BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G51480.1 Length=2266 Score E Sequences producing significant alignments: (Bits) Value Ahg949695 jgi|Araly1|949695|scaffold_801582.1 2791 0.0 Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1 1611 0.0 > Ahg949695 jgi|Araly1|949695|scaffold_801582.1 Length=1825 Score = 2791 bits (1511), Expect = 0.0 Identities = 1719/1821 (94%), Gaps = 7/1821 (0%) Strand=Plus/Plus Query 168 aaaaTCACTGAGATTATTACAAATGGCGGCTACTGAttttttcttcgctttcgtcttctc 227 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 6 AAAATCACTGAGATTA-AACAAATGGCGGCTACTGATTTTTTCTTCGCTTTCGTCTTCTC 64 Query 228 tttcgctcttatcttcggcttctctttcgctGGTGATCCTTACGTCTCTTACGATTTCAC 287 ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 65 CTTCGCTCTTCTCTTCGGCTTCTCTTTCGCTGGTGATCCTTACGTATCTTACGATTTCAG 124 Query 288 CCTCTCCTACATCACTGCTTCTCCTCTCGGTGTTCCTCAACAGGTTATAGCAGTCAATGG 347 | || |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 TGTTTCGTACATCACAGCTTCTCCTCTCGGTGTTCCTCAACAGGTTATAGCAGTCAATGG 184 Query 348 GAAATTTCCAGGTCCTGTGATTAACGCTACGACAAACTACAATGTTCATGTTAACGTACT 407 |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| | Sbjct 185 GAAATTTCCAGGTCCTGTGATTAATGCTACTACAAACTACAATGTTGATGTTAACGTATT 244 Query 408 CAATCATTTGGATGAGCCTCTTTTACTTACTTGGCCTGGTGTTCAGATGAGGCGTAACTC 467 ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| Sbjct 245 CAATCATTTGGATGAGCCTCTCTTACTTACTTGGCCTGGTGTTCAGATGCGGCGTAACTC 304 Query 468 GTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGAATTGGAACTTCACTTA 527 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 305 GTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGAAATGGAACTTCACTTA 364 Query 528 TGATTTTCAGTTGAAAGATCAGATTGGAAGTTATTTCTACTCTCCTTCACTTAACTTTCA 587 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 365 TGATTTTCAGTTGAAAGATCAGATTGGAAGTTATTTCTACTCTCCTTCACTTAACTTCCA 424 Query 588 GAGAGCCTCTGGTGGTTTTGGTGCACTCATAATCAATAACAGAGACCTTGTTCCTATTCC 647 |||||||||||||||||||||| || |||||||||||||| ||||||| |||||||| || Sbjct 425 GAGAGCCTCTGGTGGTTTTGGTTCAATCATAATCAATAACCGAGACCTCGTTCCTATCCC 484 Query 648 GTTCACTGAGCCTGATGGTGAAATCATCTTTATTATTGGTGATTGGTATACTCAGAACCA 707 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 GTTCACTAAGCCTGATGGTGAAATCATCTTTATTATTGGTGATTGGTATACTCAGAACCA 544 Query 708 TACAGCTTTAAGGAGGATACTTGACTCTGGTAAAGAACTTGGGATGCCCGATGGAGTACT 767 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 545 TACAGCTTTAAGGAGGATACTTGACTCTGGTAAAGAACTTGGGATGCCGGATGGAGTGCT 604 Query 768 CATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTACCTGATGGAATTGAACATGA 827 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 605 CATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTTCCTGATGGAATTGAACATGA 664 Query 828 AACCGTTAATGTTGATCCAGGGAAAACATACAGGATCCGTGTTCACAATGTTGGTATCTC 887 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 665 AACCGTTAATGTTGATCCAGGGAAGACATACAGGATCCGCGTTCACAATGTTGGTATCTC 724 Query 888 GACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGCTCTTGATTGAGACTGAGGGTCG 947 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 725 GACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGCTCTTGATTGAGACTGAGGGTCG 784 Query 948 CTACACCTCCCAAATGAACTTCACCGATTTTGATGTTCATGTGGGACAGTCTTATTCTTT 1007 ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 785 CTACACCTCCCAAATAAACTTCACCGATTTCGATATTCATGTGGGACAGTCTTATTCTTT 844 Query 1008 CCTGGTAACCATGGACCAAAACGCCACAAGTGACTACTACATTGTGGCGAGTGCTAGATT 1067 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 845 CTTGGTAACCATGGACCAAAACGCCACAAGTGATTACTACATTGTGGCGAGTGCTAGATT 904 Query 1068 TGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTGGCATTCTCCATTATTCCAATTC 1127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 TGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTGGCATTCTCCATTATTCCAATTC 964 Query 1128 CAAAGGACCTGCTTCTGGTCCTTTGCCAGTTTCAGCAACTGATGTTAATCACCCTTGGTC 1187 ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 965 CAAAGGACCTGCTTCTGGTCCTTTGCCAGTTCCAGCAACTGATGTTTCTCACCCTTGGTC 1024 Query 1188 TGCAATGAACCAACCGAGAGCCATAAAGCAAAACACATCTGCAAGTGGAGCTCGTCCAAA 1247 |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1025 CGCAATGAACCAACCAAGAGCCATAAAGCAAAACACATCTGCAGGTGGAGCTCGTCCAAA 1084 Query 1248 TCCGCAGGGATCATTTCACTACGGACAGATCAACATTACAAGAACATACATCTTGAGGAG 1307 |||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||| Sbjct 1085 TCCGCAAGGATCATTTCACTACGGACAGATAAATATCACAAGCACATACATCTTGAGGAG 1144 Query 1308 TTTGCCTCCAACAAAAATCAATGGGAAACTTCGTGCTACACTTAATGGAATTTCATTTGT 1367 ||||||||||||| |||||||||||||| |||||||||| |||||||| ||||||||||| Sbjct 1145 TTTGCCTCCAACAGAAATCAATGGGAAAATTCGTGCTACGCTTAATGGGATTTCATTTGT 1204 Query 1368 CAATCCAAGCACCCCCATGAGGCTTGCGGATGACCATAAAGTGAAAGGAGATTATATGTT 1427 ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | | Sbjct 1205 CAATCCAAGCACCCCCATGAGGCTTGCAGATCACCATAAAGTGAAAGGAGATTATAAGCT 1264 Query 1428 AGATTTTCCAGACAGACCACTTGATGAAAAACTTCCACGTTTGTCCAGCTCTATCATCAA 1487 |||||| |||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 1265 AGATTTCCCAGACAGACCACTTGATGAAAGACATCAACGTATGGACAGCTCTATCATCAA 1324 Query 1488 CGCAACATACAAGGGCTTTATACAAGTTATCTTCCAGAACAATGACACCAAAATCCAGAG 1547 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1325 CGCATCATACAAGGGCTTTATACAAGTTATCTTCCAGAACAATGACACCAAAATCCAGAG 1384 Query 1548 CTTCCATATTGATGGATATGCATTTTACGTGGTTGCGATGGACTTTGGTATATGGTCAGA 1607 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1385 CTTCCATATTGATGGATATTCATTTTACGTGGTTGCAATGGACTTTGGTATATGGTCAGA 1444 Query 1608 AGACAGAAACAG-TTCTTATAACAACTGGGATGCAGTAGCACGAAGCACGGTGGAGGTCT 1666 ||||||||| || ||| |||||||||||||||||| | |||||||||||| | ||||| | Sbjct 1445 AGACAGAAA-AGGTTCATATAACAACTGGGATGCAATTGCACGAAGCACGATCGAGGTTT 1503 Query 1667 ATCCAGGAGCATGGACTGCTGTACTTATTTCTCTCGATAATGTTGGAGTTTGGAATATCC 1726 ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| || | Sbjct 1504 ATCCAGGGGCATGGACTGCTGTACTTGTTTCCCTCGATAATGTTGGAGTTTGGAACATTC 1563 Query 1727 GGGTTGAGAATCTTGACAGATGGTATCTTGGCCAAGAAACATACATGCGAATTATAAACC 1786 | || |||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 1564 GAGTAGAGAATCTTGACAGATGGTATCTTGGTGAAGAAACATACATGCGAATTGTAAACC 1623 Query 1787 CTGAGGAAAACGGAAGTACGGAAATGGATCCGCCTGAAAATGTTATGTATTGTGGTGCTC 1846 | ||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||||| Sbjct 1624 CCGAGGAAAACGGAAGTACAGAAATGGATCCGCCTCAAAATGTTCTGTACTGTGGTGCTC 1683 Query 1847 TTCAGGCCATGCAAAAGGAACAACATCACAGCTCGGCCACAAAATCAATGAC-AAATGGA 1905 |||||||||||||||||||||||||||||||||| || || |||||| || ||||||| Sbjct 1684 TTCAGGCCATGCAAAAGGAACAACATCACAGCTCTGCTGGAACATCAAT-ACTAAATGGA 1742 Query 1906 CAGTTGATACTAATTTTCAGCATGATGATGGTTTTGCTCTCCTCGTTTTC-GTCCTTTTG 1964 ||||||| |||||||||||||||||||||| |||||||| ||||| |||| | ||||||| Sbjct 1743 CAGTTGAAACTAATTTTCAGCATGATGATGTTTTTGCTCGCCTCGGTTTCAG-CCTTTTG 1801 Query 1965 CTGAGTCTGTTCCATCATTTA 1985 |||||||| || ||||||||| Sbjct 1802 CTGAGTCTCTTGCATCATTTA 1822 > Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1 Length=2097 Score = 1611 bits (872), Expect = 0.0 Identities = 1445/1721 (84%), Gaps = 42/1721 (2%) Strand=Plus/Plus Query 217 ttcgtcttct-ctttcgctcttatcttcggcttctctttcgctGG-TGATCCTTACGTCT 274 ||| || ||| |||| |||||| ||| |||| | |||||||| || || |||| ||||| Sbjct 145 TTCCTCCTCTGCTTT-GCTCTTCTCTCCGGCGTGTCTTTCGC-GGCGGACCCTTTCGTCT 202 Query 275 CTTACGATTTCACCCTCTCCTACATCACTGCTTCTCCTCTCGGTGTTCCTCAACAGGTTA 334 | ||||| |||| | || |||||||| ||||| || ||||| |||||||||||||||| Sbjct 203 CCTACGACTTCAGGGTTTCTTACATCACCGCTTCCCCCCTCGGCGTTCCTCAACAGGTTA 262 Query 335 TAGCAGTCAATGGGAAATTTCCAGGTCCTGTGATTAACGCTACGACAAACTACAATGTTC 394 |||| ||||||||| | |||||||| ||| || |||| || || || |||||||||||| Sbjct 263 TAGCTGTCAATGGGCAGTTTCCAGGACCTCTGCTTAATGCCACTACCAACTACAATGTTG 322 Query 395 ATGTTAACGTACTCAATCATTTGGATGAGCCTCTTTTACTT-ACTTGGCCTGGTGTTCAG 453 ||||||||| |||||||||||||||||||||| | ||| ||||||||||| | || Sbjct 323 TTGTTAACGTTTTCAATCATTTGGATGAGCCTCTCCT-CTTGACTTGGCCTGGCATCCAA 381 Query 454 ATGAGGCGTAACTCGTGGCAAGACGGTGTTCTTGGAACAAACTGTCCAATTCCACCGA-A 512 ||| ||||||||||||||||||||||||||||||| |||||||| || ||||| || | | Sbjct 382 ATGCGGCGTAACTCGTGGCAAGACGGTGTTCTTGGCACAAACTGCCCTATTCCTCCCAGA 441 Query 513 TTGGAACTTCACTTATGATTTTC-AGTTGAAAGATCAGATTGGAAG-TTATTTCTACTCT 570 |||||||| ||||| | |||| || |||| ||||| |||||||| || ||||||||| Sbjct 442 -TGGAACTTTACTTACCAATTTCAAG-TGAAGGATCAAATTGGAAGCTT-TTTCTACTCC 498 Query 571 CCTTCACTTAACTTTCAGAGAGCCTCTGGTGGTTTTGGTGCAC-TCATAATCAATAACAG 629 |||||||| |||||||||||||| ||||| ||||||||| | | || | || |||||| | Sbjct 499 CCTTCACTCAACTTTCAGAGAGCATCTGGGGGTTTTGGT-CCCATCGTGATTAATAACCG 557 Query 630 AGACCTTGTTCCTATTCCGTTCACTGAGCCTGATGGTGAAATCATCTTTATTATTGGTGA 689 ||| || ||||||| || ||| | ||||||| || ||| ||||||| ||||||||||| Sbjct 558 TGACATTATTCCTATCCCTTTCCCACAGCCTGACGGCGAACTCATCTTCATTATTGGTGA 617 Query 690 TTGGTATACTCAGAACCATACAGCTTTAAGGAGGATACTTGACTCTGGTAAAGAACTTGG 749 |||||| |||||| |||||| ||| |||||||| ||||| |||||||| ||||||||||| Sbjct 618 TTGGTACACTCAGGACCATAAAGCATTAAGGAGAATACTCGACTCTGGGAAAGAACTTGG 677 Query 750 GATGCCCGATGGAGTACTCATCAATGGGAAAGGTCCTTTCAAGTACAATAGCAGTGTACC 809 |||||| |||||||| |||||||||||||| ||||||| ||||||||| || |||||||| Sbjct 678 GATGCCAGATGGAGTCCTCATCAATGGGAAGGGTCCTTACAAGTACAACAGTAGTGTACC 737 Query 810 TGATGGAATTGA--ACATGAAACCGTTAATGTTGATCCAGGGAAAACATACAGGATCCGT 867 |||||||||||| || | |||| || ||||||| ||||||||||||||||| |||||| Sbjct 738 TGATGGAATTGATTAC-T-TAACCTTTCATGTTGAGCCAGGGAAAACATACAGAATCCGT 795 Query 868 GTTCACAATGTTGGTATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAAATTGCTC 927 |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 796 GTTCACAATGTTGGGATCTCGACAAGCTTGAACTTCAGGATTCAGAACCACAATTTGCTT 855 Query 928 TTGATTGAGACTGAGGGTCGCTACACCTCCCAAATGAACTTCACCGATTTTGATGTTCAT 987 ||| | || || ||||||| ||| ||||| || |||||| || ||||||||||||||| Sbjct 856 TTGGTAGAAACCGAGGGTCACTATACCTCACAGGCGAACTTTACTGATTTTGATGTTCAT 915 Query 988 GTGGGACAGTCTTATTCTTTCCTGGTAACCATGGACCAAAACGCCACAAGTGACTACTAC 1047 || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 916 GTAGGACAGTCTTATTCTTTCTTGGTAACCATGGACCAAAACGCCACAAGTGACTACTAC 975 Query 1048 ATTGTGGCGAGTGCTAGATTTGTTAATGAAACAGTGTGGCAAAGAGTCACAGGTGTTGGC 1107 ||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||| | Sbjct 976 ATTGTTGCCAGTGCTAGATTTGTGAATGAAACAGTGTGGCAAAGAGTCACTGGTGTTGCC 1035 Query 1108 ATTCTCCATTATTCCAATTCCAAAGGACCTGCTTCTGGTCCTTTGCCAGTTTCAGCAACT 1167 |||||||||||||| |||||||||||||||| |||||||||| | |||||| || ||| Sbjct 1036 ATTCTCCATTATTCTAATTCCAAAGGACCTGTTTCTGGTCCTCTACCAGTTCCAAAAACC 1095 Query 1168 GATGTTAATCA-CCCTTGGTCTGCAATGAACCAACCGAGAG-CCATAAAGCAAAACACAT 1225 |||||| | | ||| ||||| ||||||||||| |||| || |||| | ||||||||||| Sbjct 1096 GATGTTTCT-AGCCCATGGTCAGCAATGAACCAGCCGA-AGGCCATCAGGCAAAACACAT 1153 Query 1226 CTGCAAGTGGAGCTCGTCCAAATCCGCAGGGATCATTTCACTACGGACAGATCAACATTA 1285 |||| |||||||||||||||||||||||||||||||||||||| || || || ||||| | Sbjct 1154 CTGCTAGTGGAGCTCGTCCAAATCCGCAGGGATCATTTCACTATGGTCAAATAAACATCA 1213 Query 1286 C-AAGAACATACATCTTGAGGAGTTTGCCTCCAACAAAAATCAATGGGAAACTTCGTGCT 1344 | || | ||||||| ||||| |||||||||||||||| ||| || ||| ||| |||||| Sbjct 1214 CTAACA-CATACATTTTGAGAAGTTTGCCTCCAACAACAATTAACGGGGCACTACGTGCT 1272 Query 1345 ACACTTAATGGAATTTCATTTGTCAATCCAAGCACCCCCA-TGAGGCTTGCGGAT-GACC 1402 ||||||||||| ||||||||||| ||||||||||| || | |||||||||||||| | | Sbjct 1273 ACACTTAATGGGATTTCATTTGTGAATCCAAGCACTCC-AGTGAGGCTTGCGGATCG-CA 1330 Query 1403 ATAAAGTGAAAGGAGATTATATGTTAGATTTTCCAGACAGACCACTTGATGAAAAACTTC 1462 ||||||||||||||| ||||| | | || || || || ||||| || | | | | || | Sbjct 1331 ATAAAGTGAAAGGAGCTTATAAGCTGGACTTCCCTGATAGACCTTTT-A-GTAGACCT-C 1387 Query 1463 CACGTTTGTCCAGCTCTATCATCAACGCAACATACAAGGGCTTTATACAAGTTATCTTCC 1522 | |||||| ||| ||||| ||||||||||||||||||||||||||||||||| | |||| Sbjct 1388 CTCGTTTGGACAGATCTATGATCAACGCAACATACAAGGGCTTTATACAAGTTGTTTTCC 1447 Query 1523 AGAACAATGACACCAAAATCCAGAGCTTCCATATTGATGGATATGCATTTTACGTGGTTG 1582 ||||||| |||||||| ||||||||||||||| ||||||||||| |||||| || |||| Sbjct 1448 AGAACAACGACACCAAGATCCAGAGCTTCCATGTTGATGGATATTCATTTTTTGTTGTTG 1507 Query 1583 CGATGGACTTTGGTATATGGTCAGAAGACAGAAACAGTTCTTATAACAACTGGGATGC-A 1641 ||||||||||||||| ||||||||||||| ||| |||| |||||||||| ||||| | Sbjct 1508 GGATGGACTTTGGTATCTGGTCAGAAGACAAAAAGGGTTCATATAACAACTATGATGCCA 1567 Query 1642 GTAGCACGAAGCACGGTGGAGGTCTATCCAGGAGCATGGACTGCTGTACTTATTTCTCTC 1701 | || ||||||| | |||| || || || | |||||| |||||||||||||| || Sbjct 1568 -TCTCAAGAAGCACAATCAAGGTATACCCTGGGGGATGGACGGCTGTACTTATTTCCCTT 1626 Query 1702 GATAATGTTGGAGTTTGGAATATCCGGGTTGAGAATCTTGACAGATGGTATCTTGGCCAA 1761 ||||| |||||||||||||| || || || |||||||||||||||||||||||||| || Sbjct 1627 GATAACGTTGGAGTTTGGAACATTCGAGTAGAGAATCTTGACAGATGGTATCTTGGTGAA 1686 Query 1762 GAAACATACATGCGAATTATAAACCCTGAGGAAAACGGAA-GTACGGAAATGGATCCGCC 1820 ||||| || ||||| || | |||||| || || | |||| | || || |||||||| || Sbjct 1687 GAAACTTATATGCGGATCACAAACCCCGAAGAGGATGGAAAG-ACAGAGATGGATCCTCC 1745 Query 1821 TGAAAATGTTATGTATTGTGGTGCTCTTCAGGCCATGCAAAAGGAACAACATCACAGCTC 1880 ||| ||||| | || |||||||| ||| || | |||| ||||||||||| | || ||| Sbjct 1746 TGACAATGTCCTTTACTGTGGTGCCCTTAAGAACTTGCAGAAGGAACAACA-C-CA-CTC 1802 Query 1881 GGCCACAAAATCAATGAC-AAATGGACAGTTGATA-CTAAT 1919 || ||| ||| || || ||||||||| |||| | ||||| Sbjct 1803 AGCTGCAACATCTAT-ACTAAATGGACACTTGA-AGCTAAT 1841 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85322148800 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5