BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51540.1
Length=2290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916775 jgi|Araly1|916775|Al_scaffold_0008_1526 3422 0.0
> Ahg916775 jgi|Araly1|916775|Al_scaffold_0008_1526
Length=2121
Score = 3422 bits (1853), Expect = 0.0
Identities = 2032/2121 (96%), Gaps = 2/2121 (0%)
Strand=Plus/Plus
Query 41 ATGTGGAAGCTGACGCGGCGACTGCAGCCGCATATCAATTCGACCCGATGGTTAGTCCGA 100
||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 1 ATGTGGAAGCTGACGCGGCGATTGCAGCCGTGTATCAATTCGACCCGATGGTTAATCCGA 60
Query 101 AATTTCCGGAATGGAGGAGCTGGAGACGCCACCGGTCTCTATGGCTTCGATCATCTAAAA 160
||||||||| ||||| ||||||| |||||||||||||||| || ||||||||||| |||
Sbjct 61 AATTTCCGGCGTGGAGAAGCTGGAAACGCCACCGGTCTCTACGGTTTCGATCATCTTAAA 120
Query 161 ACAGCTAAAGGGTTTCAGAGATTCGTTGCTGATGCCATTGAAAGGTCTGGTGAGTTGGTG 220
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGGCTAAAGGGTTTCAGAGATTCGTTGCTGATGCCATTGAAAGGTCTGGTGAGTTGGTG 180
Query 221 AGCTACATATCAGGAATGCCTTCGTCTCCAGAGATTATTAAAGCCATGGATGAGATTTCA 280
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 AGCTACATATCAGGAATGCCTTCGTCTCCAGAGATTATCAAAGCCATGGATGAGATTTCC 240
Query 281 GACACTGTTTGTTGTGTTGTTGACTCTGCTGAACTCTGTAGACAAACTCATCCTGACAGG 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACACTGTTTGTTGTGTTGTTGACTCTGCTGAACTCTGTAGACAAACTCATCCTGACAGG 300
Query 341 GAATTTGTTGAGGAAGCGAATAAAGCAGCAATTGAAATGAATGATTATCTACATCATCTT 400
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAATTTGTTGAGGAGGCGAATAAAGCAGCAATTGAAATGAATGATTATCTACATCATCTT 360
Query 401 AACACGAACCATACTTTGTATGCTGCGGTGAAAAAAGCAGAGCAAGATTCTAACTTGCTT 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AACACGAACCATACTTTGTATGCTGCGGTGAAAAAAGCAGAGCAAGATTCTAACTTGCTT 420
Query 461 ACCAAAGAAGCAAGTAGGACCGCACATCACCTTCGAATGGACTTTGAACGGGGTGGCATT 520
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 421 ACCAAAGAAGCAAGTAGGACCGCACATCACCTCCGAATGGACTTTGAAAGGGGTGGCATT 480
Query 521 CATCTAGACCCTGAGAAGCTAGATAAAGTGAATAACTTAACAACCAACATATTTCAGTTA 580
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CATTTAGACCCTGAGAAGCTAGATAAAGTGAATAACTTAACAACCAACATATTTCAGTTA 540
Query 581 TGCAGGGAGTTCAGCGAAAATATTGCTGATGATCCAGGACATGTTGATATATTTCCAGGA 640
|||||||||||||| |||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 541 TGCAGGGAGTTCAGTGAAAATATAGCTGATAATCCCGGACATGTTGATATATTTCCAGCA 600
Query 641 TCACGCATCCCTCGACATCTGCATCATCTTCTCAACCCTACCTACCGATCCACTTCAGGG 700
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 TCACGCATCCCTCGACATCTGCATCATCTCCTCAACCCTACCTACCGATCCACTTCAGGG 660
Query 701 GGCTCAAGAGGGTCTACAAGATCAGCGCATAAGTCGAAACAGAAAGGG-TTTCGAATAAA 759
||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 661 GGCTCAAGAGGGTCTACGAGATCAGCACATAAGTCGAAACAGAA-GGGATTTCGAATAAA 719
Query 760 TACTGATCCACGAACCGTTTCTTCCATTTTGCAATGGACATCAGACGAAGAGGTTAGAAA 819
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 TACTGATCCACGAACCCTTTCTTCCATTTTGCAGTGGACATCAGACGAAGAGGTTAGAAA 779
Query 820 AATGGTATACATCCAAGGGAACTCTGTTCCTCATGCAAATCACGGAGTTCTTGAGAAGCT 879
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 AATGGTATATATCCAAGGGAACTCTGTTCCTCATGCGAATCACGGAGTTCTTGAGAAGCT 839
Query 880 TATTGCTGCACGCCATGAGCTTTCCCAGATGATGGGGTGTAATTCTTATGCTGACATTAT 939
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 840 TATTACTGCACGCCATGAGCTTTCCCAGATGATGGGGTGTAATTCTTACGCTGACTTTAT 899
Query 940 GGTCGAGCCAAACCTAGCAAAATCCCCAAAGGTTGTGACATCCTTCCTACAAGAACTGAG 999
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 900 GGTCGAGCCAAACCTAGCAAAATCCCCAAAGGTTGTGACATCCTTCCTACAAGAGCTGAG 959
Query 1000 CAAGACAGTCAAACCGAAGGCGGACGAAGAATTCATAGCCATTAGAGACTTTAAAAGAGA 1059
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 CAAGACAGTCAAACCAAAGGCGGATGAAGAATTCATAGCCATTAGAGACTTTAAAAGAGA 1019
Query 1060 GAAATGTGGTAATCCATCTGCAGAGTTAGAGCCATGGGATGAAACTTACTACACTTCAAT 1119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 GAAATGTGGTAATCCATCTGCAGAATTAGAGCCATGGGATGAAACTTACTACACTTCAAT 1079
Query 1120 GATGAAATCCTCCATCAATGATGTGGACACTGCTGTTGTAGCATCATATTTTCCTCTGCC 1179
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 GATGAAATCCTCTGTCAATGATGTGGACACCGCTGTTGTAGCATCATATTTTCCTCTGCC 1139
Query 1180 ACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATAC 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATAC 1199
Query 1240 TATTCCTCTCGCGCCAGGTGAATCTTGGCACCCAAATGTGGTTAAACTGTCTCTTCATCA 1299
| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 1200 TGTTCCTCTCGCGCCAGGTGAATCTTGGCACCCAGATGTGCTTAAAATGTCTCTTCATCA 1259
Query 1300 CCCGGACGAGGGTGATCTCGGGTATCTTTACCTTGACTTATACTCAAGAAAAGGCAAGTA 1359
|||||||||||| |||||||| ||||||||||||||||| ||||| ||||||| ||||||
Sbjct 1260 CCCGGACGAGGGAGATCTCGGATATCTTTACCTTGACTTGTACTCGAGAAAAGACAAGTA 1319
Query 1360 CCCTGGGTGTGCTAGCTTTGCAATCAGAGGAGGACGCAAGATTTCTGAGACAGAATACCA 1419
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CCCTGGATGTGCCAGCTTTGCAATCAGAGGAGGACGCAAGATTTCTGAGACAGAATACCA 1379
Query 1420 ACTTCCTGTTATAGCTCTTGTTTGCAATTTTTCGCGAGCTTGTGATTCGTCAATTGTGAA 1479
||| |||||| | ||||| ||||||||||| ||||||||| ||||||| ||| | |||||
Sbjct 1380 ACTCCCTGTTTTGGCTCTCGTTTGCAATTTCTCGCGAGCTCGTGATTCATCAGTCGTGAA 1439
Query 1480 GCTTAATCACTCTGAAGTTGAAGTTTTGTTCCACGAATTCGGACATGCTCTTCACTCTCT 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GCTTAATCACTCTGAAGTTGAAGTTTTGTTCCACGAATTCGGACATGCTCTTCACTCTCT 1499
Query 1540 GCTCTCACGAACGGATTACCAACATTTTTCTGGTACCCGGGTGGCTCTTGACTTGGCAGA 1599
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1500 GCTCTCACGAACGGATTACCAACATTTTTCTGGTACCAGGGTGGCTCTTGACTTAGCAGA 1559
Query 1600 AATGCCTTCAAATCTATTTGAGTACTATGCATGGGACTATCGCCTCCTGAAGAGATTTGC 1659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 AATGCCTTCAAATCTATTTGAGTACTATGCATGGGACTATCGCCTCCTGAAGAGATTTGC 1619
Query 1660 CCGTCATTACTCGACCGGTGAGACAATACCCGAGAAGTTGGTTAATTCGTTACAAGGTGC 1719
||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1620 CCGTCATCACTCAACCGGTGAGACAATACCCGAGAAGTTGGTTAACTCGTTACAAGGTGC 1679
Query 1720 GAGGAACATGTTTGCAGCAACGGAAATGCAACGCCAGGTCTTTTATGCGCTGATCGACCA 1779
||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 1680 GAGGAACATGTTTGCAGCAACTGAAATGCAACGCCAGGTGTTTTATGCGCTGATTGACCA 1739
Query 1780 AATGTTGTTCGGGGAACAACCAGAGACAGCAAGAGATGTGAGTCACCTCGTGGCTGAACT 1839
|||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1740 AATGCTGTTCGGGGAACAACCGGAGACAGCAAGAGACGTGAGTCACCTCGTGGCTGAACT 1799
Query 1840 GAAACGGCAGCACACTAGCTGGAACCATGTTGAAGGAACACATTGGTATATCCGATTCAG 1899
||||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||
Sbjct 1800 GAAACGGCAACACACTAGCTGGAACCATGTCGAAGGAACACATTGGCATATTCGATTCAG 1859
Query 1900 TCACCTACTTAACTATGGAGCAGGGTACTATAGCTACTTATACGCTAAATGCTTTGCATC 1959
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1860 TCACCTACTTAACTATGGAGCAGGGTACTACAGCTACTTATACGCCAAATGCTTTGCATC 1919
Query 1960 GACGATATGGCAATCAATATGTGAAGAAGATCCGCTTTCGTTGAACACAGGAACATTGCT 2019
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1920 AACGATATGGCAATCAATATGCGAAGAAGATCCGCTTTCGTTGAACACAGGAACATTGCT 1979
Query 2020 GAGAGAGAAGTTCTTCAAACATGGAGGAGCCAAAGATCCAGCTGAGCTACTTACCGATCT 2079
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1980 GAGAGAGAAGTTCTTCAAACATGGAGGAGCCAAAGATCCAGCTGAGCTGCTCACCGATCT 2039
Query 2080 AGCAGGGAAAGAGATCATTAGTGTTCATGGTGAAGGCATAGTTCCTGCAACCACGTATCT 2139
|||||| ||||||||||||||||||||||||||||||||| | ||||||||||| || ||
Sbjct 2040 AGCAGGCAAAGAGATCATTAGTGTTCATGGTGAAGGCATAATCCCTGCAACCACATACCT 2099
Query 2140 TTTAAACGAGCTTAGACTATA 2160
|||||| ||||||||||||||
Sbjct 2100 TTTAAATGAGCTTAGACTATA 2120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86236314680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5