BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51550.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949703 jgi|Araly1|949703|scaffold_801590.1 1722 0.0
> Ahg949703 jgi|Araly1|949703|scaffold_801590.1
Length=1056
Score = 1722 bits (932), Expect = 0.0
Identities = 1014/1054 (96%), Gaps = 3/1054 (0%)
Strand=Plus/Plus
Query 70 CACCCAATaaaaaaaaaaCCATGCATTCACTTCCGGTGAATCTCGTCCTCACCGTACTTA 129
||||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 2 CACCCAATAAAGAAAAAA-CATGCATTCACTTCCGGTGATTCTCGTCCTCACCGCACTTA 60
Query 130 CGGTGTTCCTAACATCACCGGCGCAAGTTATCGGATACCGTCCATATCCACCAAAAACCA 189
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 61 CGGTGTTCCTAACATCACCGGCGCAAGTCATCGGATACCGTCCATATCCTCCAAAAACCA 120
Query 190 ACGGCTCCGATCAAATCTTCGACGCTTCaaaaaaaTTCGAAGGCTCATCGAATCTCGTCC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGGCTCCGATCAAATCTTCGACGCTTCAAAAAAATTCGAAGGCTCATCGAATCTCGTCC 180
Query 250 GCCTCCGTTACCACATGGGTCCAGTCTTAACCAACAACATCACCGTTCACCCAATCTGGT 309
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 GCCTCCGCTACCACATGGGTCCAGTCTTAACCAACAACATCACGGTTCACCCAATCTGGT 240
Query 310 ACGGCACGTGGCAAAAATCCCAGAAGAAAATCATCCGTGAGTTCATTAACTCAATCTCAG 369
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 241 ACGGCACGTGGCAAAAATCCCAGAAAAAAATCATCCGTGAGTTTATAAACTCAATCTCAG 300
Query 370 CCGTTGGATCTAAACACCCTTCAGTCTCCGGTTGGTGGAAAACCGTACAGCTTTACACTG 429
||||||||||||||| ||||| || |||||||||||||||||||||||||| |||||||
Sbjct 301 CCGTTGGATCTAAACGTCCTTCCGTTTCCGGTTGGTGGAAAACCGTACAGCTCTACACTG 360
Query 430 ACCAAACTGGATCTAACATTACCGGTACGGTTCGTCTCGGTGAAGAGAAAAACGACCGGT 489
||||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||||||
Sbjct 361 ACCAAACCGGATCTAACATTTCCGGTACGGTTCGTCTCGGTGCAGAGAAAAATGACCGGT 420
Query 490 TTTATTCTCATGGTAAATCACTTACCCGGTTATCGATTCAATCCGTGATAAAATCCGCCG 549
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 421 TTTATTCTCATGGTAAATCACTAACCCGGTTATCGATTCAATCCGTGATAAAATCCGCCG 480
Query 550 TCACTTCTAGGTCTCGCCCGTTGCCGGTTAATCCCAAAAGCGGTTTATATCTTCTCCTCA 609
|| ||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 481 TCGGTTCAAGATCTCGTCCGTTGCCGGTTAATCCTAAAAGCGGTTTATATCTTCTCCTCA 540
Query 610 CCGCCGATGATGTCTACGTGCAAGATTTTTGCGGCCAGGTTTGTGGATTTCACTATTTCA 669
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCGCCGATGATGTCTACGTACAAGATTTTTGCGGCCAGGTTTGTGGATTTCACTATTTCA 600
Query 670 CGTTTCCGTCGATTGTTGGATTCACGTTACCGTACGCTTGGGTTGGAAACTCGGCGAAGC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGTTTCCGTCGATTGTTGGATTCACGTTACCGTACGCTTGGGTTGGAAACTCGGCGAAGC 660
Query 730 TTTGTCCCGGAGTTTGTGCTTATCCGTTCGCCGTACCGGCGTTTATACCGGGATTAAAAC 789
||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||
Sbjct 661 TTTGTCCCGGAGTTTGTGCTTATCCGTTCGCCGTACCGGAGTATATACCGGGGTTAAAAC 720
Query 790 CGGTTAAATCGCCTAACGGAGATGTTGGAGTAGATGGGATGATAAGTGTGATAGCTCACG 849
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGGTTAAATCGCCGAACGGTGATGTTGGAGTAGATGGGATGATAAGTGTGATAGCTCACG 780
Query 850 AGATTGCTGAGCTGGCGACGAATCCGTTGGTTAATGCTTGGTACGCAGGACCCGACCCGG 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGATTGCTGAGCTGGCGACGAATCCGTTGGTTAATGCTTGGTACGCAGGACCCGACCCGG 840
Query 910 TAGCTCCGGTTGAGATAGCGGATCTTTGTGAGGGTATTTATGGAACAGGAGGTGGTGGTT 969
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TGGCTCCGGTTGAAATAGCGGATCTTTGTGAGGGTATTTATGGAACAGGAGGTGGTGGTT 900
Query 970 CGTACACAGGACAGATGTTGAACGATCATAGTGGTGCCACGTATAATGTTAATGGGATCC 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGTACACAGGACAGATGTTGAACGATCATAGTGGTGCCACGTATAATGTTAATGGGATCC 960
Query 1030 GACGGCGGTATTTGATCCAGTGGTTATGGAGCCACGTTGTTAGTTACTGTACCGGACCCA 1089
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 961 GACGGCGGTATTTGATCCAGTGGTTATGGAGCCACGTGGTTAGTTACTGTACCGGACCCA 1020
Query 1090 ATGCGCTTGATTAGTGAATGAA-TGGTATGGTTT 1122
||||||||||||||| | |||| |||| ||||||
Sbjct 1021 ATGCGCTTGATTAGT-AGTGAAATGGTTTGGTTT 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5