BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51580.1
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888008 jgi|Araly1|888008|Al_scaffold_0130_3 566 1e-160
> Ahg888008 jgi|Araly1|888008|Al_scaffold_0130_3
Length=828
Score = 566 bits (306), Expect = 1e-160
Identities = 460/532 (86%), Gaps = 20/532 (4%)
Strand=Plus/Plus
Query 431 GATTTCTCAAAACCGGGTTTGGACAAGAGAACCGGTTTC-GATTTCAAAC-CCAATTTCT 488
|||||||||||||||| |||||| ||| | | | || || || | | | || ||||
Sbjct 307 GATTTCTCAAAACCGGTTTTGGATGAGATAGTC-GACTCAGAAATC-ATCACGAAGTTCT 364
Query 489 CAAAACCGGGTTTGGACA-AGAGAACCGGCAT-AGAAGTCAACAGGGATTTCTCAAAATC 546
|||||||||||||||| | ||||| ||||| | ||| |||||| || ||||| | || |
Sbjct 365 CAAAACCGGGTTTGGA-AGAGAGAGCCGGC-TCGGAATTCAACAAGGTTTTCTTAGAACC 422
Query 547 GGGTTTGGAAGAGATAGTCGACTCTGAAATCCTCACGGTATTCTCAAAACCGGGTTTAGA 606
|||||||||||||| || |||||| ||| || || ||| |||| |||||||||||| ||
Sbjct 423 GGGTTTGGAAGAGAGAGCCGACTCAGAAGTCAACAAGGTTTTCTTAAAACCGGGTTTGGA 482
Query 607 TTGGAGA-A--CAGAGTCAGATATCATCATGGAATTCTCAAAACCGGGTTTAGAGGAGAG 663
|||| | | || ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 483 --AGAGATAGTC-GACTCAGAAATCATCATGGAATTCTCAAAACCGGATTTAGAGGAGAG 539
Query 664 AACCGAGTCAGAAAACATCACGGATTTCTGCAAACCAGGATTTGGCGTGTCTTGGGAACC 723
||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||
Sbjct 540 AACCGAGTCAGAAAACATCACGGGTTTCTGCAAACCGGGATTTGATTTGTCTTGGGAACC 599
Query 724 CGGTTTAGAGTTGCCCATGAGGATCAAGATGATGATGAAGTTGCAGAAAAGGAACATGAA 783
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 CGGTTTAGAGTTACCCATGAGGATCAAAATGATGATGAAGTTGCAGAAAAGGAACATGAA 659
Query 784 TAAAGAATTGGAAGTAGTCTTGTTGACAAGCTCCATAAGAGAATCTATCATCATCTTCTT 843
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 660 TAAAGAATTGGAAGTAGTCTTGTTGACAAGCTCCATAACAGAATCTATCATCATCTTCTT 719
Query 844 TAATCagaaaaatagagaaatagagagaagagagaaagtgagaaa--gaagaa-gaagga 900
|||||||||||| |||||| ||| ||| |||||| || |||||| || ||| ||| |
Sbjct 720 TAATCAGAAAAACAGAGAAG-AGAAAGA-GAGAGAGAGAGAGAAATTGA-GAAAGAATAA 776
Query 901 gaagaaagaTAGTTTGTGCGAAAGAGACGGGTTTGTGAGACCTTTAAATTGA 952
||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 777 GAAGAAAGATAGTTTCTGCGAAAGAGACGGCTTTGTGAGACCTTTAAATTGA 828
Score = 281 bits (152), Expect = 5e-75
Identities = 422/547 (77%), Gaps = 39/547 (7%)
Strand=Plus/Plus
Query 172 AAG-CACACACTCCATTTCGCTCTCATTCTCTTCCAAGCTCCCTTTCTCATCATTCTTTG 230
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 11 AAGTCACACACTCCATTTCGCTCTCATTCTCTTCCAATCTCCCTTTCTCATCATTCTCTG 70
Query 231 CAATGTCTGAACCGGGTTCCAAACCGGGTTTGGAGGTCAACGCTTTCTCCGAACCGGCGG 290
|| |||||||||| | |||||| || |||| || ||| ||||||||||
Sbjct 71 TAAAATCTGAACCGG-----A-------TTTGGATGTTAACGATTGCTCAGAACCGGCGG 118
Query 291 GTTTGGAGGAGAGACTAGACTTAGATATCAGCC-CTGGTT-CTTGTAAACCGGTATTAGA 348
|||||||||||| | | |||||| |||||| || | |||| |||||||||||| |||||
Sbjct 119 GTTTGGAGGAGACATTCGACTTAAATATCA-CCTC-GGTTTCTTGTAAACCGGGCTTAGA 176
Query 349 TGTGAGATTCGACTTAGATATCAGCCCCGGTTCTTGT-AAA-CCTGGATTAGATGTGAGA 406
|||||||| ||||||||| |||| | | | || | || ||| || || || || || |
Sbjct 177 TGTGAGATACGACTTAGAGATCAACACAGATT-T-GTCAAAACCGGGTTTGGACAAGATA 234
Query 407 TTCTTCGACTTAGAGATCAAAACAGATTTCTCAAAACCGGGTTTGG-ACAAGAGAACCGG 465
| || ||| || |||| | |||||| ||||||||||||||| | | |||||||||
Sbjct 235 A-C--CGTCTTCGATTTCAACCCTGATTTCCCAAAACCGGGTTTGGGAGA-GAGAACCGG 290
Query 466 TTTC-GATTTCAA-ACCCAATTTCTCAAAACCGGGTTTGGACAAGAGAACCGGCAT-AGA 522
|| | || ||||| | | |||||||||||||| |||||| ||| | || | | |||
Sbjct 291 TT-CAGAATTCAACAATGA-TTTCTCAAAACCGGTTTTGGATGAGATAGTCGAC-TCAGA 347
Query 523 AGTCAACAGGGATTTCTCAAAATCGGGTTTGGAAGAGATAGTCGACTCTGAAATCCTCAC 582
| ||| || | | ||||||||| ||||||||||||||| || || ||| ||| || ||
Sbjct 348 AATCATCACGAAGTTCTCAAAACCGGGTTTGGAAGAGAGAGCCGGCTCGGAATTCAACAA 407
Query 583 GGTATTCTCAAAACCGGGTTTAGATTG-GAGAACAGAGTCAGATA-TCATCATGGAATTC 640
||| |||| | |||||||||| || | |||| | || ||||| | ||| || || |||
Sbjct 408 GGTTTTCTTAGAACCGGGTTTGGAA-GAGAGAGCCGACTCAGA-AGTCAACAAGGTTTTC 465
Query 641 TCAAAACCGGGTTTAGAGGAGAGAACCGAGTCAGAAAACATCACGGATTTCTGCAAA-CC 699
| |||||||||||| || |||| | ||| ||||||| ||||| ||| |||| |||| ||
Sbjct 466 TTAAAACCGGGTTTGGAAGAGATAGTCGACTCAGAAATCATCATGGAATTCT-CAAAACC 524
Query 700 AGGATTT 706
||||||
Sbjct 525 -GGATTT 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35339944059
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5