BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51590.1
Length=1740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495229 jgi|Araly1|495229|fgenesh2_kg.8__1045__AT5G51590.1 1917 0.0
Ahg945561 jgi|Araly1|945561|scaffold_701790.1 422 5e-117
Ahg888006 jgi|Araly1|888006|Al_scaffold_0130_1 237 2e-61
> Ahg495229 jgi|Araly1|495229|fgenesh2_kg.8__1045__AT5G51590.1
Length=1634
Score = 1917 bits (1038), Expect = 0.0
Identities = 1299/1414 (92%), Gaps = 61/1414 (4%)
Strand=Plus/Plus
Query 151 TCT-TCCTTAATTGTCGGAATCAGAATCTTTTCAGATGGAGGAGAGAGAAGGAACTAACA 209
||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 103 TCTGTCTTTAATTGTCGGAATCAGAATC-TTTCAGATGGAGGAGAGAGAAGGAACTAACA 161
Query 210 TCAACAACATCCCAACCAGTTTTGGTCTGAAACAACATGAAACT-C-C-TCTTCCTCCTC 266
| || |||||||||||||||||||||||||||| || | | |||||||||||
Sbjct 162 T------CA---GAACCAGTTTTGGTCTGAAACAACATGAAGCTCCTCTTCTTCCTCCTC 212
Query 267 CTGGTT---AC------CCACCACGGTCTGAAAACCCTAATCTTTTTCCGGTGGGTCAAT 317
|||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 CTGGTTACCACATGGAACCACCACGGTCTGAAAACCCTAATCTTTTTCCGGTGGGTCAAT 272
Query 318 CCAGCACTTCCT-C--CGCCGCCGCCGCGGTGAAACCTTCTGAGAATGTTGCTCCTCCTT 374
|||||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 273 CCAGCACTTCCTCCGTCGCCGCCGCCGCCGTGAAAGCTTCTGAGAATGTTGCTCCTCCTT 332
Query 375 TTAGCTTAACAATGCCGGTGGAGAATTCTTCTTCTGAGTTGAAGAAGAAGAGAGGGAGAC 434
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 333 TTAGCTTAACAATGCCGGTGGAGAATTCTTCTTCTGACTTGAAGAAGAAGAGAGGGAGAC 392
Query 435 CAAGAAAGTATAACCCTGACGGCTCACTCGCTGTGACTCTCTCTCCTATGCCTATCTCAT 494
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 393 CGAGAAAGTATAACCCTGACGGCTCACTCGCTGTGACTCTCTCTCCAATGCCTATCTCCT 452
Query 495 CCTCCGTTCCGTTGACGTCGGAGTTTGGTTCTCGGAAACgaggaagaggtcgaggaagag 554
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 453 CCTCCGTTCCGTTGACGTCTGAGCTTGGTTCTCGGAAACGAGGAAGAGGGCGAGGAAGAG 512
Query 555 gcagaggaagaggacgaggacgtggacaaggacaaggaagCAGAGAGCCCAATAACAACA 614
||||| | || | |||||||| ||||||||||| |||||||| || | | |||
Sbjct 513 GCAGA-G--GA--A-GAGGACGT------GGACAAGGAAGTAGAGAGCCTAACAGCGACA 560
Query 615 ACAACGACAACAATTGGCTCAAGAATCCTCAGATGTTCGAATTTAACAACAACACTCCTA 674
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 561 ACAACAACAACAATTGGCTCAAGAATCCTCAGATGTTCGAATTT---AACAACACTCCTA 617
Query 675 CTTCTGGTGGAGGAGGACCTGCTGAAATTGTCAGTCCAAGTTTTACACCTCATGTGCTCA 734
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 618 GTTCTGGAGGTGGAGGACCTGCTGAGTTTGTCAGTCCAAGTTTTACACCTCATGTGCTCA 677
Query 735 CAGTAAATGCCGGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGC 794
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 CAGTAAACGCCGGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGC 737
Query 795 GTGCTATTTGTATTCTTTCAGCGAACGGTCCCATATCCAATGTTACACTTCGTCAATCTA 854
|||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 738 GTGCTATTTGCATTCTTTCAGCTAACGGTCCCATTTCCAATGTTACAATTCGTCAATCTA 797
Query 855 TGACATCTGGTGGTACTCTCACTTATGAGGGTCATTTTGAGATTCTTTCTTTGACGGGTT 914
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 798 TGACATCTGGTGGTACTCTCACTTATGAGGGTCATTTTGAGATTCTGTCTTTGACGGGTT 857
Query 915 CGTTTATACCAAGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGTGGGATGAGTGTCTCTC 974
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 858 CGTTTATACCAAGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGCGGGATGAGTGTGTCTC 917
Query 975 TTGCAGGACAAGATGGTCGTGTCTTTGGTGGTGGACTTGCTGGTCTCTTTATTGCCGCTG 1034
||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 918 TTGCAGGACCAGATGGTCGTGTCTTTGGTGGTGGACTTGCCGGTCTCTTTATAGCCGCTG 977
Query 1035 GTCCTGTTCAGGTAATGGTAGGGAGTTTTATAGCGGGTCAGGAGGAAT--C-g---cagc 1088
||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||
Sbjct 978 GTCCTGTTCAGGTAATGGTGGGGAGTTTTATAGCGGGTCAGGAGGAATCGCAGCAACAGC 1037
Query 1089 agcagcagcagcagATAAAGAAGCAAAGAAGGGAAAGACTCGGGATCCCGACAACAACAC 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 AGCAGCAGCAGCAGATAAAGAAGCAAAGAAGGGAAAGACTCGGGATCCCGACAACAACAC 1097
Query 1149 AAGCTTCTAATATCTCATTCGGTGGCTCAGCGGAAGATCCTAAGGCTAGATACGGGCTCA 1208
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||
Sbjct 1098 AAGCTTCTAATATCTCATTCGGTGGATCAGCAGAAGATCCAAAGGCTAGATACGGTCTCA 1157
Query 1209 ACAAGCCTGTTGTTATTCAGCCACCACCGGTGTCTGCACCACCTGTGTCCTTTTCGCATG 1268
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1158 ACAAGCCTGTTGTTATTCAGCCACCACCTGTGTCCGCACCACCTGTGTCCTTTTCGCATG 1217
Query 1269 AACCAAGTACTAACACCGTCCATGGTTACTATGCAAATAACACAGCTAACCATATCAAGG 1328
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AGCCAAGTACTAACACAGTCCATGGTTACTATGCAAATAACACAGCTAACCATATCAAGG 1277
Query 1329 ATCTCTTCTCTTCCCTCCCTGGAGAAGAT-AGGGAAGAAGATGAGGATGATTTAGAAGGT 1387
|||||||||| ||||||| | ||||||| ||| |||||||||| || ||||||||||||
Sbjct 1278 ATCTCTTCTCACCCCTCCCAGAAGAAGATGAGG-AAGAAGATGAAGAGGATTTAGAAGGT 1336
Query 1388 GAAGATGATGAAGAATTCGGAGGCCATAGCGAATCTGACACCGAGGTTCCAAGCTGATGA 1447
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GAAGATGATGAAGAATTTGGAGGCCATAGCGAATCTGACACCGAGGTTCCAAGCTGATGA 1396
Query 1448 TCGATGGAAAGAATCCGACATAT-ATGTGTTATGAATCTTGAGTTGTT------TT---A 1497
||||||||||||||||||||| | || || || |||||||||||||| || |
Sbjct 1397 TCGATGGAAAGAATCCGACAT-TGATCAGTCAT-AATCTTGAGTTGTTGCGACATTTTTA 1454
Query 1498 TTTCGGTGTCTTCAGAtttttttAGAGCGTAATG 1531
||||||||||||||||||||||||||| ||||||
Sbjct 1455 TTTCGGTGTCTTCAGATTTTTTTAGAGTGTAATG 1488
Score = 200 bits (108), Expect = 3e-50
Identities = 138/151 (91%), Gaps = 7/151 (5%)
Strand=Plus/Plus
Query 1570 TAAACAGAGATATTTCACTAAAAGTTAGGGTTTACTAGAGGATGTAATCTTTAGGGTTCT 1629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 TAAACAGAGATATTTCACTAAAAGTTAGGGTTTACTAGAGGATGTAATCTTTAGGGTTCT 1548
Query 1630 TTGACTTGTGTCTTTCTTTTAATCCTCA-GATGGTTGTTGTAGG-CTTGTAGCCAATCTT 1687
|||||||||||||||||||| |||| || | |||||||||||| ||| | || |||
Sbjct 1549 TTGACTTGTGTCTTTCTTTTTATCCCCAAG-TGGTTGTTGTAGAACTTCAA---AA-CTT 1603
Query 1688 AGTGTGTGTTCAAACTCTCTCCTTCAATCAA 1718
|||||||||||||||||||||||| ||||||
Sbjct 1604 AGTGTGTGTTCAAACTCTCTCCTTAAATCAA 1634
Score = 178 bits (96), Expect = 1e-43
Identities = 111/117 (95%), Gaps = 6/117 (5%)
Strand=Plus/Plus
Query 1 CTGAATCTTACGTCCTCTGGATCTTTCTtctctctctctctctctTGTCTATACTTTAAG 60
||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 1 CTGAATCTTACGTCCTCTGGA----TCTT-TCT-TCTCTCTCTCTTGTCTATACTTTAAG 54
Query 61 TGTCTGTCTGAAGAAGCTTGAATCTGTCGTGATCATCAAGATTCAAGTTCTGTCTTT 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 TGTCTGTCTGAAGAAGCTTGAATCTGTCGTGATCATCAAGATTCAAGTTCTGTCTTT 111
> Ahg945561 jgi|Araly1|945561|scaffold_701790.1
Length=1255
Score = 422 bits (228), Expect = 5e-117
Identities = 354/415 (85%), Gaps = 7/415 (2%)
Strand=Plus/Plus
Query 688 AGGACCTGCTGAAATTGTCAGT-CCAAGTTTTACACCTCATGTGCTCA-CAGTAAATGCC 745
|||| ||||||| |||| || |||| ||||| |||||||| || | | || || |||
Sbjct 479 AGGAACTGCTGATTTTGTTGGTGCCAA-CTTTACTCCTCATGTACTGATC-GTCAACGCC 536
Query 746 GGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGCGTGCTATTTGT 805
|| ||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 537 GGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCGTGCTATCTGC 596
Query 806 ATTCTTTCAGCGAACGGTCCCATATCCAATGTTACACTTCGTCAATCTATGACATCTGGT 865
|| |||||||| || |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 597 ATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACTCTTCGTCAATCTATGACATCCGGC 656
Query 866 GGTACTCTCACTTATGAGGGTCATTTTGAGATTCTTTCTTTGACGGGTTCGTTTATACCA 925
|||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||| | |
Sbjct 657 GGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACTGGTTCGTTTATGCAA 716
Query 926 AGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGTGGGATGAGTGTCT-CTCTTGCAGGACA 984
| || ||| ||||| ||||| ||||||||||| |||||||| | | ||||||||||
Sbjct 717 AATGACTCTGGGGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGC-CTTGCAGGACC 775
Query 985 AGATGGTCGTGTCTTTGGTGGTGGACTTGCTGGTCTCTTTATTGCCGCTGGTCCTGTTCA 1044
||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||| ||
Sbjct 776 AGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTGGTCCTGTCCA 835
Query 1045 GGTAATGGTAGGGAGTTTTATAGCGGGTCAGGAGGAATCgcagcagcagc-agca 1098
|||||||||||||| ||||||||| ||||| ||| | || |||| | ||| ||||
Sbjct 836 GGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGCTGGAGCTAGCA 890
> Ahg888006 jgi|Araly1|888006|Al_scaffold_0130_1
Length=180
Score = 237 bits (128), Expect = 2e-61
Identities = 161/176 (91%), Gaps = 5/176 (3%)
Strand=Plus/Minus
Query 1321 TATCAAGGATCTCTTCTCTTCCCTCCCTGGAGAAGATAG-GGAAGAAGATGAGGATGATT 1379
|||||||||||||||||| ||||||| | ||||||| | |||||||||||| || ||||
Sbjct 180 TATCAAGGATCTCTTCTCACCCCTCCCAGAAGAAGAT-GAGGAAGAAGATGAAGAGGATT 122
Query 1380 TAGAAGGTGAAGATGATGAAGAATTCGGAGGCCATAGCGAATCTGACACCGAGGTTCCAA 1439
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TAGAAGGTGAAGATGATGAAGAATTTGGAGGCCATAGCGAATCTGACACCGAGGTTCCAA 62
Query 1440 GCTGATGATCGATGGAAAGAATCCGACATAT-ATGTGTTATGAATCTTGAGTTGTT 1494
||||||||||||||||||||||||||||| | || || || ||||||||||||||
Sbjct 61 GCTGATGATCGATGGAAAGAATCCGACAT-TGATCAGTCAT-AATCTTGAGTTGTT 8
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65286679930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5