BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51440.1
Length=910
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495215 jgi|Araly1|495215|fgenesh2_kg.8__1031__AT5G51440.1 1000 0.0
> Ahg495215 jgi|Araly1|495215|fgenesh2_kg.8__1031__AT5G51440.1
Length=714
Score = 1000 bits (541), Expect = 0.0
Identities = 620/657 (94%), Gaps = 10/657 (2%)
Strand=Plus/Plus
Query 67 TCTCTTTCCAAAAATGGCGTCATCATCGGCTTTAGCTCTCAGGAGACTTCTCTCTTCTTC 126
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 1 TCTCTTTCCAAAAATGGCGTCATCATCGTCCTTAGCTCTCAAGAGACTTCTCTCTTCTTC 60
Query 127 CACCGTCGCCGTCCCTCGCGCCTTAAGAGCCGTTCGTCCGGTGGCTGCTTCATCTCGCCT 186
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 CACCGTCGTCGTCCCTCGCGCCTTAAGAGCCGTTCGTCCGGTGGCTGCTTCTTCTCGCCT 120
Query 187 CTTCAATACCAACGCCGCCAGAAACTATGAAGACGGTGTCGATAGGAACCATCACTCAAA 246
||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 121 CTTCAATACCAACGCCGTCAGAAACTATGATGACGGCGTCGATAGGAACCATAACTCAAA 180
Query 247 CCGACATGTTTCTCGCCACGGCGGCGATTTCTTCTCACATATAC-TCGATCCGTTTACTC 305
|||||||||| |||||| ||||||||||||||||||| |||| | |||||||||||||||
Sbjct 181 CCGACATGTTACTCGCCGCGGCGGCGATTTCTTCTCAGATAT-CTTCGATCCGTTTACTC 239
Query 306 CAACGAGAAGCTTGAGCCAGATGCTGAATTTCATGGACCAGGTAAGCGAAATCCCTTTGG 365
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 CGACGAGAAGCTTGAGCCAGATGCTGAATTTCATGGACCAGGTCAGCGAAATCCCTTTGG 299
Query 366 TATCAGCTACTCGTGGAATGGGAGCTTCTGGAGTTAGACGTGGTTGGAACGTGAAAGAGA 425
|| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 300 TAGCAGCTACGCGTGGAATGGGAGCTTCTGGAGTTAGACGTGGCTGGGACGTGAAAGAGA 359
Query 426 AAGACGACGCGTTGCATCTAAGGATAGATATGCCGGGACTAAGCAGAGAGGATGTGAAAT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGACGACGCGTTGCATCTAAGGATAGATATGCCGGGACTAAGCAGAGAGGATGTGAAAT 419
Query 486 TGGCTTTGGAACAGAACACATTGGTGATTAGAGGAGAAGGGGAAACAGAGGA-GG-GAG- 542
|||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||
Sbjct 420 TGGCTTTGGAACAGAACACATTGGTGATTAAAGGAGAAGGGAAAACAGAGGAAGGAGAGG 479
Query 543 A---AGATGTTTCTGGAGATGGACGGAGGTTTACGAGTAGGATTGAGTTACCGGAGAAAG 599
| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 480 AGGGAGATGGTTCTGGAGATGGACGGAGGTTTACGAGTAGGATTGGGTTACCTGAGAAAG 539
Query 600 TATACAAGACTGATGAGATTAAGGCGGAAATGAAGAATGGTGTGTTGAAAGTGGTGATTC 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 540 TATACAAGACTGATGAGATTAAGGCGGAGATGAAGAATGGTGTGTTGAAAGTGGTGATTC 599
Query 660 C-AAAGATTAAAGAGGATGAGCGTAACAATATTCGTCACATAAACGTTGACTAGAGT 715
| |||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 600 CTAAAG-TTAAAGAGGAGGAGCGTAACAATGTTCGTCACATAAATGTTGACTAGAGT 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33738781545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5