BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51490.1
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357390 jgi|Araly1|357390|fgenesh1_pg.C_scaffold_8001177 2362 0.0
Ahg949697 jgi|Araly1|949697|scaffold_801584.1 756 0.0
Ahg952370 jgi|Araly1|952370|scaffold_6400004.1 472 5e-132
> Ahg357390 jgi|Araly1|357390|fgenesh1_pg.C_scaffold_8001177
Length=1620
Score = 2362 bits (1279), Expect = 0.0
Identities = 1513/1625 (93%), Gaps = 19/1625 (1%)
Strand=Plus/Plus
Query 1 ATGAATATGATGATGCAAAAACTCTCTATTCTATTTCTACATTTAATATTACTAGTACTA 60
||||||||||||||||||||| ||||| |||||| |||||||||| |||||||| || ||
Sbjct 1 ATGAATATGATGATGCAAAAAATCTCTTTTCTATCTCTACATTTACTATTACTACTAGTA 60
Query 61 CTCTGCGTCCATCCTCTCACCACCGTAGCCGACCGCAATTCCACCG--A-T------TGG 111
||||||||||||||||||||||||||||||||| |||||||||||| | | |||
Sbjct 61 CTCTGCGTCCATCCTCTCACCACCGTAGCCGACGGCAATTCCACCGACATTGACCGATGG 120
Query 112 TGCGACAAAACTCCATACCCTGATCCATGCAAATGCTACTTCAAGAACCACAACGGATTT 171
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGCGACAAAACTCCATATCCTGATCCATGCAAATGCTACTTCAAGAACCACAACGGATTT 180
Query 172 CAACAGCCGACACAATTATCCGAGTTCCGAGTAATGCTGGTGGAAGCAGCCATGGATCGG 231
| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CGACAGCCGACACAAATATCCGAATTCCGAGTAATGCTGGTGGAAGCAGCCATGGATCGA 240
Query 232 GCCATATCCGCCCGTGCCGAGTTGACTAATTCCGGCAAGAACTGCACGGATAGCAAGAAA 291
|| ||||||||||| ||||||||||||||||||||| ||||| ||| |||| |||||||
Sbjct 241 GCTATATCCGCCCGGGCCGAGTTGACTAATTCCGGCCGGAACTACACAGATATCAAGAAA 300
Query 292 CAAGCAGTTTTGGCGGATTGCATTGACCTCTATGGAGACACGATCATGCAGTTAAACCGG 351
||||| |||||| | |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 301 CAAGCCGTTTTGACAGATTGCATTGACCTTTACAGAGACACGATCATGCAGTTAAACCGG 360
Query 352 ACATTGCATGGCGTGTCTCCTAAAGCCGGTGCCGCGAAAA-GTTGCACTGACTTCGACGC 410
|| |||| ||||||||||| ||||| ||||| || |||| |||||||||||||||||||
Sbjct 361 ACGCTGCAGGGCGTGTCTCCAAAAGCAGGTGCTGC-AAAACGTTGCACTGACTTCGACGC 419
Query 411 TCAAACGTGGCTGAGCACCGCGCTTACAAACACCGAGACCTGCCGACGTGGCTCATCCGA 470
|| ||||||||||| || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 GCAGACGTGGCTGAGTACAGCGCTTACAAACACCGAGACCTGCCGACTTGGCTCATCCGA 479
Query 471 TTTAAACGTCACAGACTTCATCACACCCATCGTTTCAAACACCAAAATCTCCCACCTCAT 530
||| |||||| |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 TTTCAACGTCTCAGATTTCATCACACCCATCGTTTCAAACACCAAAATCTCCCATCTCAT 539
Query 531 TAGCAACTGCTTAGCCGTCAACGGA-GCCCTCTTGACCGCTGGAAACAAAGGCAACACCA 589
|||||||||||||| |||||| || |||||||||||||| |||||||| ||||||||||
Sbjct 540 CAGCAACTGCTTAGCTGTCAAC-GAGGCCCTCTTGACCGCCGGAAACAACGGCAACACCA 598
Query 590 CTGCTAATCAAAAGGGCTTTCCGACGTGGCTTTCCCG-TAAAGATAAG-AGACTCCTGCG 647
|||||||||| ||||| |||||||||||| ||| | | |||||| || ||||| |||||
Sbjct 599 CTGCTAATCAGAAGGGTTTTCCGACGTGGGTTT-CTGACAAAGAT-AGAAGACTTCTGCG 656
Query 648 TGCCGTTCGAGCCAACCTCGTGGTGGCCAAGGACGGATCAGGACATTTCAACACGGTACA 707
|| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TGTGGTCCGAGCCAACCTTGTGGTGGCCAAGGACGGATCAGGACATTTCAACACGGTACA 716
Query 708 AGCGGCTATTGACGTGGCGGGACGGAGAAAGGTGACGTCAGGGAGGTTCGTTATATACGT 767
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 717 AGCGGCTATTGACGTAGCTGGACGTAGAAAGGTGACGTCAGGGAGGTTCGTTATATACGT 776
Query 768 AAAAAGAGGTATATATCAAGAAAACATTAACGTACGTCTAAATAATGATGACATAATGTT 827
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 GAAAAGAGGGATATATCAAGAAAACATAAACGTACGTCTAAATAATGATGACATAATGTT 836
Query 828 GGTCGGAGATGGAATGAGATCCACCATTATCACCGGCGGTCGAAGTGTCCAAGGAGGTTA 887
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 837 GGTCGGAGATGGAATGAGATCCACCATTATCACCGGCGGTCGAAGTGTCAAAGGAGGTTA 896
Query 888 CACCACGTACAATTCCGCTACTGCCGGTATCGAGGGACTTCACTTCATTGCCAAAGGCAT 947
|||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 897 CACCACTTACAATTCCGCTACTGCCGGTATTGAGGGACTTCACTTCATAGCCAAAGGCAT 956
Query 948 AACGTTTAGGAACACAGCTGGTCCAGCCAAGGGCCAGGCCGTGGCACTTCGTTCATCGTC 1007
||||||| |||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 957 AACGTTTCGGAACACAGCGGGTCCGGCCAAGGGCCAGGCCGTGGCACTTCGGTCATCGTC 1016
Query 1008 TGACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGATACACTGATGGTCCA 1067
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1017 TGACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGACACACTTATGGTCCA 1076
Query 1068 TTCTCAACGCCAGTTTTACCGTGAGTGTTACATCTATGGAACCGTCGATTTCATATTCGG 1127
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1077 TTCTCAACGCCAGTTTTACCGCGAGTGTTACATCTATGGAACCGTCGATTTCATATTTGG 1136
Query 1128 TAACGCGGCTGCTGTTTTCCAAAACTGTCTCATCCTCCCTCGCCGGCCACTCAAAGGTCA 1187
||| ||||| || || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1137 TAATGCGGCCGCCGTATTCCAAAACTGTATCATCCTCCCTCGCCGGCCACTCAAAGGTCA 1196
Query 1188 AGCCAATGTAATTACCGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCTCTAT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGCCAATGTAATTACCGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCTCTAT 1256
Query 1248 CCATAACTCAAGAATCCTACCGGCTCCTGATCTAAAACCAGTGGTCGGTACCGTTAAGAC 1307
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1257 CCATAACTCAAGAATTCTACCGGCTCCTGATCTAAAACCAGTGGTAAGTACCGTTAAGAC 1316
Query 1308 GTACATGGGCCGGCCTTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTATTTGGA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 GTACATGGGCCGGCCTTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTATTTGGA 1376
Query 1368 TAATGTTGTGAGTCCAGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGGTCTGGA 1427
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 TAATGTTGTGAGTCCGGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGGTCTGGA 1436
Query 1428 CACTCTCTTCTATGCAGAATATAAGAATACTGGACCAGCTTCATCCACGAGGTGGCGTGT 1487
|||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1437 CACTCTGTTCTATGCAGAATATAAGAATACCGGACCAGCTTCATCCACGAGGCAGCGTGT 1496
Query 1488 C-AGTTGGAAAGGGTTTCATGTGTTGGGTAGAGCTTCCGATGCATCTGCTTTCACTGTTG 1546
| | ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1497 CCA-TTGGAAAGGGTATCATGTGTTGGGTAGAGCTTCAGATGCATCTGCTTTCACTGTTG 1555
Query 1547 GAAAGTTTATCGCTGGTACAGCATGGCTCCCACGCACCGGCATACCCTTCACTTCTGGAC 1606
|||| |||||||| ||||| |||||||||||| ||||||||||||| |||||||| ||||
Sbjct 1556 GAAAATTTATCGCCGGTACCGCATGGCTCCCAAGCACCGGCATACCTTTCACTTCCGGAC 1615
Query 1607 TCTAA 1611
|||||
Sbjct 1616 TCTAA 1620
> Ahg949697 jgi|Araly1|949697|scaffold_801584.1
Length=714
Score = 756 bits (409), Expect = 0.0
Identities = 584/670 (87%), Gaps = 6/670 (1%)
Strand=Plus/Plus
Query 964 GCTGGTCCAGCCAAGGGCCAGGCCGTGGCACTTCGTTCATCGTCTGACCTCTCAATCTTC 1023
|||||||| |||||||| || ||||||||||| || ||||| || |||||||||||||||
Sbjct 46 GCTGGTCCGGCCAAGGGACATGCCGTGGCACTACGGTCATCCTCGGACCTCTCAATCTTC 105
Query 1024 TACAAATGCTCAATCGAAGGATACCAAGATACACTGATGGTCCATTCTCAACGCCAGTTT 1083
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 106 TACAAATGCTCAATCGAAGGATACCAAGACACACTGATGGTCCATTCGCAACGCCAGTTT 165
Query 1084 TACCGTGAGTGTTACATCTATGGAACCGTCGATTTCATATTCGGTAACGCGGCTG-CTGT 1142
|||||||| || ||||| || |||| |||||||| || ||||| ||||| || | | ||
Sbjct 166 TACCGTGAATGCTACATTTACGGAAGTGTCGATTTTATCTTCGGAAACGCAGCCGTC-GT 224
Query 1143 TTTCCAAAACTGTCTCATCCTCCCTCGCCGGCCACTCAAAGGTCAAGCCAATGTAATTAC 1202
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |
Sbjct 225 TTTCCAAAACTGTCTTATCCTCCCTCGTCGGCCACTCAAAGGTCAAGCCAATGTGATAAT 284
Query 1203 CGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCTCTATCCATAACTCAAGAAT 1262
||||||||||||| |||||| |||| |||| ||||||||||||||||||||||| |||
Sbjct 285 CGCACAAGGTCGTACTGATCTAATTCAAAACAAAGGGATCTCTATCCATAACTCAATAAT 344
Query 1263 CCTACCGGCTCCTGATCTAAAACCAGTGGTCGGTACCGTTAAGACGTACATGGGCCGGCC 1322
| |||||||||||||||||||||| |||||| ||| |||||| ||||| |||||||| ||
Sbjct 345 CATACCGGCTCCTGATCTAAAACCGGTGGTCCGTAGCGTTAAAACGTATATGGGCCGACC 404
Query 1323 TTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTATTTGGATAATGTTGTGAGTCC 1382
||||||||||| ||| || || ||||||||| |||||||| | |||| |||||||||| |
Sbjct 405 TTGGATGAAGTACTCGCGCACTGTGGTTCTTAAGACGTATATAGATAGTGTTGTGAGTGC 464
Query 1383 AGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGGTCTGGACACTCTCTTCTATGC 1442
|||||||||||| |||||| | |||||||| | |||||| |||| || ||||||||
Sbjct 465 GGTCGGGTGGTCTTCGTGGACTAAAGGTTCGACATATGGTCTCAACACGCTGTTCTATGC 524
Query 1443 AGAATATAAGAATA-CTGGACCAGCTTCATCCACGAGGTGGCGTGTCAGTTGGAAAGGGT 1501
| |||||||||||| | ||||| |||||||||||||||||||| ||| ||||||||||||
Sbjct 525 AAAATATAAGAATATC-GGACCGGCTTCATCCACGAGGTGGCGAGTCCGTTGGAAAGGGT 583
Query 1502 TTCATGTGTTGGGTAGAGCTTCCGATGCATCTGCTTTCACTGTTGGAAAGTTTATCGCTG 1561
||||||| ||| ||| ||| || |||| ||||||||||||||||||||| || || ||||
Sbjct 584 TTCATGTCTTGAGTAAAGCCTCTGATGTATCTGCTTTCACTGTTGGAAAATTCATAGCTG 643
Query 1562 GTACAGCATGGCTCCCACGCACCGGCATACCCTTCACTTCTGGA-CTCTAAAGACCGTCT 1620
|||| || ||||||||| |||| |||||||||||||||| | || ||||| || ||||||
Sbjct 644 GTACTGCGTGGCTCCCAAGCACTGGCATACCCTTCACTT-TAGAACTCTAGAGGCCGTCT 702
Query 1621 TTGGTTTTTC 1630
||||||||||
Sbjct 703 TTGGTTTTTC 712
> Ahg952370 jgi|Araly1|952370|scaffold_6400004.1
Length=666
Score = 472 bits (255), Expect = 5e-132
Identities = 385/449 (86%), Gaps = 4/449 (1%)
Strand=Plus/Plus
Query 1184 GTCAAGCCAATGTAATTACCGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCT 1243
||||||||||||| || ||||||||||||||| |||||| |||| |||||||||||||
Sbjct 218 GTCAAGCCAATGTGATAACCGCACAAGGTCGTACTGATCTAATTCAAAACACAGGGATCT 277
Query 1244 CTATCCATAACTCAAGAATCCTACCGGCTCCTGATCTAAAACCAGTGGTCGGTACCGTTA 1303
||||||||||||||| |||| ||||||||| ||||||||||| |||||| ||| |||||
Sbjct 278 CTATCCATAACTCAATAATCATACCGGCTCATGATCTAAAACTGGTGGTCCGTAGCGTTA 337
Query 1304 AGACGTACATGGGCCGGCCTTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTATT 1363
| || || |||||||| ||||||||||||| ||| || || ||||||||| ||||||||
Sbjct 338 AAACCTATATGGGCCGACCTTGGATGAAGTACTCGCGCACTGTGGTTCTTAAGACGTATA 397
Query 1364 TGGATAATGTTGTGAGTCCAGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGGTC 1423
| |||| |||||||| | | ||||||||||| ||||||| | |||||||| | |||||
Sbjct 398 TAGATAGTGTTGTGAATGCGGTCGGGTGGTCACCGTGGACTAAAGGTTCGACATATGGTC 457
Query 1424 TGGACACTCTCTTCTATGCAGAATATAAGAATA-CTGGACCAGCTTCATCCACGAGGTGG 1482
| |||| || ||||||||| |||||||||||| | ||||| ||||||||||||||||||
Sbjct 458 TCAACACGCTGTTCTATGCAAAATATAAGAATATC-GGACCGGCTTCATCCACGAGGTGG 516
Query 1483 CGTGTCAGTTGGAAAGGGTTTCATGTGTTGGGTAGAGCTTCCGATGCATCTGCTTTCACT 1542
|| ||| ||||||||||||||||||| ||| ||| ||| || |||| |||||||||||||
Sbjct 517 CGAGTCCGTTGGAAAGGGTTTCATGTCTTGAGTAAAGCCTCTGATGTATCTGCTTTCACT 576
Query 1543 GTTGGAAAGTTTATCGCTGGTACAGCATGGCTCCCACGCACCGGCATACCCTTCACTTCT 1602
|||||||| || || |||||||| || ||||||||| |||| |||||||||||||||| |
Sbjct 577 GTTGGAAAATTCATAGCTGGTACTGCGTGGCTCCCAAGCACTGGCATACCCTTCACTT-T 635
Query 1603 GGA-CTCTAAAGACCGTCTTTGGTTTTTC 1630
|| ||||| || ||||||||||||||||
Sbjct 636 AGAACTCTAGAGGCCGTCTTTGGTTTTTC 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65210499440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5