BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51560.1
Length=2406
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952368 jgi|Araly1|952368|scaffold_6400002.1 3295 0.0
> Ahg952368 jgi|Araly1|952368|scaffold_6400002.1
Length=2084
Score = 3295 bits (1784), Expect = 0.0
Identities = 1986/2085 (95%), Gaps = 8/2085 (0%)
Strand=Plus/Plus
Query 105 CCAAACCCTA-GAAATAA-AATGACGGCGACACAAATGCTGcttcatcttcttcttcttc 162
|||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCAAACCCTAGGAAAAAACAATGACGGCGACACAAATGCTGCTTCATCTTCTTCTTCTTC 60
Query 163 cacttctcttccttcacttcAGCAACCAAGTCATG-GCAGAAATCACCGACGAGTTAGCG 221
||||||||||| || |||||| |||||||| | | |||||| | ||||| |||||| ||
Sbjct 61 CACTTCTCTTCGTTTGCTTCAGTAACCAAGT-AGGAGCAGAACTTACCGAGGAGTTAACG 119
Query 222 ACATTGATGGAGGTTAAAACAGAGCTTGACCCAGAAGACAAACACTTAGCTTCATGGAGT 281
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 120 ACATTGCTGGAGGTTAAAACAGAGCTAGACCCAGAAGACAAACACTTAGCTTCATGGAGT 179
Query 282 GTTAATGGAGATCTGTGTAAAGACTTTGAAGGTGTTGGTTGTGACTGGAAAGGACGAGTT 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATTAATGGAGATCTGTGTAAAGACTTTGAAGGTGTTGGTTGTGACTGGAAAGGACGAGTT 239
Query 342 TCTAACATATCTCTACAAGGGAAAGGCTTATCTGGTAAAATCTCTCCGAACATTGGAAAG 401
|||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 240 TCTAACATATCTTTACAAGGGAAAGGATTGTCTGGTAAAATCTCTCCGAACATTGGAAAG 299
Query 402 CTTAAACATTTGACGGGTTTGTTCTTGCACTACAATGCTCTTGTTGGAGATATTCCTAGA 461
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 300 CTTAAACATTTGACGGGTTTGTTCTTGCATTACAATGCTCTTGTCGGAGACATTCCTAGA 359
Query 462 GAACTTGGTAACTTGTCGGAACTTACGGATCTTTATCTCAATGTTAATAATCTCTCCGGT 521
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 360 GAACTTGGTAACTTGTCTGAGCTTACGGATCTTTATCTCAATGTTAATAATCTCTCCGGT 419
Query 522 GAGATTCCTTCAAACATTGGGAAGATGCAAGGCTTGCAAGTTTTGCAGCTCTGTTACAAC 581
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAGATTCCTTCAAACATTGGGAAGATGCAAGGCTTGCAAGTTTTGCAGCTCTGTTACAAC 479
Query 582 AATTTGACTGGAAGCATTCCTAGGGAGCTTAGTTCACTGAGGAAGCTGAGTGTTCTTGCT 641
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 AATTTGACAGGAAGCATTCCTAGGGAGCTTGGTTCACTGAGGAAGCTGAGTGTTCTTGCT 539
Query 642 CTTCAATCTAACAAACTCACTGGAGCTATACCTGCGAGTTTAGGAGATTTAAGTGCTCTA 701
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 CTTCAATCTAACAAACTCACTGGAGCTATACCTGCGAGTTTAGGAGAGATAAGTGCTCTA 599
Query 702 GAGCGGCTAGATTTGAGCTACAATCATTTGTTTGGTTCTGTACCAGGCAAGTTAGCTAGC 761
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 600 GAGCGTCTAGATTTGAGCTACAATCACTTGTTTGGTTCTGTACCAGGCAAGTTAGCTAGC 659
Query 762 CCTCCTCTGCTTCGAGTTCTCGACATCCGCAACAACTCCCTCACTGGCAATGTACCTCCT 821
|||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 660 CCTCCTTTGCTTCGAGTTCTCAACATCCGAAACAACTCCCTCACTGGCAATGTACCTCCT 719
Query 822 GTACTGAAGAGATTAAATGAAGGTTTTTCGTTTGAAAACAACTTGGGACTATGTGGAGCT 881
|||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 720 GTACTGAAGAGATTGAATGAAGGTTTTTCTTTTGAGAACAACTTGGGGCTATGTGGAGCT 779
Query 882 GAGTTCTCGCCGTTGAAATCTTGCAATGGCACAGCTCCTGAGGAACCTAAGCCATACGGT 941
|| || || || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 780 GAATTTTCACCTTTGAAATCTTGCAATGGCACAGCTCCTGAGGAACCTAAGCCGTACGGT 839
Query 942 GCAACCGTGTTTGGTTTTCCATCCCGGGATATACCAGAATCAGCTAATCTACGGTCACCT 1001
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 840 GCAACTGTGTTTGGTTTTCCATCCCGGGATATACCAGAATCAGCTAATCTTCGGTCACCT 899
Query 1002 TGTAATGGAACAAACTGTAATACTCCTCCAAAATCTCACCAAGGTGCAATCCTTATTGGT 1061
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 900 TGTAATGGAACAAACTGTAATGCTCCTCCAAAATCTCACCAAGGTGCAATCCTTATCGGT 959
Query 1062 TTGGTTGTCTCGACTATTGCATTGTCTGCTATTAGCATCCTCTTGTTCACGCATTATCGC 1121
|| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTAGTTGTTTCGACTATCGCCTTGTCTGCTATTAGCATCCTCTTGTTCACGCATTATCGC 1019
Query 1122 AGACGCAAACAGAAGCTTTCAACCACTTATGAAATGTCGGACAAC-CGTCTCAACACCGT 1180
||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||||||
Sbjct 1020 AGACGCAAACAGAAGCTTTCAACTGCTTATGAAATGTCGGAC-ACTCGTGTCAACACCGT 1078
Query 1181 AGGAGGAGGTTTTAGGAAGAACAATGGTTCTCCATTGGCCAGTCTTGAATATACTAATGG 1240
||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1079 AGGAGGAGGCTTTAGGAAGAACAATGGTTCTCCATTGGCCAGTCTTGAATATACCAGTGG 1138
Query 1241 TTGGGATCCACTTTCAGACAATAGGAATCTCAGTGTCTTTGCTCAAGAAGTTATCCAGAG 1300
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 TTGGGATCCTCTTTCAGACAATAGGAATCTTAGTGTCTTTGCTCAAGAAGTTATCCAGAG 1198
Query 1301 CTTTCGATTCAATCTTGAAGAGGTTGAAACTGCTACACAGTATTTCTCAGAAGTGAATTT 1360
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTTTCGATTTAATCTAGAAGAGGTTGAAACTGCTACACAGTATTTCTCAGAAGTGAATTT 1258
Query 1361 GCTTGGAAGAAGCAACTTCTCTGCGACTTACAAAGGAATCTTGAGAGATGGTTCTGCTGT 1420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1259 GCTTGGAAGAAGCAACTTCTCTGCGACTTACAAAGGAATCTTGAGAGATGGTTCGGCTGT 1318
Query 1421 AGCGATCAAACGGTTTAGTAAAACAAGTTGCAAATCTGAAGAACCTGAGTTCTTGAAAGG 1480
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1319 AGCGATCAAACGGTTTAGTAAAACCAGTTGCAAATCCGAAGAACCTGAGTTCTTGAAAGG 1378
Query 1481 ACTCAACATGTTGGCGTCTCTGAAACATGAAAACTTGTCAAAACTTAGAGGCTTCTGCTG 1540
| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1379 AGTCAACATGTTGGCGTCTCTGAAACATGAAAACTTGGCAAAACTTAGAGGTTTCTGCTG 1438
Query 1541 TTCAAGAGGCCGTGGAGAATGTTTTCTCATCTATGATTTTGCTCCTAATGGAAAT-TTAC 1599
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||| || |
Sbjct 1439 TTCAAGAGGCCGTGGAGAATGCTTTCTGATCTATGATTTTGCTCCCAATGGAAATCTT-C 1497
Query 1600 TGAGCTATCTTGATCTCAAAGATGGTGATGCGCATGTTCTTGATTGGTCCACGAGAGTAT 1659
|||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1498 TGAGCTATCTCGATCTCAAAGATGGCGATGCACATGTTCTTGACTGGTCCACGAGAGTAT 1557
Query 1660 CCATTGCTAAAGGCATCGCAAAAGGGATTGCTTATCTACATTCATACAAAGGAAGCAAGC 1719
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1558 CCATCGCTAAAGGCATCGCAAAAGGGATTGCTTATCTGCATTCATACAAAGGAAGCAAAC 1617
Query 1720 CAGCATTGGTTCACCAAAACATCTCAGCGGAGAAAGTTCTAATCGACCAGCGATACAGTC 1779
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1618 CAGCATTGGTTCACCAAAACATCTCAGCGGAGAAAGTCCTAATCGACCAGCGATACAATC 1677
Query 1780 CTCTACTCTCAAACTCAGGCCTCCACACACTTCTCACAAACGACATTGTCTTCTCTGCAC 1839
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1678 CGCTACTCTCAAACTCAGGCCTCCACACGCTTCTCACAAACGACATTGTCTTCTCTGCAC 1737
Query 1840 TCAAAGACAGTGCAGCAATGGGCTACCTCGCTCCAGAATACACCACAACCGGACGTTTCA 1899
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1738 TCAAAGACAGTGCAGCAATGGGCTATCTCGCCCCAGAATACACCACAACAGGACGTTTCA 1797
Query 1900 CCGAGAAAACCGATGTCTACGCTTTCGGGATTCTTGTGTTTCAGATAATCTCCGGGAAAC 1959
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 CCGAGAAAACGGATGTCTACGCTTTCGGGATTCTTGTGTTTCAGATAATCTCCGGGAAAC 1857
Query 1960 AGAAGGTTAGGCATCTTGTTAAGCTTGGAACTGAAGCTTGTAGGTTCAATGATTACATAG 2019
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1858 AGAAGGTTAGACATCTTGTTAAGCTTGGAACTGAAGCTTGTAGGTTCAATGATTACATCG 1917
Query 2020 ATCCAAATCTTCAAGGAAGATTCTTTGAATATGAAGCCACAAAGCTAGCTAGAATCGCGT 2079
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1918 ATCCAAATCTTCAAGGAAGATTCTTTGAATATGAAGCCACAAAGCTAGCTAGAATTGCTT 1977
Query 2080 GGCTATGCACTCATGAATCTCCCATTGAAAGACCATCCGTGGAAGCTGTAGTTCATGAGC 2139
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1978 GGCTGTGCACTCATGAATCTCCCATTGAAAGACCATCCGTGGAAGCTGTTGTTCATGAGC 2037
Query 2140 TAGGTAACTGTAGTAGCTGTCTCTGAGAACTCTCTCGAGGCAAAT 2184
| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2038 TCGGTAACTGTAGTAGCTGTCTCTGAGAACTCTCTTGAGGCCAAT 2082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90654783100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5