BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51520.1
Length=615
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495224 jgi|Araly1|495224|fgenesh2_kg.8__1040__AT5G51520.1 953 0.0
> Ahg495224 jgi|Araly1|495224|fgenesh2_kg.8__1040__AT5G51520.1
Length=615
Score = 953 bits (516), Expect = 0.0
Identities = 583/616 (95%), Gaps = 2/616 (0%)
Strand=Plus/Plus
Query 1 ATGTCGCAAGTCCTCTACTCTCTAACGATCGTCTTTGTTTTCTTCGCTTCGACAAACATC 60
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 1 ATGTCGCAAGTCCTCTACTCTCTAACGCTCGTCTTTGTTTTCTTCGCATCTACAAACATC 60
Query 61 CAGAAAACATCAGGCAGTGCATCATCCTACTCCCAAAACCACAAAACGTTCGTGAAAACG 120
|||| | |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGATATCATCAGCCAGTCCATCATCCTACTCCCAAAACCACAAAACGTTCGTGAAAACG 120
Query 121 GCTTGCAATTCGACAACATACCCCGACAAATGCTACAAGTCCTTATCCTCCTACTCATCG 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 GCTTGCAATTCGACAACATACCCCGACAAATGCTACAAGTCCTTATCCTCTTACTCATCG 180
Query 181 AATATCAAATCCGACCCGATCAAACTATGCACCACCGCGCTTAACCTCAACGTGAAATCC 240
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 AATATCAAATCCGACCCCATCAAGCTATGCACCACCGCGCTTAACCTCAACGTGAAATCC 240
Query 241 GCAAAGGAAGCAACGTCCGTTGTCTCTAAGCTTCTCAAAATGTCTCAGAAA-TCAACCGC 299
|||||||||||||| ||||| || ||||||||| |||||| |||||| ||| || |||||
Sbjct 241 GCAAAGGAAGCAACTTCCGTCGTTTCTAAGCTTTTCAAAAAGTCTCA-AAAGTCCACCGC 299
Query 300 CGGACGAAAGGGTAAAATGTTACCAGAGGCTCTTATACTCAAGGACTGTCTCGAGGAGAT 359
||||||||||| |||||||| ||| ||| ||||||| ||||||||||| |||||||||||
Sbjct 300 CGGACGAAAGGATAAAATGTCACCGGAGACTCTTATTCTCAAGGACTGCCTCGAGGAGAT 359
Query 360 GAAGGACACAATTATTGAGCTCAAGCAAGCGATCACGGAGATGAAGAATCTACAAGATGG 419
||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 360 GAAGGACGCAATTATTGAGCTCAAGCAAGCGGTCACGGAGATGAAGACTCTACAAGATGG 419
Query 420 TGGCTCTATGGCTGAGCATATAACGAACGTTAGGACGTGGGTGAGCTCGGCGTTGACCGA 479
||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 420 TGGTTCGATGGCTGAGCATATTACGAACGTTAGGACTTGGGTGAGCTCGGCGTTGACCGA 479
Query 480 CGAAGGGACTTGTACGGACGGGTTCGAGGAGGTGAAAGTGAATAAAGAAACAAAGAAGAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CGAAGGGACTTGTACGGACGGGTTCGAGGAGGTGAAAGTGAATAAAGAAACGAAGAAGAA 539
Query 540 GGTAAATAAGGTTGTTGAGGAACTTGCAACGACGACTAGTAATACTTTGGCGCTTATTAC 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 GGTAAATAAGGTTGTTGAGGAACTTGCAACCACGACTAGTAATACTTTGGCGCTTATTAC 599
Query 600 GAATCTACGTTACTAG 615
||||||||||||||||
Sbjct 600 GAATCTACGTTACTAG 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22492521030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5