGTGGCTAATGATGCAGTAGAAAGAACACAGTCTCATGTCACTGGAAAGC 779
||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 720 GTTCATTCCTTGTGGCTAATGATGCTGTAGAGAGAACGCAGTCTCATGTCACTGGAAAGC 779
Query 780 AACATGTTGGCTATGGCTTGGTTCGGGATTTTATTGCTGAACaaaaagctgctaaagata 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACATGTTGGCTATGGCTTGGTTCGGGATTTTATTGCTGAACAAAAAGCTGCTAAAGATA 839
Query 840 aaggaaaggaagaagaaagactagtaagaggaaaagaagcagatgataagaggaaaccaa 899
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 840 AAGGAAAGGAAGAAGAAAGGCTAGTAAGAGGAAAAGAAGCAGATGATAAGAGGAAACCGA 899
Query 900 ggGAGAAGGAAAGCGAGAGTAAGAGGAGTGGTTCTAGTGATAGAGAAAGATATCGTGATC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGGAGAAGGAAAGCGAGAGTAAGAGGAGTGGTTCTAGTGATAGAGAAAGATATCGTGATC 959
Query 960 GAGACCGAAACAGAGATGGTGACAGACACAGAGACCGTGGTAGAGATTATAGAAAGCCTT 1019
| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 960 GGGACCGAGACAGAGATGGTGACAGACACAGAGACCGTGGTAGAGATCATAGAAAGCCTC 1019
Query 1020 ATGACAGGAGATCGAGGAGTGGGAGAGAGGACCGAGATCGAAGCAGGTCACGATCTCCTC 1079
||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||
Sbjct 1020 ATGACAGGAGATCAAGGAGTGGGAGAGAGGGCCGTGATCGAAGCAGATCACGATCTCCTC 1079
Query 1080 ATGGAAGGTCTGGTCACAGAAGGGTGTCGAGAAGCCCCATTCGCCAATACTAGTTTGAGA 1139
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1080 ATGGAAGGTCTGGTCACCGAAGGGTGTCGAGAAGCCCCATTCGCCAGTACTAGTTTGAGA 1139
Query 1140 CCCTCGTGGAAGGTCTGGTCACGAA-AGGGTGTTGAGAAGCACCATTTGCCAGTACTAGT 1198
||||| |||||||||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 1140 CCCTCATGGAAGGTCTGGTCAC-AAGAGGGTGTTGAGAAGCCCCATTTGCCAGTACTAGT 1198
Query 1199 TTGAGATAAGGTGTTGTCACTATGTCTTGGGGCCAGGAACTTTGCAAATTAATGAG 1254
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1199 TTGAGATAAGGTGTTGTCACTGTATCTTGGGGCCAGGAACTTTGCAAATTAATGAG 1254
Score = 344 bits (186), Expect = 1e-93
Identities = 219/234 (94%), Gaps = 5/234 (2%)
Strand=Plus/Plus
Query 1356 AGCTATTCTAAGAGTTTGAGACCTTACCGATTCTCCTTCATCGGTTATTTGTTAAGAGGT 1415
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1253 AGCTATTCTAAGAGTTTGAGACCTTACTGATTATCCTTCATCGGTTATTTGTTAAGAGGT 1312
Query 1416 CAAAAGCGTTGAGGTAGGTATTACCCGTAAAACTTTTACATTTTCATTGTATTTCTCGAT 1475
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1313 CAAAAGCATTGAGGTAGGTATTA-CCGTAAAACTTTTACATTTTCATTGTATTTCTCGGT 1371
Query 1476 ACTTGAGATGCTATAGCGTCAttttatttt-atttttgtcttttGGTACACCATTTCAAG 1534
||||| ||||||||||| |||||||||||| || || |||||||||||| ||||||||||
Sbjct 1372 ACTTGGGATGCTATAGCTTCATTTTATTTTTATATT-GTCTTTTGGTACCCCATTTCAAG 1430
Query 1535 TTTGATATACCTTTCTGATTTAAAGAATACA--GAATCGGGATTGTTGGGATCG 1586
||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 1431 TTTGATATACCTTTCTGATCTAAAGACTACACAGAATCGGGATTGTTGGGATCG 1484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5