BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G51640.1
Length=1830
Score E
Sequences producing significant alignments: (Bits) Value
Ahg495231 jgi|Araly1|495231|fgenesh2_kg.8__1047__AT5G51640.1 2375 0.0
Ahg945556 jgi|Araly1|945556|scaffold_701785.1 935 0.0
> Ahg495231 jgi|Araly1|495231|fgenesh2_kg.8__1047__AT5G51640.1
Length=1789
Score = 2375 bits (1286), Expect = 0.0
Identities = 1673/1847 (91%), Gaps = 77/1847 (4%)
Strand=Plus/Plus
Query 1 AAACTCCCAGATCTTGTCGA-TTT-ATTTATTCCTCTCCAAAGCAAAAGCTTCTTCGATC 58
|||||||||||||||||||| ||| || ||||||| |||||||||||| | |
Sbjct 1 AAACTCCCAGATCTTGTCGATTTTAATAAATTCCTCACCAAAGCAAAAG------C--T- 51
Query 59 GTCCTTGTCTCGTTTTCAATTCTAAATGTTTTGTGCAGAAAAATCATGACTTTGGCTTCT 118
| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 52 -T-C---T-TCGTTTTCAATTCTAAATGTTGTGTGCAGAAAAATCATGACTTTGGCTTCT 105
Query 119 CCACGAGTTTCAAATTCAAAGACGACTGTGTTGTTGTTTCCTCGAAAAGTTTCTTCAATT 178
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 106 CCACGAGTTTCAAATTC---GAAGACTGTGTTGTTGTTTCCTCGGAAAGTTTCTTCAATT 162
Query 179 GCATTTGCTATTGGTGGATTAACTTCTTTCGTCATCTTCGCTTCTCTGCTTCTTTTCACG 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GCATTTGCTATTGGTGGATTAACTTCTTTCGTCATCTTCGCTTCTCTGCTTCTTTTCACT 222
Query 239 TATCCCATTGGTTCCTCTGTTACTGACTATTTCTACAGAACAGAGACCACTCAAAACGTC 298
|||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||
Sbjct 223 TATCCCATTGGTTCTTCAGTTACTGACTATCTCTACAGAACAGAGACCACTCAAAATGTC 282
Query 299 CAGTTTCACCATAGTATCCATGATCCTGATCGTAACCCATCTCCTGTTTCTAGCTCAGAG 358
|| ||| |||| ||||| |||||| | | | |||||||||| |
Sbjct 283 CAATTTTACCACAGTAT---TGATCC---T-G------A--------TTCTAGCTCACAC 321
Query 359 TCACCACCAGTATTGACACAAGATAGTGATGATAAAGTGCTTCCCAAGGGA-TC-TCATG 416
||||||||| ||||||||||||| |||||| |||||||||||||||| ||| || || |
Sbjct 322 TCACCACCATTATTGACACAAGACAGTGATCATAAAGTGCTTCCCAA-GGATTCTTC-GG 379
Query 417 ATTCGAATGATGTTAGATTAGGTGAAGAAACAAACTCAGGGAAGTCTTCAAATGTTTCCA 476
||||||| |||||||||||||| |||| ||| | ||||||||||||||||||||
Sbjct 380 ATTCGAACGATGTTAGATTAGGCGAAG----AAA--C---GAAGTCTTCAAATGTTTCCA 430
Query 477 T---TGATGAAGAAGCTACACAAGA-TCATGTAGAAACAGAATGTGATTTATATCATGGT 532
| ||| ||||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 431 TGGATGAAGAAGAAGCTACACAAGATTC-TGTAGAAACAGAATGTGATCTATATCATGGT 489
Query 533 AACTGGTTTTATGATCCGATGGGACCGTTGTATACAAACAACTCTTGTCCTCTTTTGACA 592
|||||||||| |||||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 490 AACTGGTTTTTTGATCCAATGGGACCGGTGTACACAAACAACTCTTGTCCTCTTTTGACA 549
Query 593 CAGATGCAAAACTGTCAGGGCAATGGAAGACCTGACAAGGGGTATGAAAACTGGAGATGG 652
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 550 CAGATGCAGAACTGTCAGGGTAATGGAAGACCTGACAAGGGGTATGAAAACTGGAGATGG 609
Query 653 AAACCGTCTCAGTGTGATCTTCCGCGTTTTGATGCTAAGAAATTTCTTGAGCTAATGAGA 712
||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 610 AAACCGTCTCAGTGTGATCTTCCACGGTTTGATGCCAAGAAATTTCTCGAGCTAATGAGA 669
Query 713 GGCAAGACACTAGCTTTTATAGGCGATTCAGTAGCTCGTAATCAGATGGAGTCCATGATG 772
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 670 GGCAAGACACTAGCTTTTATAGGTGATTCAGTGGCTCGTAATCAGATGGAGTCCATGATG 729
Query 773 TGTCTTCTTTGGCAGGTAGAAACTCCGGTTAACCGTGGGAA-CAGGAAGATGCAGAGATG 831
|| |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 730 TGCCTTCTTTGGCAGGTAGAAACTCCGGTTAACCGTGGGAATC-GAAAGATGCAGAGATG 788
Query 832 GTATTTCAGGTCATCATCGGTGATGATAGCTCGGATGTGGTCATCTTGGCTGGTCCATCA 891
|||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 789 GTATTTCAGGTCATCATCAGTAATGATAGCTCGGATGTGGTCATCTTGGCTCGTTCATCA 848
Query 892 GTTCAATGAACCGTTTGGTTTTGCTACAGATGGTGTAACTAAACTCAAGCTTGACCAACC 951
|||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 849 GTTCAACGAACCGTTTGGTTTTGCTACTGATGGTGTAACCAAACTCAAGCTCGACCAACC 908
Query 952 CGATGAGCGCATAATTGAAGCTCTTCCGAATTTCGATGTGGTTGTACTTTCATCAGGTCA 1011
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 909 TGACGAGCGCATAATTGAAGCTCTTCCGAAATTCGATGTGGTTGTACTTTCATCGGGTCA 968
Query 1012 CTGGTTTGCAAAACAGTCTGTCTATATTTTAAATGACCAGATTGTGGGAGGCCAGTTATG 1071
|||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 969 CTGGTTTGCAAAACAGTCTGTCTACATTTTAAATGACGAGATTGTTGGAGGCCAGTTATG 1028
Query 1072 GTGGCCAGACAAATCAAAACCCGAAAAGATTAACAACGTCGAAGCATTTGGGATCTCTGT 1131
|||||| |||||||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 1029 GTGGCCGGACAAATCAAAACCAGCAAAGATTAACAACGTCAAAGCATTTGGGATCTCTGT 1088
Query 1132 AGAAACAATCATAAAGGCAATGGCTAAACACCCAAACTACACGGGTCTGACCATCTTACG 1191
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1089 AGAAACAATCCTAAAGGCAATGGCTAAACACCCAAACTACACCGGTCTGACCATCTTACG 1148
Query 1192 TACTTGGTCGCCTGATCATTATGAAGGCGGTGCGTGGAACACTGGTGGATCATGCACAGG 1251
|||||||||||||||||| ||||| |||||||| ||||||||||||||||| || || ||
Sbjct 1149 TACTTGGTCGCCTGATCACTATGAGGGCGGTGCATGGAACACTGGTGGATCGTGTACTGG 1208
Query 1252 TAAAGTAGAGCCGCTTCCTCCTGGGAATTTAGTTACAAACGGGTTCACAGAGATAATGCA 1311
|||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1209 CAAAGTAGAGCCGCTTCCTCCCGGGAAGTTAGTTACAAACGGATTCACAGAGATAATGCA 1268
Query 1312 CGAGAAGCAAGCAACAGGGTTTCACCGTGCTGTCGCGGATGATAAGCTCGGGAATAGATC 1371
|||||||||| |||||||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 1269 CGAGAAGCAAACAACAGGGTTTCACCGAGCTGTGGCGGATGATAAACTCGGCAATAGATC 1328
Query 1372 GAAGAAGCTGAAGCTAATGGATATCACTGAGGCTTTCGGGTATCGCCACGACGGTCATCC 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GAAGAAGCTGAAGCTAATGGATATCACTGAGGCTTTCGGGTATCGCCACGACGGTCATCC 1388
Query 1432 TGGTCCATACAGGAGTCCTGACCCGAAAAAGATCACAAAACGTGGACCAGACGGTCAGCC 1491
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 TGGCCCGTACAGGAGTCCTGACCCGAAAAAGATCACAAAACGTGGACCAGACGGTCAGCC 1448
Query 1492 TCCTCCACAAGACTGTTTGCATTGGTGCATGCCAGGGCCAGTGGACACATGGAACGAGAT 1551
||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1449 TCCTCCACAAGACTGCTTGCATTGGTGCATGCCGGGGCCGGTAGACACATGGAACGAGAT 1508
Query 1552 GGTTCTGGAGATTATTAGGAGAGATTTTGAAGGCAGACAAAGTTCACCATCATCTTGATC 1611
||||||||||||||| || |||||||| |||||||||| |||| ||||||||||||||||
Sbjct 1509 GGTTCTGGAGATTATAAGAAGAGATTTGGAAGGCAGACGAAGTACACCATCATCTTGATC 1568
Query 1612 TAGGAGCAAA-AGATATATTTAT--ATATA--CGTACAAGATCATTTATTCATACCACGG 1666
|||||||||| |||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct 1569 TAGGAGCAAAGAGATATATTTATTTATATATACGTACAAGATAATTTATTCATACCACGG 1628
Query 1667 ATTAGTTGATTTAAGGATTTCTAAAGTATATTCATTACACAATACACACACTTGTAGGTC 1726
| |||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 1629 AGTAGTTGATCTAAGGATTTCTAATTTATATTCAT-ACACAATACACTCACTTGTAGGTC 1687
Query 1727 TCTCttttt-ttACGTACAATGTAACTTAAAGCAAACATAAGAGTTCTATT-A---GATT 1781
||| ||||| |||| ||||| | |||||||||||| |||||||| |||| | |||
Sbjct 1688 TCTGTTTTTCTTACATACAA---A-CTTAAAGCAAACGTAAGAGTTTTATTTATTAGATC 1743
Query 1782 AGTTACTCTTTTAGATGAAAGAATCTTTATAATCATAATTTTTGTTT 1828
||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1744 AGTTACTCTTTTAGATGAATGAATCTT-ATAATCATAATTTTTGTTT 1789
> Ahg945556 jgi|Araly1|945556|scaffold_701785.1
Length=1645
Score = 935 bits (506), Expect = 0.0
Identities = 896/1082 (83%), Gaps = 35/1082 (3%)
Strand=Plus/Plus
Query 510 CAGAATGTGATTTATATCATGGTAACTGGTTTTATGATCC-GATGGGACCGT-TGTATAC 567
|||| |||||||| ||||| |||| |||||||||||||| | |||||| | |||| ||
Sbjct 526 CAGAGTGTGATTTGTATCAAGGTAGTTGGTTTTATGATCCTG-GGGGACC-TCTGTACAC 583
Query 568 AAACAACTCTTGTCCTCTTTTGACACAGATGCAAAACTGTCAGGGCAATGGAAGACCTGA 627
||||||||||| ||| | ||||||||||||| || || ||||||||||||||||||||
Sbjct 584 GAACAACTCTTGCCCTGTCCTGACACAGATGCAGAATTGCCAGGGCAATGGAAGACCTGA 643
Query 628 CAAGGGGTATGAAAACTGGAGATGGAAACCGTCTCAGTGTGATCTTCCGCGTTTTGATGC 687
||||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 644 TAAGGGATATGAGAACTGGAGATGGAAACCGTCTCAGTGTGACCTTCCACGGTTTGATGC 703
Query 688 TAAGAAATTTCTTGAGCTAATGAGAGGCAAGACACTAGCTTTTATAGGCGATTCAGTAGC 747
| |||||||||||| ||||||| |||||||||||| || |||||||| |||||||||||
Sbjct 704 CAGGAAATTTCTTGAACTAATGAAAGGCAAGACACTGGCCTTTATAGGAGATTCAGTAGC 763
Query 748 TCGTAATCAGATGGAGTCCATGATGTGTCTTCTTTGGCAGGTAGAAACTCCGGTTAACCG 807
|||||||||||||||||||||| |||| |||||||||||||| ||||| || || || ||
Sbjct 764 TCGTAATCAGATGGAGTCCATGTTGTGCCTTCTTTGGCAGGTTGAAACACCAGTCAATCG 823
Query 808 TGGGAACAGGAAGATGCAGAGATGGTATTTCAGGTCATCATCGGTGATGATAGCTCGGAT 867
||||| | | |||||||||||||||||||| | ||||||||| || ||||| || || ||
Sbjct 824 TGGGAGCCGAAAGATGCAGAGATGGTATTTTAAGTCATCATCAGTAATGATTGCCCGTAT 883
Query 868 GTGGTCATCTTGGCTGGTCCATCAGTTCAATGAACCGTTTGGTTTTGCTACAGATGGTGT 927
|||||||||||||| || ||||||||||| ||| |||| || |||| | || |||||
Sbjct 884 TTGGTCATCTTGGCTTGTTCATCAGTTCAACGAAAAATTTGATTATGCTCCTGAAGGTGT 943
Query 928 AACTAAACTCAAGCTTGACCAACCCGATGAGCGCATAATTGAAGCTCTTCCGAATTTCGA 987
|| ||||| ||||| || | || |||||||||||||| |||||| | ||||| |||||
Sbjct 944 CACAAAACTAAAGCTGGATCTTCCTGATGAGCGCATAATGGAAGCTATCCCGAAATTCGA 1003
Query 988 TGTGGTTGTACTTTCATCAGGTCACTGGTTTGCAAAACAGTCTGTCTATATTTTAAATGA 1047
|||||||| || |||||||| |||||||| ||||| ||||| ||||| || || || ||
Sbjct 1004 CGTGGTTGTCCTCTCATCAGGACACTGGTTCGCAAAGCAGTCGGTCTACATATTGAAGGA 1063
Query 1048 CCAGATTGTGGGAGGCCAGTTATGGTGGCCAGACAAATCAAAACCC--GAAAAGATTAAC 1105
| |||| ||||||||||| ||||||||||||||||||||||||||| |||| | | ||
Sbjct 1064 CGAGATCGTGGGAGGCCAATTATGGTGGCCAGACAAATCAAAACCCATGAAA-G-TCAAT 1121
Query 1106 AACGTCGAAGCATTTGGGATCTCTGTAGAAACAATCATAAAGGCAATGGCTAAACACCCA 1165
||||| || |||||||| || || || ||||||||| ||||| | ||||||| ||||||
Sbjct 1122 AACGTGGATGCATTTGGAATATCAGTTGAAACAATCCTAAAGTCCATGGCTACACACCCG 1181
Query 1166 AACTACA-CGGGTCTGACCATCT-T-ACGTAC-TTGGTCGCCTGATCATTATGAAGGCGG 1221
||||||| ||| | ||||||| | | | | || || || |||||||| || || |||||
Sbjct 1182 AACTACAGCGGTT-TGACCAT-TGTGA-GAACATTC-TCACCTGATCACTACGAGGGCGG 1237
Query 1222 TGCGTGGAACACTGGTGGATCATGCACAGGTAAAGTAGAGCCGCTTCCT-CCTGGGAATT 1280
||| |||||||| ||||| |||||||| || |||| ||| || | |||| || |||||
Sbjct 1238 TGCTTGGAACACAGGTGGTTCATGCACGGGGAAAGAAGAACC-CATCCTTCCAGGGAAGC 1296
Query 1281 TAGTTACAAACGGGTTCACAGAGATAATGCACGAGAAGCAAGCAACAGGGTTTCACCGT- 1339
|||| | |||||| ||||||||||||||||||||||||||||| ||||| | | ||| |
Sbjct 1297 TAGTGAAAAACGGATTCACAGAGATAATGCACGAGAAGCAAGCGACAGGATATAACC-TA 1355
Query 1340 GCTGTCGCGGATGATAAG-CTCGG-GAATA-GAT-CGAAGAAGCTGAAGCTAATGGATAT 1395
||||| | || | ||| | ||| |||| || | | || | ||||| ||||||||
Sbjct 1356 GCTGTTG---AT-A-AAGTCGCGGAGAATTTGAAGCTTA-AAT-TAAAGCTGATGGATAT 1408
Query 1396 CACTGAGGCTTTCGGGTATCGCCACGACGGTCATCCTGGTCCATACAGGAGTCCTGACCC 1455
||| |||||||| || ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1409 CACAGAGGCTTTTGGATATCGACATGATGGTCATCCTGGTCCATACAGGAGTCCTGACCC 1468
Query 1456 GAAAAAGATCACAAAACGTGGACCAGACGGTCAGCCTCCTCCACAAGACTGTTTGCATTG 1515
||| |||||||| ||||| ||||||||||| | |||||| || || ||||| ||||| ||
Sbjct 1469 GAACAAGATCACTAAACGGGGACCAGACGGACGGCCTCCACCTCAGGACTGCTTGCACTG 1528
Query 1516 GTGCATGCCAGGG-CCAGTGGACACATGGAACGAGATGGTTCT-GGAGATTATTAGGAGA 1573
||||||||| ||| |||||||| ||||||||||| ||||| || |||| | || ||||||
Sbjct 1529 GTGCATGCC-GGGACCAGTGGATACATGGAACGAAATGGT-CTTGGAGCTCATAAGGAGA 1586
Query 1574 GA 1575
||
Sbjct 1587 GA 1588
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68714801980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5