BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51450.2
Length=2603
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916765 jgi|Araly1|916765|Al_scaffold_0008_1516 2104 0.0
Ahg492309 jgi|Araly1|492309|fgenesh2_kg.7__1742__AT4G25230.2 1404 0.0
> Ahg916765 jgi|Araly1|916765|Al_scaffold_0008_1516
Length=1734
Score = 2104 bits (1139), Expect = 0.0
Identities = 1256/1313 (96%), Gaps = 6/1313 (0%)
Strand=Plus/Plus
Query 222 ATGGGGATAACATATTTGCACATTTCCGTGGCAACAACAGCTTTGAGCTTTGTGGGTTTA 281
|||| ||||| |||| ||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1 ATGGAGATAAGATATCTGCCCATTTCTTTGGCAACAACAGCTTTGAGCATTGTGGGTTTA 60
Query 282 CAAGTCTGGACGGAGTTGTCTCTTGATAGACTTAGAGCTGATGGGATAATCACCAAGAAC 341
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CAAGTCTGGACGGAGTTGTCTCTTGATAGACTTAGAGCTGATGGGATTATCACCAAGAAC 120
Query 342 ATTTCTTTAGGGA-ATTCTGAGAATACCCTTGAGCTTCTTCTGAGTTCTCACACTACAAT 400
|||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 121 GTTTCTTTA-GGAGATTCTGAGAATACCCTTGAGCTGCTTTTGAGTTCTCACACTACAAT 179
Query 401 TGCATTGCTGGCAAGTTTTGTTCTCAATATCTACATTCTTCTTGTTCTTTCTCTCAAGAC 460
||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 180 TGCCTTGCTGGCAAGTTTTGTACTCAATGTCTACATTCTTCTTGTTCTTTCTCTCAAGAC 239
Query 461 TCTGTTTTTTGGAGATCTATATGCCATTGAAACTAGAAAACTGGTGGAAAGGCTTGCCAA 520
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TCTGTTTTTTGGGGATCTATATGCCATTGAAACTAGAAAGCTGGTGGAAAGGCTTGCCAA 299
Query 521 TTACATCATTTACAAGGGCACTTTTCTGCCATTCGTGGTTCCACGAACAGTATTTCAGGG 580
||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||
Sbjct 300 TTACATCATTTACAAGGGCACTTTTCTTCCATTGGTGGTTCCACCAACAGTATTTCAGGG 359
Query 581 GGTCCTATGGACAATCTGGTTGACTGTTCTGTGTACTCTAAAGATGTTTCAAGCTTTGGC 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GGTCCTATGGACAATCTGGTTGACTGTTCTGTGTACTCTAAAGATGTTTCAAGCTTTGGC 419
Query 641 TAGAGATCGGCTTGATCGATTGAATGCATCTCCTTCTTCGACTCCTTGGACATACTTTCG 700
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 TAGAGATCGGCTTGATCGATTGAATGCATCTCCTTCTTCTACTCCTTGGACATACTTTCG 479
Query 701 TGTGTATTCAGCACTGTTCATGGTTCTCTCTACTGATTTGTGCTGGATAAAGCTTTCCCT 760
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 TGTGTATTCAGCACTGTTCATGGTTCTCTCTGCTGATTTGTGCTGGATAAAGCTTTCCCT 539
Query 761 TATGATATACAATACAGTTGGTTCGTCTGTCTATTTACTGTTACTTTTTGAGCCATGCGG 820
||||||||||| |||| ||||||| ||||| |||||| |||||||||||||||||||| |
Sbjct 540 TATGATATACAGTACAATTGGTTCATCTGTGTATTTATTGTTACTTTTTGAGCCATGCAG 599
Query 821 TATAGCTTTTGAGACCTTGCAGGCGTTGTTGATTCACGGGTTTCAACTGCTTGATATGTG 880
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTAGCTTTTGAGACCTTGCAGGCGTTGTTGATTCACGGGTTTCAACTGCTTGATATGTG 659
Query 881 GATCAACCACTTAGCAGTCAAGAATTCAGATTGCCAGAGATCAAAGTTTTATGATTCCAT 940
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 660 GATCAACCACTTTGCAGTCAAGAATTCAGATTGCCAAAGATCAAAGTTTTATGATTCTAT 719
Query 941 GACAGCAGGCTCGTTATTGGAATGGAAAGGCCTCCTCAACCGAAATCTTGGTTTCTTCCT 1000
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 720 GACAGCAGGCTCATTATTGGAATGGAAAGGCCTCCTCAACCGGAATCTGGGTTTCTTCCT 779
Query 1001 AGACATGGCTACCTTGGTAATGGCCCTCGGTCATTATTTGCACATCTGGTGGCTCCATGG 1060
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 780 AGATATGGCTACCTTGGTAATGGCCCTCGGTCATTATTTGCACATCTTGTGGCTCCATGG 839
Query 1061 AATGGCCTTCCATCTGGTGGATGCAGTTTTGTTTCTCAACATACGTGCCTTGCTAAGTTC 1120
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 AATGGCCTTCCATCTGATGGATGCAGTTTTGTTTCTCAACATACGTGCCTTGCTAAGTGC 899
Query 1121 AATTTTGAAACGAATAAAAGGATACATCAAACTGAGAGTAGCTTTAGGTGCTCTTCATGC 1180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 900 AATTTTGAAACGAATAAAAGGATACATCAAACTGAGAGTAGCTCTAGGTGCTCTTCATGC 959
Query 1181 AGCTCTTCTTGATGCAACTTCAGAAGAGCTACGGG-ATTATGATGACGAATGTGCTATAT 1239
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 960 AGCTCTTCCTGATGCAACTTCAGAAGAGCTACGGGCAT-ATGATGACGAATGTGCTATAT 1018
Query 1240 GTCGGGAACCAATGGCTAAGGCTAAAAGACTTCACTGCAACCACCTTTTTCATCTTGGCT 1299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 GTCGGGAACCAATGGCTAAGGCTAAAAGACTTCACTGCAACCACCTTTTTCATCTTGGAT 1078
Query 1300 GCCTACGATCATGGTTGGATCAAGGTTTAAATGAGGTTTACTCTTGTCCTACTTGCCGTA 1359
|||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1079 GCCTGCGATCATGGTTAGATCAAGGTTTAAATGAGGTTTACTCCTGTCCTACATGCCGTA 1138
Query 1360 AGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGCGAATCCTAGCAGAGGAGAAGTCTCAA 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1139 AGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGCGAATCCTAGCAGAGGAGAAGTATCAA 1198
Query 1420 GCGATGAACACTTAGCCCGTCAATTTGAGAGACAAAACAATTCTGTGCATGCACTAACCA 1479
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1199 GCGATGAACACTTAGCCCGTCAATTTGAGAGACAAAATAATTCTGTGCATGCCCTAACCA 1258
Query 1480 CTGGAATGTTTCCAACTGAGACGCCAAATTTCACC-GAAAGTGATCCTTGGAG 1531
|||| ||||||||||||||||||||||||| || | ||||||||||| |||||
Sbjct 1259 CTGGGATGTTTCCAACTGAGACGCCAAATT-CAACTGAAAGTGATCCGTGGAG 1310
Score = 682 bits (369), Expect = 0.0
Identities = 408/427 (96%), Gaps = 2/427 (0%)
Strand=Plus/Plus
Query 1584 AGGAATTCA-GAGGTGGATCCAAGCTGGCTGCAAACATGGTCAGATCAGGGTGTTGATGT 1642
||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1309 AGGAATTCAGGA-CTGGATCAAAGCTGGCTGCAAACATGGTCAGATCAGGGTGTTGATGT 1367
Query 1643 TGTGGGTTCCTCTGCAGGCTCCAGATCCGTTGGGCTGGGGCAGGTTCAATTGATGATGAG 1702
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 TGTGGGTCCCTCTACAGGCTCCAGATCCGTTGGGCTGGGGCAGGTTCAATTGATGATGAG 1427
Query 1703 GCATCTTGCATCTGTAGGGGAAGGTTCTGCTCAGACTACACTTGACGATGCTTCTTGGGG 1762
||||||| ||||||| ||||||| || | |||||||| ||||||||||||||||||||||
Sbjct 1428 GCATCTTACATCTGTTGGGGAAGATTATACTCAGACTGCACTTGACGATGCTTCTTGGGG 1487
Query 1763 TCTCTGGCCAATGAATCCTTCGCAAGCATCGACTTCATCTACATATGTTCCTCCTGGTGC 1822
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 TCTCTGGCCAATGAATCCTGCGCAAGCATCGACTTCATCTACATATGTTCCTCCTGGTGC 1547
Query 1823 TGGAGGAAGAACAGGTGGTCTGCATCTAAGAACTGTCTCCCGTGCAGCAAATAACATGGC 1882
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1548 TGGGGGAAGAACAGGTGGTCTGCATCTGAGAACTGTCTCCCGTGCAGCAAATAATATGGC 1607
Query 1883 GAGTATACTAGCAATGGCCGAGACAGTAAGGGAAGTCCTCCCACATGTGCCTGATGAAAT 1942
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1608 GAGTATACAAGCTATGGCCGAGACAGTAAGGGAAGTCCTCCCACATGTGCCTGATGAAAT 1667
Query 1943 AATTTTTCAGGACCTGCAAAGAACAAATTCTGTTTCTGTTACAGTGAACAATCTTCTCCA 2002
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 AATTTTCCAGGACCTGCAAAGAACAAATTCTGTTTCTGTTACAGTGAACAATCTTCTCCA 1727
Query 2003 GATGTGA 2009
|||||||
Sbjct 1728 GATGTGA 1734
> Ahg492309 jgi|Araly1|492309|fgenesh2_kg.7__1742__AT4G25230.2
Length=2322
Score = 1404 bits (760), Expect = 0.0
Identities = 1180/1382 (85%), Gaps = 31/1382 (2%)
Strand=Plus/Plus
Query 166 ATG-CTAAATGAGAATCTGTGGG-TTAA-TTCGGAGTGAGAAGGCTATAATAGTTTCTAA 222
||| |||||||||| |||| ||| |||| || |||| ||||||| | || ||| ||||
Sbjct 61 ATGACTAAATGAGATTCTG-GGGATTAAGTT-TAAGTGGGAAGGCTGTTATTGTTCCTAA 118
Query 223 TGGGGATAACA-TATTTG-CACATTTCCGTGGCAACAACAGCTTTGAGCTTTG-TGGGTT 279
||||||||| | || ||| | | | ||||| ||| |||||||| | ||||||| ||| |
Sbjct 119 TGGGGATAA-AGTACTTGCCGC-TCTCCGTAGCATCAACAGCTCTCAGCTTTGTTGGACT 176
Query 280 TACAAGTCTGGACGGAGTTGTCTCTTGATAGACTTAGAGCTGATGGGATAATCACCAAGA 339
| ||||||||||| ||||| ||||| ||||||||| ||||||||||| | || ||||||
Sbjct 177 T-CAAGTCTGGACAGAGTTTTCTCTCGATAGACTTCGAGCTGATGGGCTGATTGCCAAGA 235
Query 340 ACATTTCTTTAGGGA-ATTCTGAGAATACCCTTGAGCTTCTTCT-GAGTTCTCACACT-A 396
|| |||||||| ||| | || ||| || | |||||||| ||||| | | ||| | | |
Sbjct 236 ACGTTTCTTTA-GGAGACTCCGAGCATGCGCTTGAGCTGCTTCTCG-GCTCTTA-TTTCA 292
Query 397 CAATTGCATTGCTGGCAAGTTTTGTTCTCAATATCTACATTCTTCTTG-TTCTTTCTCTC 455
| ||||| |||| ||| |||||| |||||| | || ||||||| || | |||||||||
Sbjct 293 CTATTGCGCTGCTCACAAATTTTGTGCTCAATGTGTATATTCTTC-TGCTACTTTCTCTC 351
Query 456 AAGACTCTGTTTTTTGGAGATCTATATGCCATTGAAACTAGAAAA-CTGGTGGAAAGGCT 514
|||||||| |||||||||||| |||||| | ||||||||| |||| ||||||| | ||
Sbjct 352 AAGACTCTATTTTTTGGAGATTTATATGACGTTGAAACTA-AAAAGTTGGTGGAGCGACT 410
Query 515 TGCCAATTACATCATTTACAAGGGCACTTTTCTGCCATTCGTGGTTCCACGAACAGTATT 574
||||||||| ||||| |||||||| || ||||| ||| | ||| |||| | |||| ||||
Sbjct 411 TGCCAATTATATCATATACAAGGGTACGTTTCTACCACTGGTGATTCCCCCAACAATATT 470
Query 575 TCAGGGGGTCCTATGGACAATCTGGTTGACTGTTCTGTGTACTCTAAAGATGTTTCAAGC 634
|||||| || || |||||| | |||||||||||||| |||||| ||||||||||||||||
Sbjct 471 TCAGGGTGTACTGTGGACAGTTTGGTTGACTGTTCTATGTACTTTAAAGATGTTTCAAGC 530
Query 635 TTTGGCTAGAGATCGGCTTGATCGATTGAATGCATCTCCTTCTTCGACTCCTTGGACATA 694
|||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct 531 TTTGGCTAGAGACCGGCTTGAACGATTGAATGCATCTCCTTCTTCTACACCTTGGACATA 590
Query 695 CTTTCGTGTGTATTCAGCACTGTTCATGGTTCTCTCTACTGATTTGTGCTGGATAAAGCT 754
||||||||||||||||| |||||| |||| |||||| |||| ||| ||||||||| ||
Sbjct 591 CTTTCGTGTGTATTCAGTGCTGTTCTTGGTCCTCTCTGTTGATATGTTCTGGATAAAACT 650
Query 755 TTCCCTTATGATATACAATACAGTTGGTTCGTCTGTCTATTTACTGTTACTTTTTGAGCC 814
||||||||||| |||||||||| ||||||| ||||| ||| | ||||||||||||||||
Sbjct 651 TTCCCTTATGACATACAATACAATTGGTTCCTCTGTGTATCTGTTGTTACTTTTTGAGCC 710
Query 815 ATGCGGTATAGCTTTTGAGACCTTGCAGGCGTTGTTGATTCACGGGTTTCAACTGCTTGA 874
|||| |||||||||||||||||||||||||| |||| ||||| |||||||| ||||| ||
Sbjct 711 ATGCAGTATAGCTTTTGAGACCTTGCAGGCGCTGTTAATTCATGGGTTTCAGCTGCTAGA 770
Query 875 TATGTGGATCAACCACTTAGCAG-TCAAGAATTCAGATTGCCAGAGATCAAAGTTTTAT- 932
||||||||| ||||||||||||| || |||| ||||| ||||| ||||| ||| |||||
Sbjct 771 TATGTGGATTAACCACTTAGCAGTTC-AGAACTCAGACTGCCAAAGATCTAAG-TTTATC 828
Query 933 GATTCCATGACAGCAGGCTCGTTATTGGAATGGAAAGGCCTCCTCAACCGAAATCTTGGT 992
|||||||||||||||||||| | ||||||||||| |||||||||||||| |||||||||
Sbjct 829 GATTCCATGACAGCAGGCTCACTGTTGGAATGGAAGGGCCTCCTCAACCGTAATCTTGGT 888
Query 993 TTCTTCCTAGACATGGCTACCTTGGTAATGGCCCTCGGTCATTATTTGCACATCTGGTGG 1052
|||||||| ||||||||||| ||||||||||| || ||||||||||||||||| ||||||
Sbjct 889 TTCTTCCTGGACATGGCTACTTTGGTAATGGCACTAGGTCATTATTTGCACATTTGGTGG 948
Query 1053 CTCCATGGAATGGCCTTCCATCTGGTGGATGCAGTTTTGTTTCTCAACATACGTGCCTTG 1112
|| || || || ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 949 CTGCACGGCATTGCCTTTCATCTGGTGGATGCAGTTTTGTTTCTCAACATACGTGCATTG 1008
Query 1113 CTAAGTTCAATTTTGAAACGAATAAAAGGATACATCAAACTGAGAGTAGCTTTAGGTGCT 1172
|||||| |||||||||||||||||||||||||||| ||||| ||| ||||| | ||||||
Sbjct 1009 CTAAGTGCAATTTTGAAACGAATAAAAGGATACATTAAACTAAGAATAGCTCTGGGTGCT 1068
Query 1173 CTTCATGCAGCTCTTCTTGATGCAACTTCAGAAGAGCTACGGG-ATTATGATGACGAATG 1231
|| |||||||| || | ||||||||||| |||||| || ||| || ||||||| |||||
Sbjct 1069 CTCCATGCAGCCCTCCCCGATGCAACTTCTGAAGAGTTAAGGGCAT-ATGATGATGAATG 1127
Query 1232 TGCTATATGTCGGGAACCAATGGCTAAGGCTAAAAGACTTCACTGCAACCACCTTTTTCA 1291
|||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1128 TGCTATATGTCGGGAACCTATGGCCAAGGCTAAAAGGCTTCACTGCAACCACCTTTTCCA 1187
Query 1292 TCTTGGCTGCCTACGATCATGGTTGGATCAAGGTTTAAATGAGGTTTACTCTTGTCCTAC 1351
|||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1188 TCTTGGATGCCTGCGATCCTGGTTGGATCAAGGTTTAAATGAGGTTTATTCTTGTCCTAC 1247
Query 1352 TTGCCGTAAGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGCGAATCCT-AGCAGAG-GA 1409
|| ||||||||||||||||||||||||||||||||||||| ||| ||| | || || |
Sbjct 1248 ATGTCGTAAGCCTCTTTTTGTTGGTAGAACTGAAAGTGAGGTGAACCCTCA-CACAGTG- 1305
Query 1410 GAAGTCTCAAGCGATGAACACTTAGCCCGTCAATTTGAGAGACAAAACAATTCTGTGCAT 1469
||||||||||||||||| || ||||||||||| |||| |||||||||||| |||| |||
Sbjct 1306 GAAGTCTCAAGCGATGAGCAGTTAGCCCGTCAGCTTGAAAGACAAAACAATCCTGTACAT 1365
Query 1470 GCACTAACCACTGGAATGTTTCCAACTGAGACGCCAAATTTCACCGAAAGTGATCCTTGG 1529
|||||| | ||||| | ||||| | ||| |||||||| | ||||| |||| ||| |
Sbjct 1366 GCACTAGCAACTGGTTTATTTCCTGCAGAGGTGCCAAATTCCGTCGAAAATGATACTTCG 1425
Query 1530 AG 1531
||
Sbjct 1426 AG 1427
Score = 411 bits (222), Expect = 2e-113
Identities = 522/660 (79%), Gaps = 48/660 (7%)
Strand=Plus/Plus
Query 1584 AGGAATTCA-GAGGTGGATCCAAGCTGGCTGCAAACATGGTCAGATCAGGGTGT-TGATG 1641
||||||| | || ||||||||||||||||||| |||||||||| ||||||| | |||||
Sbjct 1426 AGGAATTTAGGA-TTGGATCCAAGCTGGCTGCAGACATGGTCAGGTCAGGGT-TCTGATG 1483
Query 1642 TTG-TGGGTTCCTCTGCAGGC-TCCAGATCCGTTGGGCTGGGGCAGGTTCA-ATTGATGA 1698
| | | ||| ||||| | || ||||| || ||||| ||||||| |||||| | ||||||
Sbjct 1484 TCGCT-GGTCCCTCTAC-CGCTTCCAGGTCAGTTGGACTGGGGCGGGTTCAGA-TGATGA 1540
Query 1699 TGAGGCATCTTGCATCTGTAGGGGAAGGTTCTGCTCAGACTACACTTGACGATGCTTCTT 1758
||||||||||||||||||| || ||| | | |||||| ||| |||||||||||||| |||
Sbjct 1541 TGAGGCATCTTGCATCTGTTGGCGAAAGCTATGCTCAAACTGCACTTGACGATGCTGCTT 1600
Query 1759 GGGGTCTCTGGCCAATGAATCCTTCGCAAGCATCGACTTCATCTACATA-TGTTCCTCCT 1817
|| |||| ||||| ||||| ||||| |||||||| ||||| |||||| | ||| ||||||
Sbjct 1601 GGAGTCTATGGCCGATGAACCCTTCACAAGCATCCACTTCTTCTACA-ACTGTACCTCCT 1659
Query 1818 GGTGCTGGAGGAAGAACAGGTGGTCTGCATCTAAGAACTGTCTCCCGTGCA-G-CAAAT- 1874
||| |||| ||||| ||||||||||||||||| |||||||| | | ||| | || ||
Sbjct 1660 GGTACTGGTGGAAGGACAGGTGGTCTGCATCTGAGAACTGTAT--CAAGCACGACAGATG 1717
Query 1875 -AA-CATGGCGAGTATACTAGCAATGGCCGAGACAGTAAGGGAAGTCCTCCCACATGTGC 1932
|| | |||| | ||||||||| ||||||||||| || ||||||||| | ||||| ||||
Sbjct 1718 AAAGCTTGGCAAATATACTAGCTATGGCCGAGACTGTGAGGGAAGTCATGCCACACGTGC 1777
Query 1933 CTGATGAAATAATTTTTCAGGACCTGCAAAGAACAAATTCTGTTTCTGTTACAGTGAACA 1992
| |||||||| ||||| ||||||||||| |||||||| |||||| |||||||||||||||
Sbjct 1778 CCGATGAAATTATTTTCCAGGACCTGCAGAGAACAAACTCTGTTGCTGTTACAGTGAACA 1837
Query 1993 ATCTTCTCCAGATGTGAAAATTGGTTTGCCTAAAAGTA-ATTA-GCAGTTCCATT-CGA- 2048
||||||||||||||||| || | |||| ||| | || | || ||| || |||| | |
Sbjct 1838 ATCTTCTCCAGATGTGATGATAG-TTTGTGTAATA-TATACTAAGCACTTGCATTTCAAC 1895
Query 2049 -TAAG--ATAGACGCATCA--GGAAACAT--CCTTGTCTTTTAAGT-TTGACTCACCACC 2100
| || ||||| || | || |||| ||||||| || |||| || || |||||||
Sbjct 1896 CTTAGGTATAGATTAATGATTGGGGACATATCCTTGTCCTT-AAGTCTTTACACACCACC 1954
Query 2101 ACA-CATTTAGAAGCGTTGTCT-GCTGTAAATAGGAGGCATTCTTGCAACAGACTTTGC- 2157
|| |||| |||| || | |||||||||| ||||| | | ||| || |||||
Sbjct 1955 -CAACATTCC-AAGC-TTCACCCGCTGTAAATATAAGGCAATGT-GCATCACTTTTTGCT 2010
Query 2158 A-AGAGTA-A-GAGGCTCTAGAGTAGAT-TT-TGTTCATTGCTCT-TGTGGGATAAATAA 2211
| |||| | | |||||||||| ||| | || ||||||||||||| | || || ||||||
Sbjct 2011 ATAGAGAAGAAGAGGCTCTAGTGTATAGCTTCTGTTCATTGCTCTCT-TGCGAAAAATAA 2069
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98158561365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5