BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51545.1
Length=736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495227 jgi|Araly1|495227|fgenesh2_kg.8__1043__AT5G51545.1 965 0.0
> Ahg495227 jgi|Araly1|495227|fgenesh2_kg.8__1043__AT5G51545.1
Length=707
Score = 965 bits (522), Expect = 0.0
Identities = 626/675 (93%), Gaps = 12/675 (2%)
Strand=Plus/Plus
Query 5 AAAAATGGCGCTACAAATCCACTCTCCGTGTTCCTTCTCCACGAGACCCTATCATCTCTT 64
||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||
Sbjct 1 AAAAATGGCGCTACAAATCCACTCTTCGTGTTTCTTCTCGACGAGACCCTATCATCTCTT 60
Query 65 CTTCACTACCAGAAACCCTAGATTCGCAATCAAATGTCAAAATTCCCAAATCGAATCCGA 124
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CATCACTACCAGAAACCCTAGATTCGCAATCAAATGTCAAAATTCCCAAATCGAATCCGA 120
Query 125 TACAACAGAGGATCCATCTCGTTCAAAGAATTCAAGCTCTTCCGGCGTAGGATTCGGTTC 184
||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||||
Sbjct 121 GACAACAGAGGATCCAGCTCAACCCAAGAATTCAAGCGCTTCCGGCGTAGGATTCGGTTC 180
Query 185 ACCGGCGTCTTCTTCTTCGCCGGCTAAGAAATTGAGTGCGGCTACATCGGGAAACAAGAA 244
| ||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||
Sbjct 181 ATCGGCGTCTTCTTC-T--CCGGCTAAGAAATTGAGTGCAGCTACATCGGGAATTAAGAA 237
Query 245 AGGGAAAGGTAAGAGAGAGGTGAATCGGCGTGCTCCTGTGGAGAAACCTGTGTTCATGAG 304
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 238 AGGAAAAGGGAAGAGAGAGGTGAATCGGCGTGCTCCTGTGGAGAAACCTGTGTTTATGAG 297
Query 305 CGAAGAAGGAGCGGCCAAGGCAGAGGAGCAGAGACAAAACGAAAACGCGTTTCTTCTTAC 364
||| ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 298 CGAGGAAGGAGCGGCCAAGGCAGAGGAACAGAGACGGAACGAGAACGCGTTTCTTCTTAC 357
Query 365 TTGGCTTGGGCTTGGTATCGTCATCCTCATCGAAGGCATTATTCTCGCTGCTTCAGGATT 424
|||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 358 TTGGCTTGGGCTTGGTATCGTCATCCTCATCGAAGGGATTCTTCTCGCCGCTTCAGGATT 417
Query 425 CCTCCCAGAAGAGTTGGATAAGTTGTTTGTGAAGTATGTGTATCCAGTGTTCACTCCATC 484
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 418 CCTCCCCGAAGAGTTGGATAAGTTGTTTGTCAAGTATGTGTATCCAGTGTTCACTCCATC 477
Query 485 GGTTGTGTTATTCGTAGCTGGGACAACTGCATATGGAGTTCTGAAGTACATACAGAATGA 544
||||| |||||| || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 478 GGTTGGGTTATTTGTGGCTGGGACAACTGCATATGGAGTTTTGAAGTACATACAGAATGA 537
Query 545 GAAAATGAAGGGTCAAGAGTGATACTATACAACCATGGATATT-TGAGCTTTCTC-GTGA 602
||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||
Sbjct 538 GAAAATGAAGGGTCAAGAGTGATACTATACAACCATGGATATTCT-AGCTTTC-CAGTGA 595
Query 603 TTGATGTTAAATTAGTGTGTTGCAAGC-GGAGTTTGTGTAATGGTCGGACCTTAGTCATT 661
|||| ||||| |||||||||||| |||||||||||| || || |||||||||||||
Sbjct 596 TTGACGTTAA----GTGTGTTGCAAGTAGGAGTTTGTGTATTGATCTGACCTTAGTCATT 651
Query 662 GTATATGCAGAGAGA 676
|||||||||||||||
Sbjct 652 GTATATGCAGAGAGA 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27105393987
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5