BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51460.3
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495218 jgi|Araly1|495218|fgenesh2_kg.8__1034__AT5G51460.1 2340 0.0
> Ahg495218 jgi|Araly1|495218|fgenesh2_kg.8__1034__AT5G51460.1
Length=1645
Score = 2340 bits (1267), Expect = 0.0
Identities = 1445/1530 (94%), Gaps = 16/1530 (1%)
Strand=Plus/Plus
Query 56 GCATCTTCATTTCAGGGTCTATATTTCTCTGAGGAATTGGATTCTTATAGAAGTTAAACC 115
|||| ||| | |||| |||||| ||||||||||||| ||||| ||| |||||| |||||
Sbjct 121 GCAT-TTC-TCTCAGTGTCTATTTTTCTCTGAGGAAGAGGATTTTTAGAGAAGTGAAACC 178
Query 116 GCAGAGCTTCTTCTATCCAATAGTCCTCTGAGAATCGTCGATATAGTTTGCTGATA-TAG 174
| |||||||||||||| ||| | ||||||||||| | | |||||| | | | ||| | |
Sbjct 179 GTAGAGCTTCTTCTATTCAAGAATCCTCTGAGAAACTTTGATATA-TATATTTATAGTTG 237
Query 175 TTGTTATGGACATGAAATCTGGTCACTCGTCTCCTGTAATGACTGATTCTCCACCAATAA 234
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 238 TTGTTATGGACATAAAATCTGGTCACTCGTCTCCTGTAATGACTGATTCTCCACCGATAA 297
Query 235 GCAACTCAAGATTAACCATTCGTCAGAATAGACTTCCTTACTCATCAGCAGCAGCCACGG 294
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 298 GCAACTCAAGATTAACCATTCGTCAGAACAGACTCCCTTACTCATCAGCAGCAGCCACGG 357
Query 295 CTATCTCACAGAACAACAATCTCTTACTAACCGTTCCAAGAAAGAAAACTGGGATCCTTG 354
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 CTATCTCACAGAACAGCAATCTCTTACTAACCGTTCCAAGAAAGAAAACTGGGATCCTTG 417
Query 355 ATGATGTTAAGTCTAATGGTTGGCTTGATGCGATGAAATCTTCTTCTCCTCCTCCTACAA 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 ATGATGTTAAGTCTAATGGTTGGCTTGATGCGATGAAATCTTCTTCTCCTCCTCCAACAA 477
Query 415 TACTTAACAAAGATAACTTAAGCAATGATGCTACGGATATGACTTATCGCGAATGGATGC 474
||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||
Sbjct 478 TACTTAACAAAGATAACTTAACCAGTGATGCTGCGGATATGACTTATCGCGAATGGACGC 537
Query 475 AGCTCAAGTATCCATCAGCTCTTACCTCTTTTGAGAAAATCATGAGTTTTGCAAAAGGCA 534
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 538 AGCTCAAGTATCCATCAGCTCTTACTTCTTTTGAGAAAATCATGAGTTTTGCAAAGGGTA 597
Query 535 AAAGAATAGCATTGTTTCTTGATTATGACGGGACACTTTCGCCTATTGTTGAGGAACCTG 594
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 598 AAAGAATAGCATTGTTTCTTGATTATGATGGGACACTTTCGCCTATAGTTGAGGAACCTG 657
Query 595 ATTGTGCATACATGTCAAGTGCTATGCGTAGTGCAGTGCAAAATGTTGCCAAGTATTTCC 654
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 658 ATTGCGCATACATGTCAAGTGCTATGCGTAGTGCAGTGCAAAACGTTGCCAAGTATTTCC 717
Query 655 CTACCGCGATCATTAGTGGAAGAAGCCGGGATAAGGTGTATGAGTTTGTTAATTTGAGTG 714
| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct 718 CAACCGCGATCATTAGTGGAAGAAGCCGTGATAAGGTGTATGAGTTTGTTAGTTTAAGTG 777
Query 715 AACTTTATTACGCCGGAAGCCATGGAATGGACATCATGAGTCCCGCAGGAGAATCTTTAA 774
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 778 AACTTTATTACGCTGGAAGCCATGGAATGGACATCATGAGTCCCGCAGGAGAATCTCTAA 837
Query 775 ACCATGAACATAGCCGTACTGTATCAGTTTACGAACAGGGGAAAGATGTAAATCTATTCC 834
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 838 ACCACGAACATAGCCGTACTGTATCAGTTAACGAACAGGGGAAAGATGTAAATCTATTCC 897
Query 835 AGCCTGCTAGCGAGTTTCTCCCGATGATCGATAAGGTGCTTTGTTCTCTTATAGAGAGTA 894
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 898 AGCCTGCTAGCGAGTTTCTACCGATGATTGATAAGGTGCTTTGTTCGCTTATAGAGAGTA 957
Query 895 CAAAAGATATCAAAGGGGTAAAAGTAGAAGACAACAAGTTCTGCATCTCTGTGCATTACC 954
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 958 CAAAAGATATCAAAGGGGTAAAAGTAGAAGACAACAAGTTCTGTATCTCTGTGCATTACC 1017
Query 955 GCAATGTAGAAGAAAAGAACTGGACATTGGTTGCACAGTGTGTAGATGATGTCATCAGAA 1014
|||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1018 GCAACGTAGAGGAAAAGAACTGGGCATTGGTTGCACAGTGTGTTGATGATGTCATCAGAA 1077
Query 1015 CATATCCAAAACTACGGCTAACACATGGCCGGAAGGTTTTAGAGATCCGTCCTGTGATTG 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CATATCCAAAACTACGGCTAACACATGGCCGGAAGGTTTTAGAGATCCGTCCTGTGATTG 1137
Query 1075 ACTGGGACAAAGGGAAAGCTGTGACATTTCTACTTGAATCACTCGGCCTAAACAACTGTG 1134
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1138 ACTGGGACAAAGGAAAAGCTGTGACATTCCTACTTGAATCTCTCGGCCTAAACAACTGTG 1197
Query 1135 AGGATGTTCTTCCAATCTATGTTGGGGATGATCGAACAGACGAAGATGCATTTAAGGTAC 1194
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1198 AGGATGTTCTTCCAATCTATGTCGGGGATGATCGAACAGATGAAGATGCATTTAAGGTAT 1257
Query 1195 TACGAGATGGACCAAACCACGGTTATGGTATATTAGTCTCTGCTGTGCCTAAAGACAGCA 1254
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 TACGAGATGGACCAAACCACGGTTATGGTATATTAGTCTCTGCTGTGCCCAAAGACAGCA 1317
Query 1255 ATGCCTTTTACTCGCTTCGTGACCCGTCTGAGGTGATGGAGTTTCTGAAGTCATTGGTGA 1314
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1318 ATGCCTTTTACTCGCTTCGTGACCCCTCTGAGGTGATGGAGTTTCTGAAGTCATTGGTGA 1377
Query 1315 CATGGAAGAGATCAATGGGTTAAAGTAGAAGAAGAAGATGTAGAAGAAAAGTGGTTAACG 1374
||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||
Sbjct 1378 CATGGAAGAGATCAATGGGTTAA-GTAGA-GAAGAAGAAGTAGAAGAAA-GTGGTTAACG 1434
Query 1375 TTAATATATATTACAAATATGCAAGTTA----GAGGTTTATTGTTACTTTTCGGCTTTAT 1430
||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1435 TTAATGTATATTACAAATATGCAAGTTAATTAGAGGATTATTGTTACTTTTCGGCTTTAT 1494
Query 1431 ACAAAAACTACCGTTGAGATTTAACTTAACGGTATCGGAGGAGAGATCACATGATGGCTT 1490
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1495 ACAAA---TACCGTTGAGATTTAACTTAACGGTATCGGAGGAGAGATCACATGAAGGCTT 1551
Query 1491 AAAACATGCCGGAGATACTTTTTCCGACCAATCTCTTTATCTTCTACAACTGTAAATTCC 1550
|||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||
Sbjct 1552 AAAACATGCCGGAGATCCTTTTTCCGATCAATCTCTTTATTTTCTATAACTGTAAATTCC 1611
Query 1551 TCCATCTCCGGATTAATTCAAGA-CATTTT 1579
||||||||||||||||||||| | ||||||
Sbjct 1612 TCCATCTCCGGATTAATTCAA-ATCATTTT 1640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59230330975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5