BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51570.1
Length=1249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952367 jgi|Araly1|952367|scaffold_6400001.1 1511 0.0
> Ahg952367 jgi|Araly1|952367|scaffold_6400001.1
Length=921
Score = 1511 bits (818), Expect = 0.0
Identities = 886/920 (96%), Gaps = 0/920 (0%)
Strand=Plus/Plus
Query 89 TTGAGAGTGCTGCGTAAAAATGGGTAATACGTATTGTATCTTAGGAGGTTGTATTGAACA 148
|||||||| ||||||| ||||||| || |||| ||||||| | || ||||||||||| ||
Sbjct 2 TTGAGAGTACTGCGTAGAAATGGGGAACACGTTTTGTATCCTCGGTGGTTGTATTGATCA 61
Query 149 AGCTAGCGTTGGTGTGGTCGAACGTTGGGGTCGATTCGAGCATATAGCTGAACCGGGATG 208
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 62 AGCTAGCGTTGGTGTGGTCGAACGTTGGGGCCGGTTCGAGCATATAGCTGAACCAGGATG 121
Query 209 TCATTTCTTCAACCCTCTCGCCGGTCAATGGCTCGCCGGAGTTCTCTCCACTAGGATCAA 268
|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 122 TCATTTTTTTAACCCTCTCGCTGGTCAATGGCTCGCCGGAGTTCTCTCCACTAGGATCAA 181
Query 269 ATCTCTTGATGTCAAAATTGAAACCAAAACTAAGGATAATGTGTTTGTGCAGCTGGTTTG 328
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CTCTCTTGATGTCAAAATTGAAACCAAAACTAAGGATAATGTGTTTGTGCAGCTGGTTTG 241
Query 329 TTCGATTCAGTATCGTGTAGTGAAAGCTAGTGCTGATGATGCGTTTTATGAGCTTCAAAA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TTCGATTCAGTATCGTGTAGTGAAAGCTAGTGCTGATGATGCGTTTTATGAGCTTCAAAA 301
Query 389 CCCTAAAGAGCAGATCCAAGCTTATGTCTTTGATGTGGTTAGGGCTTTGGTCCCAATGAT 448
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 302 CCCTAAAGAGCAGATCCAAGCTTATGTCTTTGATGTGGTTAGGGCTTTGGTTCCAATGAT 361
Query 449 GACGCTTGATGCTCTTTTTGAACAAAAGGGTGAAGTTGCCAAGTCTGTTCTTGAGGAGCT 508
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 362 GACGCTGGATGCTCTTTTTGAACAAAAGGGTGAAGTTGCCAAGTCTGTTCTTGAGGAACT 421
Query 509 TGAGAAGGTGATGGGTGCTTATGGATACAGCATTGAGCACATTCTAATGGTTGACATTAT 568
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 422 TGAGAAGGTGATGGGTGCTTATGGATACAGCATTGAGCATATTCTAATGGTTGACATTCT 481
Query 569 TCCTGATCCCTCTGTACGCAAGGCAATGAACGAAATCAATGCAGCACAAAGGCTCCAGCT 628
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 482 TCCTGATCCCTCTGTACGCAAGGCAATGAACGAAATCAATGCAGCACAAAGACTCCAGCT 541
Query 629 CGCGAGTGTTTACAAAGGAGAAGCAGAGAAGATTCTCCAAGTGAAGAGAGCCGAAGCAGA 688
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 542 CGCGAGTGTTTACAAAGGAGAAGCAGAGAAGATTCTCCAAGTGAAGAGAGCGGAAGCAGA 601
Query 689 AGCGGAAGCCAAGTACTTAGGTGGTGTCGGTGTGGCTAGACAAAGACAAGCAATCACAGA 748
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 602 AGCGGAAGCCAAGTACTTAGGTGGTGTCGGGGTGGCTAGACAGAGGCAAGCAATCACAGA 661
Query 749 CGGATTGAGGGAGAACATATTGAACTTTTCTGACAAAGTAGAAGGCACATCCGCCAAAGA 808
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 662 CGGATTGAGGGAGAACATATTGAACTTCTCTGACAAAGTAGAAGGCACATCAGCCAAAGA 721
Query 809 AGTGATGGACTTGATCATGATCACACAGTACTTTGACACTATTAGAGACCTTGGAAACTC 868
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 722 AGTGATGGACTTGATCATGATCACACAGTACTTTGACACTATAAGAGACCTTGGAAACTC 781
Query 869 GTCAAAGAACACAACGGTGTTTCTCCCACACGGTCCGGGACATGTGAGGGACATCAGCGA 928
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 782 GTCAAAGAACACAACGGTGTTTCTCCCGCACGGTCCGGGACATGTGAGGGACATCAGCGA 841
Query 929 CCAGATACGCAACGGTATGATGGAGGCGGCCGCTAGTACTCAGGTCAACGACGTCTAGAG 988
||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||||
Sbjct 842 CCAGATACGCAACGGTATGATGGAGGCAGCGGCTAGTGCTCCGGTCAACGACGTCTAGAG 901
Query 989 AGAGATTCACTTCGGCTTGT 1008
||||||||||||||||||||
Sbjct 902 AGAGATTCACTTCGGCTTGT 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46662450408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5