BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51500.1
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357390 jgi|Araly1|357390|fgenesh1_pg.C_scaffold_8001177 1718 0.0
Ahg949697 jgi|Araly1|949697|scaffold_801584.1 865 0.0
Ahg952370 jgi|Araly1|952370|scaffold_6400004.1 584 6e-166
> Ahg357390 jgi|Araly1|357390|fgenesh1_pg.C_scaffold_8001177
Length=1620
Score = 1718 bits (930), Expect = 0.0
Identities = 1402/1630 (86%), Gaps = 32/1630 (2%)
Strand=Plus/Plus
Query 10 ATGATGGTGCAAAATATCTCTTTTCTATCTCTACATTTACTATTAATATTACTACTCTGC 69
|||||| ||||||| |||||||||||||||||||||||||||||| || || ||||||||
Sbjct 7 ATGATGATGCAAAAAATCTCTTTTCTATCTCTACATTTACTATTACTACTAGTACTCTGC 66
Query 70 CTCCGTCCTCTTACCACCGTAGCCGACGGCAATTCTACCAACATTGACGGGTGGTGCGAC 129
||| |||||| ||||||||||||||||||||||| ||| |||||||| | |||||||||
Sbjct 67 GTCCATCCTCTCACCACCGTAGCCGACGGCAATTCCACCGACATTGACCGATGGTGCGAC 126
Query 130 AAAACTCCATACCCAT-ATCCATGCAAACGCTACTTCATA-AAACACAGCGGTTTTCGAC 187
||||||||||| || | ||||||||||| ||||||||| | || |||| ||| |||||||
Sbjct 127 AAAACTCCATATCC-TGATCCATGCAAATGCTACTTCA-AGAACCACAACGGATTTCGAC 184
Query 188 TGCCAACACAAATATCCGAGTTCCGAGTACTTCTCGTGGAAGCAGCCATGGATCGGGCCG 247
||| |||||||||||||| ||||||||| | || |||||||||||||||||||| ||
Sbjct 185 AGCCGACACAAATATCCGAATTCCGAGTAATGCTGGTGGAAGCAGCCATGGATCGAGCTA 244
Query 248 TATCCGCTTGGGACAAATTGACCAATTCAAGCAAGAACTGCACAGATTTCAAGAAACAAG 307
||||||| ||| | | ||||| ||||| || ||||| ||||||| ||||||||||||
Sbjct 245 TATCCGCCCGGGCCGAGTTGACTAATTCCGGCCGGAACTACACAGATATCAAGAAACAAG 304
Query 308 CAGTTTTGGCGGATTGCATTAACCTCTATGGAGACACTG-TCATGCAGCTAAACAGAACG 366
| |||||| | ||||||||| |||| || ||||||| | |||||||| ||||| | |||
Sbjct 305 CCGTTTTGACAGATTGCATTGACCTTTACAGAGACAC-GATCATGCAGTTAAACCGGACG 363
Query 367 CTGCAGGGCGTGTCTTCAAAAAC-CG-G--G-AGAA-GGTGTACTGACTTCGACGCTCAA 420
||||||||||||||| ||||| | | | | | || | || |||||||||||||| ||
Sbjct 364 CTGCAGGGCGTGTCTCCAAAAGCAGGTGCTGCAAAACGTTGCACTGACTTCGACGCGCAG 423
Query 421 ACGTGGCTAAGCACCGCGCTTACAAACACTGAGACTTGCCGACGCGGCTCCTCCGATCTC 480
|||||||| || || |||||||||||||| ||||| ||||||| ||||| |||||| ||
Sbjct 424 ACGTGGCTGAGTACAGCGCTTACAAACACCGAGACCTGCCGACTTGGCTCATCCGATTTC 483
Query 481 AACGTCTCAGATTTCACT-ACACCTATTGTTTCAAACACAAAAATCTCTCACCTCATCAG 539
|||||||||||||||| | ||||| || ||||||||||| |||||||| || ||||||||
Sbjct 484 AACGTCTCAGATTTCA-TCACACCCATCGTTTCAAACACCAAAATCTCCCATCTCATCAG 542
Query 540 CAACTGCTTAGCCGTCAACGGA-GCCCTTTTGACCGCCGGAAAAAATGACAGCACCACCG 598
|||||||||||| |||||| || ||||| |||||||||||||| || | || |||||| |
Sbjct 543 CAACTGCTTAGCTGTCAAC-GAGGCCCTCTTGACCGCCGGAAACAACGGCAACACCACTG 601
Query 599 GTGATTC-CAAGGGTTTTCCAACGTGGGTTTCCCG-TAAAGAGAGGAGACTTTTGCAATT 656
| | || ||||||||||| |||||||||| | | ||||| || |||||| ||| |
Sbjct 602 CT-AATCAGAAGGGTTTTCCGACGTGGGTTT-CTGACAAAGATAGAAGACTTCTGC--GT 657
Query 657 GCAATCAGTGCGTGCGAATCTTGTAGTGGCCAAAGACGGATCGGGACATTTCAAGACGGT 716
| | || || || || ||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 658 G---T-GGTCCGAGCCAACCTTGTGGTGGCCAAGGACGGATCAGGACATTTCAACACGGT 713
Query 717 GCAAGCGGCTATTGACGTGGCGGGACGGAGAAAGGTGACGTCAGGGAGGTTCGTTATATA 776
||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 714 ACAAGCGGCTATTGACGTAGCTGGACGTAGAAAGGTGACGTCAGGGAGGTTCGTTATATA 773
Query 777 CGTAAAAAGAGGGATATATCAAGAAAACCTTAACGTACGTCTAAATAATGATAACATAAT 836
||| |||||||||||||||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 774 CGTGAAAAGAGGGATATATCAAGAAAACATAAACGTACGTCTAAATAATGATGACATAAT 833
Query 837 GTTGGTCGGAGATGGAATGAGATATACCATTATCACCGGTGGTCGAAGTGTTAAAGGAGG 896
||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 834 GTTGGTCGGAGATGGAATGAGATCCACCATTATCACCGGCGGTCGAAGTGTCAAAGGAGG 893
Query 897 TTACACCACGTACAGTTCTGCCACTGCCGGTATAGAGGGACTTCACTTCATAGCAAAAGG 956
||||||||| |||| ||| || ||||||||||| |||||||||||||||||||| |||||
Sbjct 894 TTACACCACTTACAATTCCGCTACTGCCGGTATTGAGGGACTTCACTTCATAGCCAAAGG 953
Query 957 CATAGCGTTCCAGAACACGGCAGGTCCGGCAAAAGGCCAGGCAGTGGCACTACGGTCATC 1016
|||| |||| | |||||| || |||||||| || |||||||| |||||||| ||||||||
Sbjct 954 CATAACGTTTCGGAACACAGCGGGTCCGGCCAAGGGCCAGGCCGTGGCACTTCGGTCATC 1013
Query 1017 CTCGGACCTCTCAATCTTCTATAGATGCTCCATCGAAGGATACCAAGACACA-TTGATGG 1075
|| ||||||||||||||||| | |||||| ||||||||||||||||||||| || ||||
Sbjct 1014 GTCTGACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGACACACTT-ATGG 1072
Query 1076 TCCATTCACAACGCCAGTTTTATCGCGAGTGCTACATCTATGGAACTGTCGATTTCATCT 1135
||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||| |
Sbjct 1073 TCCATTCTCAACGCCAGTTTTACCGCGAGTGTTACATCTATGGAACCGTCGATTTCATAT 1132
Query 1136 TCGGAAACGCGGCCGTTGTTTTCCAAAACTGTATCATCCTGCCTCGCCTGCCACTCAAAG 1195
| || || ||||||| || |||||||||||||||||||| ||||||| |||||||||||
Sbjct 1133 TTGGTAATGCGGCCGCCGTATTCCAAAACTGTATCATCCTCCCTCGCCGGCCACTCAAAG 1192
Query 1196 GTCAAGCCAATGTAATAACCGCACAAGGTCGTACTGATCTATTTCAGAACACAGGGATCT 1255
|||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1193 GTCAAGCCAATGTAATTACCGCACAAGGTCGTGCTGATCCGTTTCAGAACACAGGGATCT 1252
Query 1256 CTATTCATAACTCAATAAT-CATACCCGCTCCTGA-CTTAAAACCGGTGGTCCGTAGTGT 1313
|||| |||||||||| ||| | |||| |||||||| || |||||| ||||| ||| ||
Sbjct 1253 CTATCCATAACTCAAGAATTC-TACCGGCTCCTGATCT-AAAACCAGTGGTAAGTACCGT 1310
Query 1314 TAAGACATATATGGGTCGACCCTGGATGATGTACTCCCGCACCGTGGTTCTTAAGACGTA 1373
|||||| || ||||| || || ||||||| || ||| || |||||||||||| |||||||
Sbjct 1311 TAAGACGTACATGGGCCGGCCTTGGATGAAGTTCTCACGAACCGTGGTTCTTCAGACGTA 1370
Query 1374 CATCGATAGTGTTGTGAGTCCTGTCGGGTGGTCTCCGTGGACTAAAGGTTCGACGTATGG 1433
| |||| |||||||||||| ||||||||||||||||||| | |||||||| || |||
Sbjct 1371 TTTGGATAATGTTGTGAGTCCGGTCGGGTGGTCTCCGTGGATTGAAGGTTCGGTGTTTGG 1430
Query 1434 TCTCGACACGCTGTTCTATGCGGAATATAAGAATATCGGACCGGCTTCATCCACGAGGTG 1493
||| ||||| ||||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 1431 TCTGGACACTCTGTTCTATGCAGAATATAAGAATACCGGACCAGCTTCATCCACGAGGCA 1490
Query 1494 GCGTGTCCGTTGGAAAGGGTTTCATGTGTTGAGTAAAGCTTCCGATGCATCTGCTTTCTC 1553
|||||||| ||||||||||| |||||||||| ||| |||||| ||||||||||||||| |
Sbjct 1491 GCGTGTCCATTGGAAAGGGTATCATGTGTTGGGTAGAGCTTCAGATGCATCTGCTTTCAC 1550
Query 1554 TGTTGGAAAATTCATCGCTGGTACTGCGTGGCTCCCAGGCTCTGGCATACCCTTCACTTC 1613
|||||||||||| ||||| ||||| || ||||||||| || | |||||||| ||||||||
Sbjct 1551 TGTTGGAAAATTTATCGCCGGTACCGCATGGCTCCCAAGCACCGGCATACCTTTCACTTC 1610
Query 1614 AGAACTCTAA 1623
| |||||||
Sbjct 1611 CGGACTCTAA 1620
> Ahg949697 jgi|Araly1|949697|scaffold_801584.1
Length=714
Score = 865 bits (468), Expect = 0.0
Identities = 598/662 (90%), Gaps = 4/662 (1%)
Strand=Plus/Plus
Query 962 CGTTCCAGAACACGGCAGGTCCGGCAAAAGGCCAGGCAGTGGCACTACGGTCATCCTCGG 1021
|||||| | | ||||| |||||||| || || || || ||||||||||||||||||||||
Sbjct 34 CGTTCC-GGA-ACGGCTGGTCCGGCCAAGGGACATGCCGTGGCACTACGGTCATCCTCGG 91
Query 1022 ACCTCTCAATCTTCTATAGATGCTCCATCGAAGGATACCAAGACACATTGATGGTCCATT 1081
|||||||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 92 ACCTCTCAATCTTCTACAAATGCTCAATCGAAGGATACCAAGACACACTGATGGTCCATT 151
Query 1082 CACAACGCCAGTTTTATCGCGAGTGCTACATCTATGGAACTGTCGATTTCATCTTCGGAA 1141
| |||||||||||||| || || |||||||| || |||| ||||||||| ||||||||||
Sbjct 152 CGCAACGCCAGTTTTACCGTGAATGCTACATTTACGGAAGTGTCGATTTTATCTTCGGAA 211
Query 1142 ACGCGGCCGTTGTTTTCCAAAACTGTATCATCCTGCCTCGCCTGCCACTCAAAGGTCAAG 1201
|||| ||||| ||||||||||||||| | ||||| ||||| | |||||||||||||||||
Sbjct 212 ACGCAGCCGTCGTTTTCCAAAACTGTCTTATCCTCCCTCGTCGGCCACTCAAAGGTCAAG 271
Query 1202 CCAATGTAATAACCGCACAAGGTCGTACTGATCTATTTCAGAACACAGGGATCTCTATTC 1261
||||||| |||| |||||||||||||||||||||| |||| |||| |||||||||||| |
Sbjct 272 CCAATGTGATAATCGCACAAGGTCGTACTGATCTAATTCAAAACAAAGGGATCTCTATCC 331
Query 1262 ATAACTCAATAATCATACCCGCTCCTGACT-TAAAACCGGTGGTCCGTAGTGTTAAGACA 1320
||||||||||||||||||| |||||||| | ||||||||||||||||||| ||||| ||
Sbjct 332 ATAACTCAATAATCATACCGGCTCCTGA-TCTAAAACCGGTGGTCCGTAGCGTTAAAACG 390
Query 1321 TATATGGGTCGACCCTGGATGATGTACTCCCGCACCGTGGTTCTTAAGACGTACATCGAT 1380
|||||||| ||||| ||||||| |||||| ||||| ||||||||||||||||| || |||
Sbjct 391 TATATGGGCCGACCTTGGATGAAGTACTCGCGCACTGTGGTTCTTAAGACGTATATAGAT 450
Query 1381 AGTGTTGTGAGTCCTGTCGGGTGGTCTCCGTGGACTAAAGGTTCGACGTATGGTCTCGAC 1440
|||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||| ||
Sbjct 451 AGTGTTGTGAGTGCGGTCGGGTGGTCTTCGTGGACTAAAGGTTCGACATATGGTCTCAAC 510
Query 1441 ACGCTGTTCTATGCGGAATATAAGAATATCGGACCGGCTTCATCCACGAGGTGGCGTGTC 1500
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 511 ACGCTGTTCTATGCAAAATATAAGAATATCGGACCGGCTTCATCCACGAGGTGGCGAGTC 570
Query 1501 CGTTGGAAAGGGTTTCATGTGTTGAGTAAAGCTTCCGATGCATCTGCTTTCTCTGTTGGA 1560
|||||||||||||||||||| ||||||||||| || |||| |||||||||| ||||||||
Sbjct 571 CGTTGGAAAGGGTTTCATGTCTTGAGTAAAGCCTCTGATGTATCTGCTTTCACTGTTGGA 630
Query 1561 AAATTCATCGCTGGTACTGCGTGGCTCCCAGGCTCTGGCATACCCTTCACTTCAGAACTC 1620
|||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||
Sbjct 631 AAATTCATAGCTGGTACTGCGTGGCTCCCAAGCACTGGCATACCCTTCACTTTAGAACTC 690
Query 1621 TA 1622
||
Sbjct 691 TA 692
> Ahg952370 jgi|Araly1|952370|scaffold_6400004.1
Length=666
Score = 584 bits (316), Expect = 6e-166
Identities = 391/428 (91%), Gaps = 2/428 (0%)
Strand=Plus/Plus
Query 1196 GTCAAGCCAATGTAATAACCGCACAAGGTCGTACTGATCTATTTCAGAACACAGGGATCT 1255
||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 218 GTCAAGCCAATGTGATAACCGCACAAGGTCGTACTGATCTAATTCAAAACACAGGGATCT 277
Query 1256 CTATTCATAACTCAATAATCATACCCGCTCCTGACT-TAAAACCGGTGGTCCGTAGTGTT 1314
|||| |||||||||||||||||||| |||| ||| | |||||| |||||||||||| |||
Sbjct 278 CTATCCATAACTCAATAATCATACCGGCTCATGA-TCTAAAACTGGTGGTCCGTAGCGTT 336
Query 1315 AAGACATATATGGGTCGACCCTGGATGATGTACTCCCGCACCGTGGTTCTTAAGACGTAC 1374
|| || |||||||| ||||| ||||||| |||||| ||||| |||||||||||||||||
Sbjct 337 AAAACCTATATGGGCCGACCTTGGATGAAGTACTCGCGCACTGTGGTTCTTAAGACGTAT 396
Query 1375 ATCGATAGTGTTGTGAGTCCTGTCGGGTGGTCTCCGTGGACTAAAGGTTCGACGTATGGT 1434
|| ||||||||||||| | | ||||||||||| |||||||||||||||||||| ||||||
Sbjct 397 ATAGATAGTGTTGTGAATGCGGTCGGGTGGTCACCGTGGACTAAAGGTTCGACATATGGT 456
Query 1435 CTCGACACGCTGTTCTATGCGGAATATAAGAATATCGGACCGGCTTCATCCACGAGGTGG 1494
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 457 CTCAACACGCTGTTCTATGCAAAATATAAGAATATCGGACCGGCTTCATCCACGAGGTGG 516
Query 1495 CGTGTCCGTTGGAAAGGGTTTCATGTGTTGAGTAAAGCTTCCGATGCATCTGCTTTCTCT 1554
|| ||||||||||||||||||||||| ||||||||||| || |||| |||||||||| ||
Sbjct 517 CGAGTCCGTTGGAAAGGGTTTCATGTCTTGAGTAAAGCCTCTGATGTATCTGCTTTCACT 576
Query 1555 GTTGGAAAATTCATCGCTGGTACTGCGTGGCTCCCAGGCTCTGGCATACCCTTCACTTCA 1614
|||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |
Sbjct 577 GTTGGAAAATTCATAGCTGGTACTGCGTGGCTCCCAAGCACTGGCATACCCTTCACTTTA 636
Query 1615 GAACTCTA 1622
||||||||
Sbjct 637 GAACTCTA 644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60830121265
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5