BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G51451.1

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg495217 jgi|Araly1|495217|fgenesh2_kg.8__1033__AT5G51451.1         745    0.0  


> Ahg495217 jgi|Araly1|495217|fgenesh2_kg.8__1033__AT5G51451.1
Length=528

 Score =  745 bits (403),  Expect = 0.0
 Identities = 495/538 (92%), Gaps = 11/538 (2%)
 Strand=Plus/Plus

Query  1    CGAGGTTTATATGTCcttttccttttgttgtttctttctctctttttgactcatgtttgg  60
            ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct  1    CGAGGTTTAAATGTCCTTTTCCTTTTGTAGTTTCTTTCTCTCTTTTTGACTCATCTTTGG  60

Query  61   cttttcccatgagcttttcCAGCACATTCATCTGGATTGATTAAATAAAAAACTTGTTTA  120
            ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct  61   CTTTTCCCATGAGCTTTTCCAGCACATTCATCTGGATTGATTAAA-AATACACTTGTTTA  119

Query  121  TTCTGTGATTTAATTCTTACATTCAAATACTTATGCGTGAACTTGCTCTTATTATATAGT  180
            ||||| | |||||||||||| |||||||||||||| |||||||| ||||||||||||| |
Sbjct  120  TTCTGGGGTTTAATTCTTACTTTCAAATACTTATGTGTGAACTTACTCTTATTATATAAT  179

Query  181  CTCCTACTACCTATTAAGTCTTTTAACGGTTCATAATCCTCTTAGTCGTTGAGCCTTGTA  240
             | || ||||||| |||||| ||||||| |||||||||||| || ||||| |||||||| 
Sbjct  180  GT-CTTCTACCTACTAAGTCCTTTAACGTTTCATAATCCTCATAATCGTTAAGCCTTGTG  238

Query  241  TGACTGCTTCTGTTGTGACCAATGAGCTCAATCCATGTTGCTTCAATGATCCTTCTCTTG  300
            |||||| ||||| | |  | ||||||||||||||||||||||||  |  |||||||||||
Sbjct  239  TGACTGTTTCTG-T-T--CAAATGAGCTCAATCCATGTTGCTTC--T-TTCCTTCTCTTG  291

Query  301  TTTCTCTTCTTGCATCATT-CTGATTCTCGTCACCTCGACAATGTCCACATTACAGCGTC  359
            |||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct  292  TTTCTCCTCTTGCATC-TTGCTGATTCTCGTCACCTCGACAATGTCCACATTACAGAGTC  350

Query  360  TCGGTTTTCACTCGTCAAGGATCAAAATGTTGTCTCTAGTTCGACATCTAAAGAACCCGT  419
            ||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct  351  TCGGTTTTCGCTTGTCAAGGATCAAAACGTTGTCTCTGGTTCGACATCTAAAGAACCGGT  410

Query  420  TAAAGTTTCTCGGTTTGTGCCGGGTCCATTGAAGCACCACCATCGTCGTCCACCGCTCTT  479
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  411  TAAAGTTTCTCGGTTTGTGCCGGGTGCAGTGAAGCACCACCATCGTCGTCCACCGCTCTT  470

Query  480  ATTTGCAGATTATCCGAAGCCGTCCACTCGGCCTCCACGCCATAACTGAAACCTCTCT  537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  471  ATTTGCAGATTATCCGAAGCCGTCCACTCGGCCTCCACGCCATAACTGAAACCTCTCT  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19573817157


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5