BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51510.1
Length=752
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497223 jgi|Araly1|497223|fgenesh2_kg.64__3__AT5G51510.1 1007 0.0
Ahg495223 jgi|Araly1|495223|fgenesh2_kg.8__1039__AT5G51510.1 1002 0.0
Ahg905975 jgi|Araly1|905975|Al_scaffold_0003_3103 78.7 6e-14
> Ahg497223 jgi|Araly1|497223|fgenesh2_kg.64__3__AT5G51510.1
Length=675
Score = 1007 bits (545), Expect = 0.0
Identities = 636/679 (94%), Gaps = 9/679 (1%)
Strand=Plus/Plus
Query 26 CTCTTTCAATCTCCGATCAAATACAAACGCATACTTCCAATTTCGCCGGCGAAGATGCAG 85
|||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||
Sbjct 1 CTCTTTCAATCTCCGATCAAATCCAAACGCATTCTTCCGATTTCGCCGGAGAAGATGCAG 60
Query 86 CAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCATACCGC 145
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGAGAAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCATACCGC 120
Query 146 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 180
Query 206 ATCTTTGTTCAGGCTGCGATTTATGTAATCGGATTATCGTGTGCGTTTCTAACAACAACT 265
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||
Sbjct 181 ATCTTTGTTCAGGCTGCGATTTATTTAGTCGGATTATCGTGTGCGTTTCTGACAACGACT 240
Query 266 AAAAAGGATGAGAAGAACACCCTTGCTATTGCAGCTGCTGTTGCTGGCTTAGTGTGTTCA 325
||||||||||||| |||||||||||| |||||||| |||| |||||||||||||| ||||
Sbjct 241 AAAAAGGATGAGAGGAACACCCTTGCAATTGCAGCAGCTGCTGCTGGCTTAGTGTCTTCA 300
Query 326 TTGATAGGAGAATTAGGTTGCAGACGTAGCAGAGTAAACCTTTTGAGGCTCTACACGGCT 385
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 TTCATAGGAGAATTAGGTTGTAGACGCAGCAGAGTAAACCTTTTGAGGCTCTATACGGCT 360
Query 386 GCATCAACCATTGTTATGGTTCTTTCTGTGTTTTGTGCTGTTAGGAGCAGATTAACCATG 445
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 361 GCATCTACCATTGTTATGGTTCTTTCAGTGTTTTGTGCTGTTAGGAGCAGATTAACTATG 420
Query 446 GAGGAACGCAATAGCTCTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 505
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGGAACGGAATAGCACTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 480
Query 506 CAATTAGGAGCGGTGGTGCAGATATTAGCGATCATCGTTACAGGGTCCCTTGTCAATAAT 565
||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 481 CAATTTGGAGCGGTGGTGCAGATATTAGTGATCATCGTTACGGGGTCCCTTGTCAATAAT 540
Query 566 ATGTCTCCACCTACGAAAGCAGCATAGAGGAACATAAAATTTGGGCACTGTCGTGTGTGC 625
|||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 ATGTCTCCGCCTACAAAAGCAGCATAGAGGAACATAAAACTTGGGCACTGTCGTGTGTGC 600
Query 626 TTCTCTTAAATGAAGAA-----CTTAGGAATTTGTAATTTTTGAACCATTTTTGTTCTCT 680
|||||||| |||||||| ||||| ||||||||| ||||||||| || || |||||
Sbjct 601 TTCTCTTACATGAAGAAGAAAACTTAG-AATTTGTAAGTTTTGAACCGTTGTT-TTCTC- 657
Query 681 CCACCAAGTGATTAGTGTT 699
| ||||| |||||||||||
Sbjct 658 C-ACCAAATGATTAGTGTT 675
> Ahg495223 jgi|Araly1|495223|fgenesh2_kg.8__1039__AT5G51510.1
Length=675
Score = 1002 bits (542), Expect = 0.0
Identities = 635/679 (94%), Gaps = 9/679 (1%)
Strand=Plus/Plus
Query 26 CTCTTTCAATCTCCGATCAAATACAAACGCATACTTCCAATTTCGCCGGCGAAGATGCAG 85
|||||||||||||||||||||| ||||||||| ||||| |||||||||| ||||||||||
Sbjct 1 CTCTTTCAATCTCCGATCAAATCCAAACGCATTCTTCCGATTTCGCCGGAGAAGATGCAG 60
Query 86 CAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCATACCGC 145
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CAGAGAAAGCCGACGGCGGGTAGACCCAGTGGTACCGATGGATCCGATTTCTCGTACCGC 120
Query 146 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGTCGTTGACTCTCGTTACACGAAGGTCACTAAAGAAAAAGCTCGTCTCCGTCCTTTG 180
Query 206 ATCTTTGTTCAGGCTGCGATTTATGTAATCGGATTATCGTGTGCGTTTCTAACAACAACT 265
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||
Sbjct 181 ATCTTTGTTCAGGCTGCGATTTATTTAGTCGGATTATCGTGTGCGTTTCTGACAACGACT 240
Query 266 AAAAAGGATGAGAAGAACACCCTTGCTATTGCAGCTGCTGTTGCTGGCTTAGTGTGTTCA 325
||||||||||||| |||||||||||| |||||||| |||| |||||||||||||| ||||
Sbjct 241 AAAAAGGATGAGAGGAACACCCTTGCAATTGCAGCAGCTGCTGCTGGCTTAGTGTCTTCA 300
Query 326 TTGATAGGAGAATTAGGTTGCAGACGTAGCAGAGTAAACCTTTTGAGGCTCTACACGGCT 385
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||
Sbjct 301 TTCATAGGAGAATTAGGTTGTAGACGCAGCAGAGTAAACCTTTTGAGGCTCTATACGGCT 360
Query 386 GCATCAACCATTGTTATGGTTCTTTCTGTGTTTTGTGCTGTTAGGAGCAGATTAACCATG 445
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 361 GCATCTACCATTGTTATGGTTCTTTCAGTGTTTTGTGCTGTTAGGAGCAGATTAACTATG 420
Query 446 GAGGAACGCAATAGCTCTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 505
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGGAACGGAATAGCACTGGAACAACCGCGAAGCTTGAGCTCGCAGGTTTCATTTGTGCT 480
Query 506 CAATTAGGAGCGGTGGTGCAGATATTAGCGATCATCGTTACAGGGTCCCTTGTCAATAAT 565
||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 481 CAATTAGGAGCCGTGGTGCAGATATTAGTGATCATCGTTACGGGGTCCCTTGTCAATAAT 540
Query 566 ATGTCTCCACCTACGAAAGCAGCATAGAGGAACATAAAATTTGGGCACTGTCGTGTGTGC 625
|||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 541 ATGTCTCCGCCTACAAAAGCAGCATAGAGGAACATAAAACTTGGGCACTGTCGTGTGTGC 600
Query 626 TTCTCTTAAATGAAGAA-----CTTAGGAATTTGTAATTTTTGAACCATTTTTGTTCTCT 680
|||||||| |||||||| ||||| ||||||||| ||||||||| || || |||||
Sbjct 601 TTCTCTTACATGAAGAAGAAAACTTAG-AATTTGTAAGTTTTGAACCGTTGTT-TTCTC- 657
Query 681 CCACCAAGTGATTAGTGTT 699
| ||||| |||||||||||
Sbjct 658 C-ACCAAATGATTAGTGTT 675
> Ahg905975 jgi|Araly1|905975|Al_scaffold_0003_3103
Length=210
Score = 78.7 bits (42), Expect = 6e-14
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 80 ATGCAGCAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACC 121
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGCAGAGGAAGCCGACGGCGGGTAGACCCAGTGGTACC 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27715360659
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5