BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51451.1 Length=537 Score E Sequences producing significant alignments: (Bits) Value Ahg495217 jgi|Araly1|495217|fgenesh2_kg.8__1033__AT5G51451.1 745 0.0 > Ahg495217 jgi|Araly1|495217|fgenesh2_kg.8__1033__AT5G51451.1 Length=528 Score = 745 bits (403), Expect = 0.0 Identities = 495/538 (92%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 1 CGAGGTTTATATGTCcttttccttttgttgtttctttctctctttttgactcatgtttgg 60 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1 CGAGGTTTAAATGTCCTTTTCCTTTTGTAGTTTCTTTCTCTCTTTTTGACTCATCTTTGG 60 Query 61 cttttcccatgagcttttcCAGCACATTCATCTGGATTGATTAAATAAAAAACTTGTTTA 120 ||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| Sbjct 61 CTTTTCCCATGAGCTTTTCCAGCACATTCATCTGGATTGATTAAA-AATACACTTGTTTA 119 Query 121 TTCTGTGATTTAATTCTTACATTCAAATACTTATGCGTGAACTTGCTCTTATTATATAGT 180 ||||| | |||||||||||| |||||||||||||| |||||||| ||||||||||||| | Sbjct 120 TTCTGGGGTTTAATTCTTACTTTCAAATACTTATGTGTGAACTTACTCTTATTATATAAT 179 Query 181 CTCCTACTACCTATTAAGTCTTTTAACGGTTCATAATCCTCTTAGTCGTTGAGCCTTGTA 240 | || ||||||| |||||| ||||||| |||||||||||| || ||||| |||||||| Sbjct 180 GT-CTTCTACCTACTAAGTCCTTTAACGTTTCATAATCCTCATAATCGTTAAGCCTTGTG 238 Query 241 TGACTGCTTCTGTTGTGACCAATGAGCTCAATCCATGTTGCTTCAATGATCCTTCTCTTG 300 |||||| ||||| | | | |||||||||||||||||||||||| | ||||||||||| Sbjct 239 TGACTGTTTCTG-T-T--CAAATGAGCTCAATCCATGTTGCTTC--T-TTCCTTCTCTTG 291 Query 301 TTTCTCTTCTTGCATCATT-CTGATTCTCGTCACCTCGACAATGTCCACATTACAGCGTC 359 |||||| ||||||||| || |||||||||||||||||||||||||||||||||||| ||| Sbjct 292 TTTCTCCTCTTGCATC-TTGCTGATTCTCGTCACCTCGACAATGTCCACATTACAGAGTC 350 Query 360 TCGGTTTTCACTCGTCAAGGATCAAAATGTTGTCTCTAGTTCGACATCTAAAGAACCCGT 419 ||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||| || Sbjct 351 TCGGTTTTCGCTTGTCAAGGATCAAAACGTTGTCTCTGGTTCGACATCTAAAGAACCGGT 410 Query 420 TAAAGTTTCTCGGTTTGTGCCGGGTCCATTGAAGCACCACCATCGTCGTCCACCGCTCTT 479 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 411 TAAAGTTTCTCGGTTTGTGCCGGGTGCAGTGAAGCACCACCATCGTCGTCCACCGCTCTT 470 Query 480 ATTTGCAGATTATCCGAAGCCGTCCACTCGGCCTCCACGCCATAACTGAAACCTCTCT 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 ATTTGCAGATTATCCGAAGCCGTCCACTCGGCCTCCACGCCATAACTGAAACCTCTCT 528 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19573817157 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5