BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51480.1
Length=2266
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949695 jgi|Araly1|949695|scaffold_801582.1 2791 0.0
Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1 1611 0.0
> Ahg949695 jgi|Araly1|949695|scaffold_801582.1
Length=1825
Score = 2791 bits (1511), Expect = 0.0
Identities = 1719/1821 (94%), Gaps = 7/1821 (0%)
Strand=Plus/Plus
Query 168 aaaaTCACTGAGATTATTACAAATGGCGGCTACTGAttttttcttcgctttcgtcttctc 227
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AAAATCACTGAGATTA-AACAAATGGCGGCTACTGATTTTTTCTTCGCTTTCGTCTTCTC 64
Query 228 tttcgctcttatcttcggcttctctttcgctGGTGATCCTTACGTCTCTTACGATTTCAC 287
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 65 CTTCGCTCTTCTCTTCGGCTTCTCTTTCGCTGGTGATCCTTACGTATCTTACGATTTCAG 124
Query 288 CCTCTCCTACATCACTGCTTCTCCTCTCGGTGTTCCTCAACAGGTTATAGCAGTCAATGG 347
| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TGTTTCGTACATCACAGCTTCTCCTCTCGGTGTTCCTCAACAGGTTATAGCAGTCAATGG 184
Query 348 GAAATTTCCAGGTCCTGTGATTAACGCTACGACAAACTACAATGTTCATGTTAACGTACT 407
|||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
Sbjct 185 GAAATTTCCAGGTCCTGTGATTAATGCTACTACAAACTACAATGTTGATGTTAACGTATT 244
Query 408 CAATCATTTGGATGAGCCTCTTTTACTTACTTGGCCTGGTGTTCAGATGAGGCGTAACTC 467
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 245 CAATCATTTGGATGAGCCTCTCTTACTTACTTGGCCTGGTGTTCAGATGCGGCGTAACTC 304
Query 468 GTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGAATTGGAACTTCACTTA 527
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 305 GTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGAAATGGAACTTCACTTA 364
Query 528 TGATTTTCAGTTGAAAGATCAGATTGGAAGTTATTTCTACTCTCCTTCACTTAACTTTCA 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 365 TGATTTTCAGTTGAAAGATCAGATTGGAAGTTATTTCTACTCTCCTTCACTTAACTTCCA 424
Query 588 GAGAGCCTCTGGTGGTTTTGGTGCACTCATAATCAATAACAGAGACCTTGTTCCTATTCC 647
|||||||||||||||||||||| || |||||||||||||| ||||||| |||||||| ||
Sbjct 425 GAGAGCCTCTGGTGGTTTTGGTTCAATCATAATCAATAACCGAGACCTCGTTCCTATCCC 484
Query 648 GTTCACTGAGCCTGATGGTGAAATCATCTTTATTATTGGTGATTGGTATACTCAGAACCA 707
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 GTTCACTAAGCCTGATGGTGAAATCATCTTTATTATTGGTGATTGGTATACTCAGAACCA 544
Query 708 TACAGCTTTAAGGAGGATACTTGACTCTGGTAAAGAACTTGGGATGCCCGATGGAGTACT 767
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 545 TACAGCTTTAAGGAGGATACTTGACTCTGGTAAAGAACTTGGGATGCCGGATGGAGTGCT 604
Query 768 CATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTACCTGATGGAATTGAACATGA 827
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 605 CATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTTCCTGATGGAATTGAACATGA 664
Query 828 AACCGTTAATGTTGATCCAGGGAAAACATACAGGATCCGTGTTCACAATGTTGGTATCTC 887
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 665 AACCGTTAATGTTGATCCAGGGAAGACATACAGGATCCGCGTTCACAATGTTGGTATCTC 724
Query 888 GACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGCTCTTGATTGAGACTGAGGGTCG 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGCTCTTGATTGAGACTGAGGGTCG 784
Query 948 CTACACCTCCCAAATGAACTTCACCGATTTTGATGTTCATGTGGGACAGTCTTATTCTTT 1007
||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 785 CTACACCTCCCAAATAAACTTCACCGATTTCGATATTCATGTGGGACAGTCTTATTCTTT 844
Query 1008 CCTGGTAACCATGGACCAAAACGCCACAAGTGACTACTACATTGTGGCGAGTGCTAGATT 1067
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 845 CTTGGTAACCATGGACCAAAACGCCACAAGTGATTACTACATTGTGGCGAGTGCTAGATT 904
Query 1068 TGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTGGCATTCTCCATTATTCCAATTC 1127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 TGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTGGCATTCTCCATTATTCCAATTC 964
Query 1128 CAAAGGACCTGCTTCTGGTCCTTTGCCAGTTTCAGCAACTGATGTTAATCACCCTTGGTC 1187
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 965 CAAAGGACCTGCTTCTGGTCCTTTGCCAGTTCCAGCAACTGATGTTTCTCACCCTTGGTC 1024
Query 1188 TGCAATGAACCAACCGAGAGCCATAAAGCAAAACACATCTGCAAGTGGAGCTCGTCCAAA 1247
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1025 CGCAATGAACCAACCAAGAGCCATAAAGCAAAACACATCTGCAGGTGGAGCTCGTCCAAA 1084
Query 1248 TCCGCAGGGATCATTTCACTACGGACAGATCAACATTACAAGAACATACATCTTGAGGAG 1307
|||||| ||||||||||||||||||||||| || || ||||| |||||||||||||||||
Sbjct 1085 TCCGCAAGGATCATTTCACTACGGACAGATAAATATCACAAGCACATACATCTTGAGGAG 1144
Query 1308 TTTGCCTCCAACAAAAATCAATGGGAAACTTCGTGCTACACTTAATGGAATTTCATTTGT 1367
||||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||
Sbjct 1145 TTTGCCTCCAACAGAAATCAATGGGAAAATTCGTGCTACGCTTAATGGGATTTCATTTGT 1204
Query 1368 CAATCCAAGCACCCCCATGAGGCTTGCGGATGACCATAAAGTGAAAGGAGATTATATGTT 1427
||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | |
Sbjct 1205 CAATCCAAGCACCCCCATGAGGCTTGCAGATCACCATAAAGTGAAAGGAGATTATAAGCT 1264
Query 1428 AGATTTTCCAGACAGACCACTTGATGAAAAACTTCCACGTTTGTCCAGCTCTATCATCAA 1487
|||||| |||||||||||||||||||||| || || |||| || |||||||||||||||
Sbjct 1265 AGATTTCCCAGACAGACCACTTGATGAAAGACATCAACGTATGGACAGCTCTATCATCAA 1324
Query 1488 CGCAACATACAAGGGCTTTATACAAGTTATCTTCCAGAACAATGACACCAAAATCCAGAG 1547
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325 CGCATCATACAAGGGCTTTATACAAGTTATCTTCCAGAACAATGACACCAAAATCCAGAG 1384
Query 1548 CTTCCATATTGATGGATATGCATTTTACGTGGTTGCGATGGACTTTGGTATATGGTCAGA 1607
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1385 CTTCCATATTGATGGATATTCATTTTACGTGGTTGCAATGGACTTTGGTATATGGTCAGA 1444
Query 1608 AGACAGAAACAG-TTCTTATAACAACTGGGATGCAGTAGCACGAAGCACGGTGGAGGTCT 1666
||||||||| || ||| |||||||||||||||||| | |||||||||||| | ||||| |
Sbjct 1445 AGACAGAAA-AGGTTCATATAACAACTGGGATGCAATTGCACGAAGCACGATCGAGGTTT 1503
Query 1667 ATCCAGGAGCATGGACTGCTGTACTTATTTCTCTCGATAATGTTGGAGTTTGGAATATCC 1726
||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| || |
Sbjct 1504 ATCCAGGGGCATGGACTGCTGTACTTGTTTCCCTCGATAATGTTGGAGTTTGGAACATTC 1563
Query 1727 GGGTTGAGAATCTTGACAGATGGTATCTTGGCCAAGAAACATACATGCGAATTATAAACC 1786
| || |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1564 GAGTAGAGAATCTTGACAGATGGTATCTTGGTGAAGAAACATACATGCGAATTGTAAACC 1623
Query 1787 CTGAGGAAAACGGAAGTACGGAAATGGATCCGCCTGAAAATGTTATGTATTGTGGTGCTC 1846
| ||||||||||||||||| ||||||||||||||| |||||||| |||| ||||||||||
Sbjct 1624 CCGAGGAAAACGGAAGTACAGAAATGGATCCGCCTCAAAATGTTCTGTACTGTGGTGCTC 1683
Query 1847 TTCAGGCCATGCAAAAGGAACAACATCACAGCTCGGCCACAAAATCAATGAC-AAATGGA 1905
|||||||||||||||||||||||||||||||||| || || |||||| || |||||||
Sbjct 1684 TTCAGGCCATGCAAAAGGAACAACATCACAGCTCTGCTGGAACATCAAT-ACTAAATGGA 1742
Query 1906 CAGTTGATACTAATTTTCAGCATGATGATGGTTTTGCTCTCCTCGTTTTC-GTCCTTTTG 1964
||||||| |||||||||||||||||||||| |||||||| ||||| |||| | |||||||
Sbjct 1743 CAGTTGAAACTAATTTTCAGCATGATGATGTTTTTGCTCGCCTCGGTTTCAG-CCTTTTG 1801
Query 1965 CTGAGTCTGTTCCATCATTTA 1985
|||||||| || |||||||||
Sbjct 1802 CTGAGTCTCTTGCATCATTTA 1822
> Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1
Length=2097
Score = 1611 bits (872), Expect = 0.0
Identities = 1445/1721 (84%), Gaps = 42/1721 (2%)
Strand=Plus/Plus
Query 217 ttcgtcttct-ctttcgctcttatcttcggcttctctttcgctGG-TGATCCTTACGTCT 274
||| || ||| |||| |||||| ||| |||| | |||||||| || || |||| |||||
Sbjct 145 TTCCTCCTCTGCTTT-GCTCTTCTCTCCGGCGTGTCTTTCGC-GGCGGACCCTTTCGTCT 202
Query 275 CTTACGATTTCACCCTCTCCTACATCACTGCTTCTCCTCTCGGTGTTCCTCAACAGGTTA 334
| ||||| |||| | || |||||||| ||||| || ||||| ||||||||||||||||
Sbjct 203 CCTACGACTTCAGGGTTTCTTACATCACCGCTTCCCCCCTCGGCGTTCCTCAACAGGTTA 262
Query 335 TAGCAGTCAATGGGAAATTTCCAGGTCCTGTGATTAACGCTACGACAAACTACAATGTTC 394
|||| ||||||||| | |||||||| ||| || |||| || || || ||||||||||||
Sbjct 263 TAGCTGTCAATGGGCAGTTTCCAGGACCTCTGCTTAATGCCACTACCAACTACAATGTTG 322
Query 395 ATGTTAACGTACTCAATCATTTGGATGAGCCTCTTTTACTT-ACTTGGCCTGGTGTTCAG 453
||||||||| |||||||||||||||||||||| | ||| ||||||||||| | ||
Sbjct 323 TTGTTAACGTTTTCAATCATTTGGATGAGCCTCTCCT-CTTGACTTGGCCTGGCATCCAA 381
Query 454 ATGAGGCGTAACTCGTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGA-A 512
||| ||||||||||||||||||||||||||||||| |||||||| || ||||| || | |
Sbjct 382 ATGCGGCGTAACTCGTGGCAAGACGGTGTTCTTGGCACAAACTGCCCTATTCCTCCCAGA 441
Query 513 TTGGAACTTCACTTATGATTTTC-AGTTGAAAGATCAGATTGGAAG-TTATTTCTACTCT 570
|||||||| ||||| | |||| || |||| ||||| |||||||| || |||||||||
Sbjct 442 -TGGAACTTTACTTACCAATTTCAAG-TGAAGGATCAAATTGGAAGCTT-TTTCTACTCC 498
Query 571 CCTTCACTTAACTTTCAGAGAGCCTCTGGTGGTTTTGGTGCAC-TCATAATCAATAACAG 629
|||||||| |||||||||||||| ||||| ||||||||| | | || | || |||||| |
Sbjct 499 CCTTCACTCAACTTTCAGAGAGCATCTGGGGGTTTTGGT-CCCATCGTGATTAATAACCG 557
Query 630 AGACCTTGTTCCTATTCCGTTCACTGAGCCTGATGGTGAAATCATCTTTATTATTGGTGA 689
||| || ||||||| || ||| | ||||||| || ||| ||||||| |||||||||||
Sbjct 558 TGACATTATTCCTATCCCTTTCCCACAGCCTGACGGCGAACTCATCTTCATTATTGGTGA 617
Query 690 TTGGTATACTCAGAACCATACAGCTTTAAGGAGGATACTTGACTCTGGTAAAGAACTTGG 749
|||||| |||||| |||||| ||| |||||||| ||||| |||||||| |||||||||||
Sbjct 618 TTGGTACACTCAGGACCATAAAGCATTAAGGAGAATACTCGACTCTGGGAAAGAACTTGG 677
Query 750 GATGCCCGATGGAGTACTCATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTACC 809
|||||| |||||||| |||||||||||||| ||||||| ||||||||| || ||||||||
Sbjct 678 GATGCCAGATGGAGTCCTCATCAATGGGAAGGGTCCTTACAAGTACAACAGTAGTGTACC 737
Query 810 TGATGGAATTGA--ACATGAAACCGTTAATGTTGATCCAGGGAAAACATACAGGATCCGT 867
|||||||||||| || | |||| || ||||||| ||||||||||||||||| ||||||
Sbjct 738 TGATGGAATTGATTAC-T-TAACCTTTCATGTTGAGCCAGGGAAAACATACAGAATCCGT 795
Query 868 GTTCACAATGTTGGTATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGCTC 927
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 796 GTTCACAATGTTGGGATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAATTTGCTT 855
Query 928 TTGATTGAGACTGAGGGTCGCTACACCTCCCAAATGAACTTCACCGATTTTGATGTTCAT 987
||| | || || ||||||| ||| ||||| || |||||| || |||||||||||||||
Sbjct 856 TTGGTAGAAACCGAGGGTCACTATACCTCACAGGCGAACTTTACTGATTTTGATGTTCAT 915
Query 988 GTGGGACAGTCTTATTCTTTCCTGGTAACCATGGACCAAAACGCCACAAGTGACTACTAC 1047
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 916 GTAGGACAGTCTTATTCTTTCTTGGTAACCATGGACCAAAACGCCACAAGTGACTACTAC 975
Query 1048 ATTGTGGCGAGTGCTAGATTTGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTGGC 1107
||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 976 ATTGTTGCCAGTGCTAGATTTGTGAATGAAACAGTGTGGCAAAGAGTCACTGGTGTTGCC 1035
Query 1108 ATTCTCCATTATTCCAATTCCAAAGGACCTGCTTCTGGTCCTTTGCCAGTTTCAGCAACT 1167
|||||||||||||| |||||||||||||||| |||||||||| | |||||| || |||
Sbjct 1036 ATTCTCCATTATTCTAATTCCAAAGGACCTGTTTCTGGTCCTCTACCAGTTCCAAAAACC 1095
Query 1168 GATGTTAATCA-CCCTTGGTCTGCAATGAACCAACCGAGAG-CCATAAAGCAAAACACAT 1225
|||||| | | ||| ||||| ||||||||||| |||| || |||| | |||||||||||
Sbjct 1096 GATGTTTCT-AGCCCATGGTCAGCAATGAACCAGCCGA-AGGCCATCAGGCAAAACACAT 1153
Query 1226 CTGCAAGTGGAGCTCGTCCAAATCCGCAGGGATCATTTCACTACGGACAGATCAACATTA 1285
|||| |||||||||||||||||||||||||||||||||||||| || || || ||||| |
Sbjct 1154 CTGCTAGTGGAGCTCGTCCAAATCCGCAGGGATCATTTCACTATGGTCAAATAAACATCA 1213
Query 1286 C-AAGAACATACATCTTGAGGAGTTTGCCTCCAACAAAAATCAATGGGAAACTTCGTGCT 1344
| || | ||||||| ||||| |||||||||||||||| ||| || ||| ||| ||||||
Sbjct 1214 CTAACA-CATACATTTTGAGAAGTTTGCCTCCAACAACAATTAACGGGGCACTACGTGCT 1272
Query 1345 ACACTTAATGGAATTTCATTTGTCAATCCAAGCACCCCCA-TGAGGCTTGCGGAT-GACC 1402
||||||||||| ||||||||||| ||||||||||| || | |||||||||||||| | |
Sbjct 1273 ACACTTAATGGGATTTCATTTGTGAATCCAAGCACTCC-AGTGAGGCTTGCGGATCG-CA 1330
Query 1403 ATAAAGTGAAAGGAGATTATATGTTAGATTTTCCAGACAGACCACTTGATGAAAAACTTC 1462
||||||||||||||| ||||| | | || || || || ||||| || | | | | || |
Sbjct 1331 ATAAAGTGAAAGGAGCTTATAAGCTGGACTTCCCTGATAGACCTTTT-A-GTAGACCT-C 1387
Query 1463 CACGTTTGTCCAGCTCTATCATCAACGCAACATACAAGGGCTTTATACAAGTTATCTTCC 1522
| |||||| ||| ||||| ||||||||||||||||||||||||||||||||| | ||||
Sbjct 1388 CTCGTTTGGACAGATCTATGATCAACGCAACATACAAGGGCTTTATACAAGTTGTTTTCC 1447
Query 1523 AGAACAATGACACCAAAATCCAGAGCTTCCATATTGATGGATATGCATTTTACGTGGTTG 1582
||||||| |||||||| ||||||||||||||| ||||||||||| |||||| || ||||
Sbjct 1448 AGAACAACGACACCAAGATCCAGAGCTTCCATGTTGATGGATATTCATTTTTTGTTGTTG 1507
Query 1583 CGATGGACTTTGGTATATGGTCAGAAGACAGAAACAGTTCTTATAACAACTGGGATGC-A 1641
||||||||||||||| ||||||||||||| ||| |||| |||||||||| ||||| |
Sbjct 1508 GGATGGACTTTGGTATCTGGTCAGAAGACAAAAAGGGTTCATATAACAACTATGATGCCA 1567
Query 1642 GTAGCACGAAGCACGGTGGAGGTCTATCCAGGAGCATGGACTGCTGTACTTATTTCTCTC 1701
| || ||||||| | |||| || || || | |||||| |||||||||||||| ||
Sbjct 1568 -TCTCAAGAAGCACAATCAAGGTATACCCTGGGGGATGGACGGCTGTACTTATTTCCCTT 1626
Query 1702 GATAATGTTGGAGTTTGGAATATCCGGGTTGAGAATCTTGACAGATGGTATCTTGGCCAA 1761
||||| |||||||||||||| || || || |||||||||||||||||||||||||| ||
Sbjct 1627 GATAACGTTGGAGTTTGGAACATTCGAGTAGAGAATCTTGACAGATGGTATCTTGGTGAA 1686
Query 1762 GAAACATACATGCGAATTATAAACCCTGAGGAAAACGGAA-GTACGGAAATGGATCCGCC 1820
||||| || ||||| || | |||||| || || | |||| | || || |||||||| ||
Sbjct 1687 GAAACTTATATGCGGATCACAAACCCCGAAGAGGATGGAAAG-ACAGAGATGGATCCTCC 1745
Query 1821 TGAAAATGTTATGTATTGTGGTGCTCTTCAGGCCATGCAAAAGGAACAACATCACAGCTC 1880
||| ||||| | || |||||||| ||| || | |||| ||||||||||| | || |||
Sbjct 1746 TGACAATGTCCTTTACTGTGGTGCCCTTAAGAACTTGCAGAAGGAACAACA-C-CA-CTC 1802
Query 1881 GGCCACAAAATCAATGAC-AAATGGACAGTTGATA-CTAAT 1919
|| ||| ||| || || ||||||||| |||| | |||||
Sbjct 1803 AGCTGCAACATCTAT-ACTAAATGGACACTTGA-AGCTAAT 1841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85322148800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5